Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:87189220-91849669

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47642 13 87234439 to 87234594 155 - pseudogene predicted gene, 47642
Gm18265 13 87307726 to 87308524 798 + pseudogene predicted gene, 18265
Gm24935 13 87456778 to 87456887 109 + miRNA gene predicted gene, 24935
Tssr120557 13 87663475 to 87663478 3 + TSS region transcription start site region 120557
Tssr120558 13 87667350 to 87667355 5 + TSS region transcription start site region 120558
D13Mit27 13 87753866 to 87754064 198 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 27
Gm21232 13 87782971 to 87783976 1005 + pseudogene predicted gene, 21232
Gm41012 13 87793851 to 87799957 6106 - lncRNA gene predicted gene, 41012
Gm19239 13 87826538 to 87827059 521 + pseudogene predicted gene, 19239
Gm47649 13 87977497 to 87980299 2802 - unclassified gene predicted gene, 47649
Tssr123373 13 88125751 to 88125752 1 - TSS region transcription start site region 123373
D13Mit315 13 88184190 to 88184312 122 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 315
Gm27044 13 88184661 to 88185456 795 - pseudogene predicted gene, 27044
Gm47651 13 88382346 to 88382622 276 + pseudogene predicted gene, 47651
Tssr120559 13 88390576 to 88390580 4 + TSS region transcription start site region 120559
Gm8526 13 88478580 to 88479054 474 + pseudogene predicted gene 8526
Gm47653 13 88480632 to 88480791 159 + pseudogene predicted gene, 47653
Gm19139 13 88509280 to 88511336 2056 - pseudogene predicted gene, 19139
Gm34585 13 88521190 to 88578168 56978 + lincRNA gene predicted gene, 34585
Tssr120560 13 88521190 to 88521203 13 + TSS region transcription start site region 120560
Tssr120561 13 88521218 to 88521230 12 + TSS region transcription start site region 120561
Gm5667 13 88547216 to 88548262 1046 + pseudogene predicted gene 5667
Cpgi5919 13 88821209 to 88822282 1073 CpG island CpG island 5919
Edil3 13 88821472 to 89323223 501751 + protein coding gene EGF-like repeats and discoidin I-like domains 3
Tssr120562 13 88821474 to 88821520 46 + TSS region transcription start site region 120562
Tssr120563 13 88821543 to 88821580 37 + TSS region transcription start site region 120563
Tssr120564 13 88821582 to 88821591 9 + TSS region transcription start site region 120564
Tssr120565 13 88821594 to 88821603 9 + TSS region transcription start site region 120565
Tssr120566 13 88821606 to 88821623 17 + TSS region transcription start site region 120566
Tssr120567 13 88821669 to 88821676 7 + TSS region transcription start site region 120567
Tssr120568 13 88821679 to 88821684 5 + TSS region transcription start site region 120568
Tssr120569 13 88821708 to 88821719 11 + TSS region transcription start site region 120569
Tssr120570 13 88821732 to 88821739 7 + TSS region transcription start site region 120570
Tssr120571 13 88821750 to 88821761 11 + TSS region transcription start site region 120571
Tssr123374 13 88821774 to 88821795 21 - TSS region transcription start site region 123374
Tssr120572 13 88821882 to 88821914 32 + TSS region transcription start site region 120572
Tssr120573 13 88821916 to 88821942 26 + TSS region transcription start site region 120573
Tssr120574 13 88821943 to 88821976 33 + TSS region transcription start site region 120574
Tssr120575 13 88823591 to 88823595 4 + TSS region transcription start site region 120575
Cpgi5920 13 88823638 to 88824152 514 CpG island CpG island 5920
Tssr120576 13 88824214 to 88824218 4 + TSS region transcription start site region 120576
Gm38504 13 88824224 to 88836120 11896 + lncRNA gene predicted gene, 38504
Tssr120577 13 88827494 to 88827495 1 + TSS region transcription start site region 120577
Gm18317 13 88843574 to 88844576 1002 + pseudogene predicted gene, 18317
Gm46433 13 88870746 to 88880679 9933 + lncRNA gene predicted gene, 46433
Tssr120578 13 88920383 to 88920386 3 + TSS region transcription start site region 120578
Tssr120579 13 89051407 to 89051411 4 + TSS region transcription start site region 120579
Tssr120580 13 89209709 to 89209714 5 + TSS region transcription start site region 120580
Tssr120581 13 89227467 to 89227473 6 + TSS region transcription start site region 120581
Tssr123375 13 89278356 to 89278357 1 - TSS region transcription start site region 123375
Tssr123376 13 89384819 to 89384825 6 - TSS region transcription start site region 123376
Gm34699 13 89499220 to 89539669 40449 - lncRNA gene predicted gene, 34699
Cpgi5921 13 89539118 to 89539621 503 CpG island CpG island 5921
Tssr120582 13 89540505 to 89540510 5 + TSS region transcription start site region 120582
Hapln1 13 89540528 to 89611832 71304 + protein coding gene hyaluronan and proteoglycan link protein 1
Tssr120583 13 89540662 to 89540678 16 + TSS region transcription start site region 120583
Tssr120584 13 89540687 to 89540698 11 + TSS region transcription start site region 120584
Tssr120585 13 89540705 to 89540712 7 + TSS region transcription start site region 120585
Tssr120586 13 89540815 to 89540821 6 + TSS region transcription start site region 120586
Tssr120587 13 89540845 to 89540865 20 + TSS region transcription start site region 120587
Gm8546 13 89577158 to 89578413 1255 - pseudogene predicted gene 8546
Tssr123377 13 89578441 to 89578463 22 - TSS region transcription start site region 123377
Tssr120588 13 89584524 to 89584543 19 + TSS region transcription start site region 120588
Tssr120589 13 89584651 to 89584708 57 + TSS region transcription start site region 120589
Vcan 13 89655312 to 89742509 87197 - protein coding gene versican
Tssr123378 13 89658104 to 89658126 22 - TSS region transcription start site region 123378
Tssr123379 13 89662026 to 89662034 8 - TSS region transcription start site region 123379
Tssr123380 13 89662056 to 89662067 11 - TSS region transcription start site region 123380
Gm16318 13 89662770 to 89663370 600 + pseudogene predicted gene 16318
Tssr123381 13 89690731 to 89690735 4 - TSS region transcription start site region 123381
Tssr123382 13 89694925 to 89694931 6 - TSS region transcription start site region 123382
Tssr123383 13 89712274 to 89712288 14 - TSS region transcription start site region 123383
Gm4117 13 89734040 to 89798058 64018 + antisense lncRNA gene predicted gene 4117
Cpgi5922 13 89739332 to 89739788 456 CpG island CpG island 5922
Tssr120590 13 89739451 to 89739471 20 + TSS region transcription start site region 120590
Tssr120591 13 89739479 to 89739493 14 + TSS region transcription start site region 120591
Cpgi5923 13 89740676 to 89741356 680 CpG island CpG island 5923
Cpgi5924 13 89742076 to 89742654 578 CpG island CpG island 5924
Tssr123384 13 89742272 to 89742277 5 - TSS region transcription start site region 123384
Tssr123385 13 89742309 to 89742330 21 - TSS region transcription start site region 123385
Tssr123386 13 89742341 to 89742365 24 - TSS region transcription start site region 123386
Tssr123387 13 89742381 to 89742392 11 - TSS region transcription start site region 123387
Tssr123388 13 89742490 to 89742515 25 - TSS region transcription start site region 123388
Tssr123389 13 89742516 to 89742531 15 - TSS region transcription start site region 123389
Tssr123390 13 89742551 to 89742569 18 - TSS region transcription start site region 123390
Tssr123391 13 89742663 to 89742674 11 - TSS region transcription start site region 123391
Tssr123392 13 89742684 to 89742695 11 - TSS region transcription start site region 123392
Xrcc4 13 89848914 to 90089608 240694 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 4
Tssr123393 13 89893233 to 89893235 2 - TSS region transcription start site region 123393
A430063P04Rik 13 89902606 to 89905711 3105 unclassified gene RIKEN cDNA A430063P04 gene
Tssr123394 13 89909658 to 89909661 3 - TSS region transcription start site region 123394
Gm24498 13 89927442 to 89927543 101 - snRNA gene predicted gene, 24498
Tssr123395 13 90089060 to 90089092 32 - TSS region transcription start site region 123395
Tssr123396 13 90089105 to 90089116 11 - TSS region transcription start site region 123396
Cpgi5925 13 90089263 to 90090137 874 CpG island CpG island 5925
Tssr123397 13 90089513 to 90089543 30 - TSS region transcription start site region 123397
Tssr123398 13 90089556 to 90089616 60 - TSS region transcription start site region 123398
Tmem167 13 90089667 to 90114921 25254 + protein coding gene transmembrane protein 167
Tssr120592 13 90089677 to 90089688 11 + TSS region transcription start site region 120592
Tssr120593 13 90089705 to 90089740 35 + TSS region transcription start site region 120593
Gm24507 13 90098981 to 90099114 133 + snoRNA gene predicted gene, 24507
Tssr120594 13 90101822 to 90101827 5 + TSS region transcription start site region 120594
Gm37727 13 90157154 to 90157972 818 + unclassified gene predicted gene, 37727
Gm41013 13 90160746 to 90163019 2273 - lncRNA gene predicted gene, 41013
Gm29680 13 90179217 to 90217142 37925 - lincRNA gene predicted gene, 29680
Gm37054 13 90238172 to 90238714 542 + unclassified gene predicted gene, 37054
Gm47520 13 90360130 to 90418100 57970 - lincRNA gene predicted gene, 47520
Gm37708 13 90385663 to 90386557 894 - unclassified gene predicted gene, 37708
Gm35111 13 90466750 to 90549165 82415 - lncRNA gene predicted gene, 35111
Gm21726 13 90583329 to 90583720 391 + pseudogene predicted gene, 21726
Gm36966 13 90634085 to 90634497 412 + unclassified gene predicted gene, 36966
Gm44338 13 90760112 to 90760221 109 + miRNA gene predicted gene, 44338
Gm47521 13 90777825 to 90778083 258 - pseudogene predicted gene, 47521
Gm18518 13 90867608 to 90868607 999 + pseudogene predicted gene, 18518
Atp6ap1l 13 90883439 to 90905355 21916 - protein coding gene ATPase, H+ transporting, lysosomal accessory protein 1-like
Tssr123399 13 90886718 to 90886723 5 - TSS region transcription start site region 123399
Tssr123400 13 90886756 to 90886761 5 - TSS region transcription start site region 123400
Tssr123401 13 90886777 to 90886822 45 - TSS region transcription start site region 123401
Tssr123402 13 90905321 to 90905341 20 - TSS region transcription start site region 123402
Cpgi5926 13 90922888 to 90923789 901 CpG island CpG island 5926
Rps23 13 90923122 to 90924732 1610 + protein coding gene ribosomal protein S23
Tssr120595 13 90923122 to 90923170 48 + TSS region transcription start site region 120595
Gm46434 13 90929910 to 90931681 1771 - lncRNA gene predicted gene, 46434
Atg10 13 90935356 to 91223968 288612 - protein coding gene autophagy related 10
Tssr120596 13 91098496 to 91098501 5 + TSS region transcription start site region 120596
D13Mit319 13 91181749 to 91181856 107 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-319
D13Gor2 13 91182431 to 91182946 515 DNA segment DNA segment, Chr 13, Gorin 2
Gm17450 13 91220452 to 91220878 426 + pseudogene predicted gene, 17450
Cpgi5927 13 91223735 to 91224387 652 CpG island CpG island 5927
Tssr123403 13 91223955 to 91223994 39 - TSS region transcription start site region 123403
D13Sh1 13 91236286 to 91236665 379 DNA segment DNA segment, Chr 13, Steve Hardies 1
Gm41014 13 91250388 to 91278012 27624 - lncRNA gene predicted gene, 41014
Gm47381 13 91259376 to 91274954 15578 + lincRNA gene predicted gene, 47381
Gm4130 13 91261449 to 91262418 969 - pseudogene predicted gene 4130
Tssr123404 13 91262748 to 91262751 3 - TSS region transcription start site region 123404
Tssr120597 13 91318820 to 91318822 2 + TSS region transcription start site region 120597
A830009L08Rik 13 91368990 to 91388085 19095 - lincRNA gene RIKEN cDNA A830009L08 gene
Cpgi5928 13 91370858 to 91371159 301 CpG island CpG island 5928
Tssr123405 13 91370942 to 91370974 32 - TSS region transcription start site region 123405
Gm29540 13 91373842 to 91374294 452 - sense intronic lncRNA gene predicted gene 29540
Tssr4136 13 91374877 to 91374883 6 + TSS region transcription start site region 4136
Tssr123406 13 91388079 to 91388090 11 - TSS region transcription start site region 123406
Tssr123407 13 91388101 to 91388110 9 - TSS region transcription start site region 123407
Cpgi5929 13 91460170 to 91462377 2207 CpG island CpG island 5929
Ssbp2 13 91460283 to 91703429 243146 + protein coding gene single-stranded DNA binding protein 2
Tssr120598 13 91461105 to 91461112 7 + TSS region transcription start site region 120598
Tssr120599 13 91461114 to 91461125 11 + TSS region transcription start site region 120599
Tssr120600 13 91461126 to 91461143 17 + TSS region transcription start site region 120600
Tssr120601 13 91461145 to 91461188 43 + TSS region transcription start site region 120601
Tssr120602 13 91461199 to 91461204 5 + TSS region transcription start site region 120602
D13Mit202 13 91469631 to 91469771 140 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 202
Tssr120603 13 91484539 to 91484556 17 + TSS region transcription start site region 120603
Tssr120604 13 91484560 to 91484575 15 + TSS region transcription start site region 120604
Tssr120605 13 91496244 to 91496245 1 + TSS region transcription start site region 120605
Tssr120606 13 91504477 to 91504489 12 + TSS region transcription start site region 120606
Gm41016 13 91534058 to 91539333 5275 + lncRNA gene predicted gene, 41016
Tssr120607 13 91564320 to 91564334 14 + TSS region transcription start site region 120607
Tssr120608 13 91581826 to 91581831 5 + TSS region transcription start site region 120608
Tssr123408 13 91591418 to 91591419 1 - TSS region transcription start site region 123408
Tssr120609 13 91606444 to 91606450 6 + TSS region transcription start site region 120609
Tssr120610 13 91609277 to 91609303 26 + TSS region transcription start site region 120610
Tssr120611 13 91624297 to 91624304 7 + TSS region transcription start site region 120611
D13Mit192.1 13 91665778 to 91665926 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 192.1
Tssr120612 13 91676782 to 91676793 11 + TSS region transcription start site region 120612
Tssr120613 13 91678616 to 91678631 15 + TSS region transcription start site region 120613
4833422C13Rik 13 91701665 to 91741872 40207 - antisense lncRNA gene RIKEN cDNA 4833422C13 gene
Gm22778 13 91723256 to 91723383 127 + snoRNA gene predicted gene, 22778
Cpgi5930 13 91741175 to 91741884 709 CpG island CpG island 5930
Tssr120614 13 91741484 to 91741489 5 + TSS region transcription start site region 120614
Tssr120615 13 91741507 to 91741531 24 + TSS region transcription start site region 120615
Acot12 13 91741512 to 91786148 44636 + protein coding gene acyl-CoA thioesterase 12
Tssr123409 13 91741746 to 91741766 20 - TSS region transcription start site region 123409
Tssr123410 13 91741866 to 91741880 14 - TSS region transcription start site region 123410
Gm24597 13 91744705 to 91745004 299 - unclassified non-coding RNA gene predicted gene, 24597
Tssr120616 13 91750202 to 91750235 33 + TSS region transcription start site region 120616
Gm27656 13 91752106 to 91752185 79 + miRNA gene predicted gene, 27656
4933440K10Rik 13 91780896 to 91782354 1458 unclassified gene RIKEN cDNA 4933440K10 gene
D13Mit193.1 13 91780967 to 91781078 111 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 193.1
D13Mit193 13 91781056 to 91781177 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 193
Zcchc9 13 91796533 to 91807705 11172 - protein coding gene zinc finger, CCHC domain containing 9
Cpgi5931 13 91807145 to 91807874 729 CpG island CpG island 5931
Tssr123411 13 91807612 to 91807619 7 - TSS region transcription start site region 123411
Tssr123412 13 91807636 to 91807655 19 - TSS region transcription start site region 123412
Tssr123413 13 91807658 to 91807708 50 - TSS region transcription start site region 123413
Tssr120617 13 91807701 to 91807720 19 + TSS region transcription start site region 120617
Tssr120618 13 91807780 to 91807793 13 + TSS region transcription start site region 120618
Acigg6 13 105683731 to 89583537 -16100194 QTL anti COL7 IgG2a/c antibody 6
Egaq4 13 112294569 to 87753866 -24540703 QTL early growth adjusted QTL 4