Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:80887732-82427846

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arrdc3 13 80883384 to 80896042 12658 + protein coding gene arrestin domain containing 3
Tssr120476 13 80893797 to 80893807 10 + TSS region transcription start site region 120476
5430425K12Rik 13 80940411 to 80948597 8186 + lincRNA gene RIKEN cDNA 5430425K12 gene
Tssr4129 13 80941113 to 80941124 11 + TSS region transcription start site region 4129
Gm4211 13 80957664 to 80961434 3770 - lincRNA gene predicted gene 4211
Tssr123311 13 80960832 to 80960841 9 - TSS region transcription start site region 123311
Cpgi5893 13 80962788 to 80963274 486 CpG island CpG island 5893
Tssr120477 13 80963063 to 80963082 19 + TSS region transcription start site region 120477
Tssr120478 13 80963104 to 80963122 18 + TSS region transcription start site region 120478
9330111N05Rik 13 80964074 to 81079857 115783 + antisense lncRNA gene RIKEN cDNA 9330111N05 gene
Gm49375 13 80979470 to 80983873 4403 + lincRNA gene predicted gene, 49375
Gm48568 13 80992551 to 80992800 249 + pseudogene predicted gene, 48568
Tssr123312 13 81004461 to 81004462 1 - TSS region transcription start site region 123312
Gm48549 13 81016196 to 81016560 364 - pseudogene predicted gene, 48549
Gm4813 13 81029103 to 81029901 798 - pseudogene predicted gene 4813
Tssr120479 13 81064604 to 81064607 3 + TSS region transcription start site region 120479
Gm8399 13 81064684 to 81065800 1116 + pseudogene predicted gene 8399
Gm25241 13 81065477 to 81065560 83 + miRNA gene predicted gene, 25241
Gm18517 13 81086607 to 81087675 1068 - pseudogene predicted gene, 18517
Adgrv1 13 81095068 to 81633154 538086 - protein coding gene adhesion G protein-coupled receptor V1
Skull20 13 81102702 to 81102826 124 QTL skull morphology 20
D13Mit9 13 81102702 to 81102826 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 9
Skl6 13 81102702 to 81102826 124 QTL skeletal size (tail length) 6
Gm32639 13 81103406 to 81128868 25462 + lncRNA gene predicted gene, 32639
Tssr123313 13 81238893 to 81238907 14 - TSS region transcription start site region 123313
Gm48566 13 81239177 to 81240784 1607 - unclassified gene predicted gene, 48566
Tssr123314 13 81253095 to 81253098 3 - TSS region transcription start site region 123314
Gm48567 13 81500802 to 81501456 654 + pseudogene predicted gene, 48567
2610312I10Rik 13 81512738 to 81513866 1128 unclassified gene RIKEN cDNA 2610312I10 gene
Tssr123315 13 81545268 to 81545273 5 - TSS region transcription start site region 123315
Tssr123316 13 81570653 to 81570671 18 - TSS region transcription start site region 123316
Cpgi5894 13 81632701 to 81633441 740 CpG island CpG island 5894
Tssr123317 13 81633119 to 81633153 34 - TSS region transcription start site region 123317
Tssr123318 13 81633174 to 81633179 5 - TSS region transcription start site region 123318
Tssr123319 13 81657138 to 81657144 6 - TSS region transcription start site region 123319
Cpgi5895 13 81657254 to 81658183 929 CpG island CpG island 5895
Lysmd3 13 81657663 to 81672871 15208 + protein coding gene LysM, putative peptidoglycan-binding, domain containing 3
Tssr120480 13 81657732 to 81657846 114 + TSS region transcription start site region 120480
Polr3g 13 81673843 to 81711013 37170 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide G
Cpgi5896 13 81710757 to 81712164 1407 CpG island CpG island 5896
Tssr123320 13 81710937 to 81711008 71 - TSS region transcription start site region 123320
Tssr123321 13 81711284 to 81711299 15 - TSS region transcription start site region 123321
Tssr123322 13 81711301 to 81711347 46 - TSS region transcription start site region 123322
Tssr120481 13 81711407 to 81711457 50 + TSS region transcription start site region 120481
Mblac2 13 81711417 to 81753275 41858 + protein coding gene metallo-beta-lactamase domain containing 2
Gm48113 13 81723990 to 81725028 1038 - pseudogene predicted gene, 48113
E130101A01Rik 13 81726899 to 81727570 671 unclassified gene RIKEN cDNA E130101A01 gene
Tssr120482 13 81754206 to 81754215 9 + TSS region transcription start site region 120482
Tssr120483 13 81754218 to 81754228 10 + TSS region transcription start site region 120483
Gm17259 13 81778773 to 81783749 4976 - antisense lncRNA gene predicted gene, 17259
Cpgi5897 13 81782845 to 81783987 1142 CpG island CpG island 5897
Tssr120484 13 81783220 to 81783307 87 + TSS region transcription start site region 120484
Cetn3 13 81783249 to 81797157 13908 + protein coding gene centrin 3
Tssr120485 13 81783308 to 81783325 17 + TSS region transcription start site region 120485
Tssr120486 13 81783527 to 81783564 37 + TSS region transcription start site region 120486
Tssr123323 13 81783608 to 81783653 45 - TSS region transcription start site region 123323
Tssr120487 13 81784173 to 81784176 3 + TSS region transcription start site region 120487
Tssr120488 13 81786857 to 81786873 16 + TSS region transcription start site region 120488
Tssr4130 13 81805491 to 81805494 3 + TSS region transcription start site region 4130
Gm32836 13 81825367 to 81827218 1851 - lncRNA gene predicted gene, 32836
Gm41008 13 81871469 to 81873049 1580 + lncRNA gene predicted gene, 41008
F830210D05Rik 13 81927785 to 81929687 1902 - unclassified gene RIKEN cDNA F830210D05 gene
Gm41009 13 82001868 to 82004830 2962 + lncRNA gene predicted gene, 41009
Gm24295 13 82050751 to 82050881 130 + snoRNA gene predicted gene, 24295
Gm48155 13 82089757 to 82258960 169203 + lincRNA gene predicted gene, 48155
Tssr120489 13 82295427 to 82295432 5 + TSS region transcription start site region 120489
Gm4936 13 82378785 to 82379643 858 - pseudogene predicted gene 4936
D13Mit190.2 13 82393149 to 82393290 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 190.2