Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:83636652-84416942

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mef2c 13 83504034 to 83667079 163045 + protein coding gene myocyte enhancer factor 2C
Tssr120511 13 83656713 to 83656716 3 + TSS region transcription start site region 120511
Cpgi5901 13 83662402 to 83662632 230 CpG island CpG island 5901
Tssr120512 13 83663721 to 83663730 9 + TSS region transcription start site region 120512
Tssr120513 13 83663827 to 83663840 13 + TSS region transcription start site region 120513
Tssr120514 13 83665971 to 83665984 13 + TSS region transcription start site region 120514
Tssr120515 13 83687192 to 83687219 27 + TSS region transcription start site region 120515
Gm48067 13 83687222 to 83687441 219 + pseudogene predicted gene, 48067
Cpgi5902 13 83715018 to 83715219 201 CpG island CpG island 5902
Tssr120516 13 83715244 to 83715255 11 + TSS region transcription start site region 120516
Tssr120517 13 83715256 to 83715267 11 + TSS region transcription start site region 120517
Tssr120518 13 83715275 to 83715302 27 + TSS region transcription start site region 120518
Tssr120519 13 83715329 to 83715345 16 + TSS region transcription start site region 120519
Tssr120520 13 83715352 to 83715361 9 + TSS region transcription start site region 120520
Cpgi5903 13 83716360 to 83716598 238 CpG island CpG island 5903
Cpgi5904 13 83720821 to 83721314 493 CpG island CpG island 5904
Tssr123336 13 83721149 to 83721155 6 - TSS region transcription start site region 123336
Tssr120521 13 83721282 to 83721285 3 + TSS region transcription start site region 120521
Tssr120522 13 83721290 to 83721309 19 + TSS region transcription start site region 120522
Tssr120523 13 83721329 to 83721344 15 + TSS region transcription start site region 120523
Tssr120524 13 83721357 to 83721384 27 + TSS region transcription start site region 120524
Tssr4133 13 83721396 to 83721401 5 + TSS region transcription start site region 4133
Gm26803 13 83723442 to 83729582 6140 - lincRNA gene predicted gene, 26803
Tssr123337 13 83727169 to 83727187 18 - TSS region transcription start site region 123337
Cpgi5905 13 83727218 to 83727531 313 CpG island CpG island 5905
Tssr120525 13 83727347 to 83727358 11 + TSS region transcription start site region 120525
Tssr120526 13 83727370 to 83727387 17 + TSS region transcription start site region 120526
C130071C03Rik 13 83728106 to 83735669 7563 + lincRNA gene RIKEN cDNA C130071C03 gene
Tssr123338 13 83729132 to 83729135 3 - TSS region transcription start site region 123338
Tssr120527 13 83729457 to 83729468 11 + TSS region transcription start site region 120527
Tssr120528 13 83729475 to 83729494 19 + TSS region transcription start site region 120528
Tssr123339 13 83729544 to 83729584 40 - TSS region transcription start site region 123339
Cpgi5906 13 83729546 to 83729980 434 CpG island CpG island 5906
Tssr123340 13 83729669 to 83729680 11 - TSS region transcription start site region 123340
Tssr123341 13 83729681 to 83729711 30 - TSS region transcription start site region 123341
Cpgi5907 13 83730404 to 83731631 1227 CpG island CpG island 5907
Tssr120529 13 83731378 to 83731394 16 + TSS region transcription start site region 120529
Tssr120530 13 83732367 to 83732370 3 + TSS region transcription start site region 120530
Tssr120531 13 83732438 to 83732465 27 + TSS region transcription start site region 120531
Tssr120532 13 83732563 to 83732574 11 + TSS region transcription start site region 120532
Cpgi5908 13 83732726 to 83733017 291 CpG island CpG island 5908
Gm33366 13 83734709 to 83738535 3826 - unclassified non-coding RNA gene predicted gene, 33366
Cpgi5909 13 83737817 to 83738208 391 CpG island CpG island 5909
Mir9-2 13 83738814 to 83738885 71 + miRNA gene microRNA 9-2
Tssr120533 13 83738874 to 83738887 13 + TSS region transcription start site region 120533
Tssr120534 13 83739049 to 83739065 16 + TSS region transcription start site region 120534
Tssr120535 13 83739184 to 83739189 5 + TSS region transcription start site region 120535
Tssr120536 13 83740188 to 83740201 13 + TSS region transcription start site region 120536
Cpgi5910 13 83744923 to 83745501 578 CpG island CpG island 5910
Gm6411 13 83761138 to 83762335 1197 - pseudogene predicted gene 6411
Tssr120537 13 83801728 to 83801729 1 + TSS region transcription start site region 120537
Tssr120538 13 83832238 to 83832243 5 + TSS region transcription start site region 120538
Gm5452 13 83832340 to 83833336 996 + pseudogene predicted gene 5452
D13Mit69 13 83842575 to 83842773 198 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 69
2810049E08Rik 13 83891208 to 83928710 37502 + lincRNA gene RIKEN cDNA 2810049E08 gene
Gm4241 13 83971355 to 83987991 16636 - lincRNA gene predicted gene 4241
Tssr123342 13 83987841 to 83987863 22 - TSS region transcription start site region 123342
Gm8447 13 83997547 to 83998439 892 - pseudogene predicted gene 8447
Gm17750 13 84025297 to 84064772 39475 - lincRNA gene predicted gene, 17750
D13Sh2 13 84026652 to 84026942 290 DNA segment DNA segment, Chr 13, Steve Hardies 2
D13Mit298 13 84030947 to 84031093 146 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-298
Tssr123343 13 84055920 to 84055923 3 - TSS region transcription start site region 123343
Tssr123344 13 84056437 to 84056468 31 - TSS region transcription start site region 123344
Tssr120539 13 84063108 to 84063111 3 + TSS region transcription start site region 120539
Tssr123345 13 84064705 to 84064724 19 - TSS region transcription start site region 123345
Tssr123346 13 84064785 to 84064808 23 - TSS region transcription start site region 123346
Gm8456 13 84166453 to 84166888 435 + pseudogene predicted gene 8456
Gm24331 13 84182278 to 84182344 66 + miRNA gene predicted gene, 24331
A230107N01Rik 13 84219581 to 84222175 2594 - antisense lncRNA gene RIKEN cDNA A230107N01 gene
Cpgi5911 13 84222009 to 84222809 800 CpG island CpG island 5911
Tssr120540 13 84222186 to 84222199 13 + TSS region transcription start site region 120540
Tmem161b 13 84222187 to 84295966 73779 + protein coding gene transmembrane protein 161B
Tssr120541 13 84222286 to 84222356 70 + TSS region transcription start site region 120541
Tssr120542 13 84244110 to 84244114 4 + TSS region transcription start site region 120542
Gm49223 13 84274844 to 84280817 5973 + sense intronic lncRNA gene predicted gene, 49223
Tssr120543 13 84280755 to 84280758 3 + TSS region transcription start site region 120543
Gm46432 13 84281179 to 84281816 637 - pseudogene predicted gene, 46432
Tssr120544 13 84285227 to 84285232 5 + TSS region transcription start site region 120544
Tssr120545 13 84290290 to 84290300 10 + TSS region transcription start site region 120545
Gm26927 13 84339149 to 84340113 964 - pseudogene predicted gene, 26927
Tssr123347 13 84340184 to 84340188 4 - TSS region transcription start site region 123347
Cpgi5912 13 84345802 to 84346379 577 CpG island CpG island 5912
Gm41011 13 84347671 to 84357771 10100 + lncRNA gene predicted gene, 41011
Cpgi5913 13 84347826 to 84348116 290 CpG island CpG island 5913
Tssr123348 13 84347884 to 84347906 22 - TSS region transcription start site region 123348
Tssr120546 13 84348425 to 84348455 30 + TSS region transcription start site region 120546
Cpgi5914 13 84404721 to 84404884 163 CpG island CpG island 5914