Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:83624780-86879130

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mef2c 13 83504034 to 83667079 163045 + protein coding gene myocyte enhancer factor 2C
Tssr120511 13 83656713 to 83656716 3 + TSS region transcription start site region 120511
Cpgi5901 13 83662402 to 83662632 230 CpG island CpG island 5901
Tssr120512 13 83663721 to 83663730 9 + TSS region transcription start site region 120512
Tssr120513 13 83663827 to 83663840 13 + TSS region transcription start site region 120513
Tssr120514 13 83665971 to 83665984 13 + TSS region transcription start site region 120514
Tssr120515 13 83687192 to 83687219 27 + TSS region transcription start site region 120515
Gm48067 13 83687222 to 83687441 219 + pseudogene predicted gene, 48067
Cpgi5902 13 83715018 to 83715219 201 CpG island CpG island 5902
Tssr120516 13 83715244 to 83715255 11 + TSS region transcription start site region 120516
Tssr120517 13 83715256 to 83715267 11 + TSS region transcription start site region 120517
Tssr120518 13 83715275 to 83715302 27 + TSS region transcription start site region 120518
Tssr120519 13 83715329 to 83715345 16 + TSS region transcription start site region 120519
Tssr120520 13 83715352 to 83715361 9 + TSS region transcription start site region 120520
Cpgi5903 13 83716360 to 83716598 238 CpG island CpG island 5903
Cpgi5904 13 83720821 to 83721314 493 CpG island CpG island 5904
Tssr123336 13 83721149 to 83721155 6 - TSS region transcription start site region 123336
Tssr120521 13 83721282 to 83721285 3 + TSS region transcription start site region 120521
Tssr120522 13 83721290 to 83721309 19 + TSS region transcription start site region 120522
Tssr120523 13 83721329 to 83721344 15 + TSS region transcription start site region 120523
Tssr120524 13 83721357 to 83721384 27 + TSS region transcription start site region 120524
Tssr4133 13 83721396 to 83721401 5 + TSS region transcription start site region 4133
Gm26803 13 83723442 to 83729582 6140 - lincRNA gene predicted gene, 26803
Tssr123337 13 83727169 to 83727187 18 - TSS region transcription start site region 123337
Cpgi5905 13 83727218 to 83727531 313 CpG island CpG island 5905
Tssr120525 13 83727347 to 83727358 11 + TSS region transcription start site region 120525
Tssr120526 13 83727370 to 83727387 17 + TSS region transcription start site region 120526
C130071C03Rik 13 83728106 to 83735669 7563 + lincRNA gene RIKEN cDNA C130071C03 gene
Tssr123338 13 83729132 to 83729135 3 - TSS region transcription start site region 123338
Tssr120527 13 83729457 to 83729468 11 + TSS region transcription start site region 120527
Tssr120528 13 83729475 to 83729494 19 + TSS region transcription start site region 120528
Tssr123339 13 83729544 to 83729584 40 - TSS region transcription start site region 123339
Cpgi5906 13 83729546 to 83729980 434 CpG island CpG island 5906
Tssr123340 13 83729669 to 83729680 11 - TSS region transcription start site region 123340
Tssr123341 13 83729681 to 83729711 30 - TSS region transcription start site region 123341
Cpgi5907 13 83730404 to 83731631 1227 CpG island CpG island 5907
Tssr120529 13 83731378 to 83731394 16 + TSS region transcription start site region 120529
Tssr120530 13 83732367 to 83732370 3 + TSS region transcription start site region 120530
Tssr120531 13 83732438 to 83732465 27 + TSS region transcription start site region 120531
Tssr120532 13 83732563 to 83732574 11 + TSS region transcription start site region 120532
Cpgi5908 13 83732726 to 83733017 291 CpG island CpG island 5908
Gm33366 13 83734709 to 83738535 3826 - unclassified non-coding RNA gene predicted gene, 33366
Cpgi5909 13 83737817 to 83738208 391 CpG island CpG island 5909
Mir9-2 13 83738814 to 83738885 71 + miRNA gene microRNA 9-2
Tssr120533 13 83738874 to 83738887 13 + TSS region transcription start site region 120533
Tssr120534 13 83739049 to 83739065 16 + TSS region transcription start site region 120534
Tssr120535 13 83739184 to 83739189 5 + TSS region transcription start site region 120535
Tssr120536 13 83740188 to 83740201 13 + TSS region transcription start site region 120536
Cpgi5910 13 83744923 to 83745501 578 CpG island CpG island 5910
Gm6411 13 83761138 to 83762335 1197 - pseudogene predicted gene 6411
Tssr120537 13 83801728 to 83801729 1 + TSS region transcription start site region 120537
Tssr120538 13 83832238 to 83832243 5 + TSS region transcription start site region 120538
Gm5452 13 83832340 to 83833336 996 + pseudogene predicted gene 5452
D13Mit69 13 83842575 to 83842773 198 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 69
2810049E08Rik 13 83891208 to 83928710 37502 + lincRNA gene RIKEN cDNA 2810049E08 gene
Gm4241 13 83971355 to 83987991 16636 - lincRNA gene predicted gene 4241
Tssr123342 13 83987841 to 83987863 22 - TSS region transcription start site region 123342
Gm8447 13 83997547 to 83998439 892 - pseudogene predicted gene 8447
Gm17750 13 84025297 to 84064772 39475 - lincRNA gene predicted gene, 17750
D13Sh2 13 84026652 to 84026942 290 DNA segment DNA segment, Chr 13, Steve Hardies 2
D13Mit298 13 84030947 to 84031093 146 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-298
Tssr123343 13 84055920 to 84055923 3 - TSS region transcription start site region 123343
Tssr123344 13 84056437 to 84056468 31 - TSS region transcription start site region 123344
Tssr120539 13 84063108 to 84063111 3 + TSS region transcription start site region 120539
Tssr123345 13 84064705 to 84064724 19 - TSS region transcription start site region 123345
Tssr123346 13 84064785 to 84064808 23 - TSS region transcription start site region 123346
Gm8456 13 84166453 to 84166888 435 + pseudogene predicted gene 8456
Gm24331 13 84182278 to 84182344 66 + miRNA gene predicted gene, 24331
A230107N01Rik 13 84219581 to 84222175 2594 - antisense lncRNA gene RIKEN cDNA A230107N01 gene
Cpgi5911 13 84222009 to 84222809 800 CpG island CpG island 5911
Tssr120540 13 84222186 to 84222199 13 + TSS region transcription start site region 120540
Tmem161b 13 84222187 to 84295966 73779 + protein coding gene transmembrane protein 161B
Tssr120541 13 84222286 to 84222356 70 + TSS region transcription start site region 120541
Tssr120542 13 84244110 to 84244114 4 + TSS region transcription start site region 120542
Gm49223 13 84274844 to 84280817 5973 + sense intronic lncRNA gene predicted gene, 49223
Tssr120543 13 84280755 to 84280758 3 + TSS region transcription start site region 120543
Gm46432 13 84281179 to 84281816 637 - pseudogene predicted gene, 46432
Tssr120544 13 84285227 to 84285232 5 + TSS region transcription start site region 120544
Tssr120545 13 84290290 to 84290300 10 + TSS region transcription start site region 120545
Gm26927 13 84339149 to 84340113 964 - pseudogene predicted gene, 26927
Tssr123347 13 84340184 to 84340188 4 - TSS region transcription start site region 123347
Cpgi5912 13 84345802 to 84346379 577 CpG island CpG island 5912
Gm41011 13 84347671 to 84357771 10100 + lncRNA gene predicted gene, 41011
Cpgi5913 13 84347826 to 84348116 290 CpG island CpG island 5913
Tssr123348 13 84347884 to 84347906 22 - TSS region transcription start site region 123348
Tssr120546 13 84348425 to 84348455 30 + TSS region transcription start site region 120546
Cpgi5914 13 84404721 to 84404884 163 CpG island CpG island 5914
D13Mit285 13 84553251 to 84553374 123 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 285
Gm34196 13 84573766 to 84906167 332401 - lncRNA gene predicted gene, 34196
Gm34246 13 84677177 to 84699677 22500 + lncRNA gene predicted gene, 34246
Gm26913 13 84690210 to 84690941 731 - pseudogene predicted gene, 26913
Heal8 13 84905880 to 84906000 120 QTL wound healing/regeneration 8
D13Mit191 13 84905880 to 84906000 120 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 191
Gm4059 13 84973712 to 84974317 605 - pseudogene predicted gene 4059
Gm4066 13 85025098 to 85025436 338 - pseudogene predicted pseudogene 4066
Gm47745 13 85094335 to 85095373 1038 + pseudogene predicted gene, 47745
Gm4076 13 85126550 to 85127514 964 - protein coding gene predicted gene 4076
Tssr120547 13 85126564 to 85126590 26 + TSS region transcription start site region 120547
Tssr123349 13 85126630 to 85126639 9 - TSS region transcription start site region 123349
Tssr120548 13 85126690 to 85126702 12 + TSS region transcription start site region 120548
Cpgi5915 13 85126699 to 85127516 817 CpG island CpG island 5915
Tssr120549 13 85126735 to 85126769 34 + TSS region transcription start site region 120549
Tssr4134 13 85126848 to 85126882 34 + TSS region transcription start site region 4134
Tssr123350 13 85126986 to 85127010 24 - TSS region transcription start site region 123350
Tssr123351 13 85127087 to 85127104 17 - TSS region transcription start site region 123351
Tssr123352 13 85127393 to 85127414 21 - TSS region transcription start site region 123352
Gm47746 13 85140720 to 85141102 382 + pseudogene predicted gene, 47746
Cpgi5916 13 85189216 to 85190003 787 CpG island CpG island 5916
Ccnh 13 85189377 to 85213723 24346 + protein coding gene cyclin H
Tssr120550 13 85189379 to 85189395 16 + TSS region transcription start site region 120550
Tssr120551 13 85189403 to 85189425 22 + TSS region transcription start site region 120551
Tssr120552 13 85189433 to 85189487 54 + TSS region transcription start site region 120552
Tssr120553 13 85189492 to 85189508 16 + TSS region transcription start site region 120553
Tssr120554 13 85196246 to 85196292 46 + TSS region transcription start site region 120554
Tssr120555 13 85197244 to 85197252 8 + TSS region transcription start site region 120555
Rasa1 13 85214780 to 85289130 74350 - protein coding gene RAS p21 protein activator 1
Tssr123353 13 85216076 to 85216089 13 - TSS region transcription start site region 123353
Tssr123354 13 85245118 to 85245124 6 - TSS region transcription start site region 123354
Tssr123355 13 85258357 to 85258376 19 - TSS region transcription start site region 123355
Tssr123356 13 85282895 to 85282901 6 - TSS region transcription start site region 123356
Tssr123357 13 85284075 to 85284102 27 - TSS region transcription start site region 123357
Tssr123358 13 85284628 to 85284636 8 - TSS region transcription start site region 123358
Tssr123359 13 85285459 to 85285464 5 - TSS region transcription start site region 123359
Tssr123360 13 85285759 to 85285776 17 - TSS region transcription start site region 123360
Tssr123361 13 85288031 to 85288042 11 - TSS region transcription start site region 123361
Cpgi5917 13 85288288 to 85289843 1555 CpG island CpG island 5917
Tssr123362 13 85288999 to 85289058 59 - TSS region transcription start site region 123362
Tssr123363 13 85289082 to 85289136 54 - TSS region transcription start site region 123363
Tssr123364 13 85289155 to 85289165 10 - TSS region transcription start site region 123364
Tssr123365 13 85289190 to 85289236 46 - TSS region transcription start site region 123365
Tssr123366 13 85289324 to 85289406 82 - TSS region transcription start site region 123366
Tssr123367 13 85289461 to 85289491 30 - TSS region transcription start site region 123367
D13Mit126 13 85333752 to 85333890 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 126
Gm37641 13 85411681 to 85411919 238 - unclassified gene predicted gene, 37641
Gm47635 13 85516402 to 85516619 217 + pseudogene predicted gene, 47635
Tssr123368 13 85538314 to 85538316 2 - TSS region transcription start site region 123368
Gm5666 13 85572976 to 85573578 602 - pseudogene predicted gene 5666
Gm47636 13 85865112 to 85865333 221 - pseudogene predicted gene, 47636
Gm46396 13 85891742 to 85892125 383 + pseudogene predicted gene, 46396
D13Mit314 13 85929019 to 85929131 112 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 314
Gm34526 13 86017038 to 86038907 21869 - lncRNA gene predicted gene, 34526
Cox7c 13 86044798 to 86046795 1997 - protein coding gene cytochrome c oxidase subunit 7C
Gm22574 13 86044989 to 86045048 59 - snoRNA gene predicted gene, 22574
D13Ertd332e 13 86045007 to 86045211 204 DNA segment DNA segment, Chr 13, ERATO Doi 332, expressed
Cpgi5918 13 86046262 to 86046944 682 CpG island CpG island 5918
Tssr123369 13 86046772 to 86046800 28 - TSS region transcription start site region 123369
Tssr123370 13 86046901 to 86046904 3 - TSS region transcription start site region 123370
Tssr123371 13 86050352 to 86050396 44 - TSS region transcription start site region 123371
Tssr123372 13 86054214 to 86054227 13 - TSS region transcription start site region 123372
Tssr120556 13 86160129 to 86160130 1 + TSS region transcription start site region 120556
Gm27025 13 86235827 to 86237727 1900 + pseudogene predicted gene, 27025
Gm25700 13 86725823 to 86725932 109 - miRNA gene predicted gene, 25700