Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:86051538-89602059

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr123372 13 86054214 to 86054227 13 - TSS region transcription start site region 123372
Tssr120556 13 86160129 to 86160130 1 + TSS region transcription start site region 120556
Gm27025 13 86235827 to 86237727 1900 + pseudogene predicted gene, 27025
Gm25700 13 86725823 to 86725932 109 - miRNA gene predicted gene, 25700
Tssr4135 13 87048307 to 87048310 3 + TSS region transcription start site region 4135
Gm47642 13 87234439 to 87234594 155 - pseudogene predicted gene, 47642
Gm18265 13 87307726 to 87308524 798 + pseudogene predicted gene, 18265
Gm24935 13 87456778 to 87456887 109 + miRNA gene predicted gene, 24935
Tssr120557 13 87663475 to 87663478 3 + TSS region transcription start site region 120557
Tssr120558 13 87667350 to 87667355 5 + TSS region transcription start site region 120558
D13Mit27 13 87753866 to 87754064 198 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 27
Gm21232 13 87782971 to 87783976 1005 + pseudogene predicted gene, 21232
Gm41012 13 87793851 to 87799957 6106 - lncRNA gene predicted gene, 41012
Gm19239 13 87826538 to 87827059 521 + pseudogene predicted gene, 19239
Gm47649 13 87977497 to 87980299 2802 - unclassified gene predicted gene, 47649
Tssr123373 13 88125751 to 88125752 1 - TSS region transcription start site region 123373
D13Mit315 13 88184190 to 88184312 122 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 315
Gm27044 13 88184661 to 88185456 795 - pseudogene predicted gene, 27044
Gm47651 13 88382346 to 88382622 276 + pseudogene predicted gene, 47651
Tssr120559 13 88390576 to 88390580 4 + TSS region transcription start site region 120559
Gm8526 13 88478580 to 88479054 474 + pseudogene predicted gene 8526
Gm47653 13 88480632 to 88480791 159 + pseudogene predicted gene, 47653
Gm19139 13 88509280 to 88511336 2056 - pseudogene predicted gene, 19139
Gm34585 13 88521190 to 88578168 56978 + lincRNA gene predicted gene, 34585
Tssr120560 13 88521190 to 88521203 13 + TSS region transcription start site region 120560
Tssr120561 13 88521218 to 88521230 12 + TSS region transcription start site region 120561
Gm5667 13 88547216 to 88548262 1046 + pseudogene predicted gene 5667
Cpgi5919 13 88821209 to 88822282 1073 CpG island CpG island 5919
Edil3 13 88821472 to 89323223 501751 + protein coding gene EGF-like repeats and discoidin I-like domains 3
Tssr120562 13 88821474 to 88821520 46 + TSS region transcription start site region 120562
Tssr120563 13 88821543 to 88821580 37 + TSS region transcription start site region 120563
Tssr120564 13 88821582 to 88821591 9 + TSS region transcription start site region 120564
Tssr120565 13 88821594 to 88821603 9 + TSS region transcription start site region 120565
Tssr120566 13 88821606 to 88821623 17 + TSS region transcription start site region 120566
Tssr120567 13 88821669 to 88821676 7 + TSS region transcription start site region 120567
Tssr120568 13 88821679 to 88821684 5 + TSS region transcription start site region 120568
Tssr120569 13 88821708 to 88821719 11 + TSS region transcription start site region 120569
Tssr120570 13 88821732 to 88821739 7 + TSS region transcription start site region 120570
Tssr120571 13 88821750 to 88821761 11 + TSS region transcription start site region 120571
Tssr123374 13 88821774 to 88821795 21 - TSS region transcription start site region 123374
Tssr120572 13 88821882 to 88821914 32 + TSS region transcription start site region 120572
Tssr120573 13 88821916 to 88821942 26 + TSS region transcription start site region 120573
Tssr120574 13 88821943 to 88821976 33 + TSS region transcription start site region 120574
Tssr120575 13 88823591 to 88823595 4 + TSS region transcription start site region 120575
Cpgi5920 13 88823638 to 88824152 514 CpG island CpG island 5920
Tssr120576 13 88824214 to 88824218 4 + TSS region transcription start site region 120576
Gm38504 13 88824224 to 88836120 11896 + lncRNA gene predicted gene, 38504
Tssr120577 13 88827494 to 88827495 1 + TSS region transcription start site region 120577
Gm18317 13 88843574 to 88844576 1002 + pseudogene predicted gene, 18317
Gm46433 13 88870746 to 88880679 9933 + lncRNA gene predicted gene, 46433
Tssr120578 13 88920383 to 88920386 3 + TSS region transcription start site region 120578
Tssr120579 13 89051407 to 89051411 4 + TSS region transcription start site region 120579
Tssr120580 13 89209709 to 89209714 5 + TSS region transcription start site region 120580
Tssr120581 13 89227467 to 89227473 6 + TSS region transcription start site region 120581
Tssr123375 13 89278356 to 89278357 1 - TSS region transcription start site region 123375
Tssr123376 13 89384819 to 89384825 6 - TSS region transcription start site region 123376
Gm34699 13 89499220 to 89539669 40449 - lncRNA gene predicted gene, 34699
Cpgi5921 13 89539118 to 89539621 503 CpG island CpG island 5921
Tssr120582 13 89540505 to 89540510 5 + TSS region transcription start site region 120582
Hapln1 13 89540528 to 89611832 71304 + protein coding gene hyaluronan and proteoglycan link protein 1
Tssr120583 13 89540662 to 89540678 16 + TSS region transcription start site region 120583
Tssr120584 13 89540687 to 89540698 11 + TSS region transcription start site region 120584
Tssr120585 13 89540705 to 89540712 7 + TSS region transcription start site region 120585
Tssr120586 13 89540815 to 89540821 6 + TSS region transcription start site region 120586
Tssr120587 13 89540845 to 89540865 20 + TSS region transcription start site region 120587
Gm8546 13 89577158 to 89578413 1255 - pseudogene predicted gene 8546
Tssr123377 13 89578441 to 89578463 22 - TSS region transcription start site region 123377
Tssr120588 13 89584524 to 89584543 19 + TSS region transcription start site region 120588
Tssr120589 13 89584651 to 89584708 57 + TSS region transcription start site region 120589
Acigg6 13 105683731 to 89583537 -16100194 QTL anti COL7 IgG2a/c antibody 6
Egaq4 13 112294569 to 87753866 -24540703 QTL early growth adjusted QTL 4