Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:80874177-81605784

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5891 13 80882728 to 80883538 810 CpG island CpG island 5891
Tssr4125 13 80883358 to 80883376 18 + TSS region transcription start site region 4125
Tssr4126 13 80883379 to 80883386 7 + TSS region transcription start site region 4126
Arrdc3 13 80883384 to 80896042 12658 + protein coding gene arrestin domain containing 3
Tssr120467 13 80883395 to 80883398 3 + TSS region transcription start site region 120467
Tssr120468 13 80883403 to 80883422 19 + TSS region transcription start site region 120468
Tssr4127 13 80883540 to 80883550 10 + TSS region transcription start site region 4127
1700023H06Rik 13 80884224 to 80885524 1300 - unclassified gene RIKEN cDNA 1700023H06 gene
Tssr123306 13 80884726 to 80884745 19 - TSS region transcription start site region 123306
Tssr4128 13 80884920 to 80884952 32 + TSS region transcription start site region 4128
Cpgi5892 13 80885405 to 80886553 1148 CpG island CpG island 5892
Tssr123307 13 80885509 to 80885532 23 - TSS region transcription start site region 123307
Tssr123308 13 80885548 to 80885559 11 - TSS region transcription start site region 123308
Tssr123309 13 80885597 to 80885617 20 - TSS region transcription start site region 123309
Tssr120469 13 80885665 to 80885680 15 + TSS region transcription start site region 120469
Tssr120470 13 80885685 to 80885711 26 + TSS region transcription start site region 120470
Tssr120471 13 80885745 to 80885765 20 + TSS region transcription start site region 120471
Tssr123310 13 80886002 to 80886040 38 - TSS region transcription start site region 123310
Tssr120472 13 80886160 to 80886201 41 + TSS region transcription start site region 120472
Tssr120473 13 80886221 to 80886251 30 + TSS region transcription start site region 120473
Tssr120474 13 80886288 to 80886312 24 + TSS region transcription start site region 120474
Tssr120475 13 80886491 to 80886504 13 + TSS region transcription start site region 120475
Tssr120476 13 80893797 to 80893807 10 + TSS region transcription start site region 120476
5430425K12Rik 13 80940411 to 80948597 8186 + lincRNA gene RIKEN cDNA 5430425K12 gene
Tssr4129 13 80941113 to 80941124 11 + TSS region transcription start site region 4129
Gm4211 13 80957664 to 80961434 3770 - lincRNA gene predicted gene 4211
Tssr123311 13 80960832 to 80960841 9 - TSS region transcription start site region 123311
Cpgi5893 13 80962788 to 80963274 486 CpG island CpG island 5893
Tssr120477 13 80963063 to 80963082 19 + TSS region transcription start site region 120477
Tssr120478 13 80963104 to 80963122 18 + TSS region transcription start site region 120478
9330111N05Rik 13 80964074 to 81079857 115783 + antisense lncRNA gene RIKEN cDNA 9330111N05 gene
Gm49375 13 80979470 to 80983873 4403 + lincRNA gene predicted gene, 49375
Gm48568 13 80992551 to 80992800 249 + pseudogene predicted gene, 48568
Tssr123312 13 81004461 to 81004462 1 - TSS region transcription start site region 123312
Gm48549 13 81016196 to 81016560 364 - pseudogene predicted gene, 48549
Gm4813 13 81029103 to 81029901 798 - pseudogene predicted gene 4813
Tssr120479 13 81064604 to 81064607 3 + TSS region transcription start site region 120479
Gm8399 13 81064684 to 81065800 1116 + pseudogene predicted gene 8399
Gm25241 13 81065477 to 81065560 83 + miRNA gene predicted gene, 25241
Gm18517 13 81086607 to 81087675 1068 - pseudogene predicted gene, 18517
Adgrv1 13 81095068 to 81633154 538086 - protein coding gene adhesion G protein-coupled receptor V1
D13Mit9 13 81102702 to 81102826 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 9
Skull20 13 81102702 to 81102826 124 QTL skull morphology 20
Skl6 13 81102702 to 81102826 124 QTL skeletal size (tail length) 6
Gm32639 13 81103406 to 81128868 25462 + lncRNA gene predicted gene, 32639
Tssr123313 13 81238893 to 81238907 14 - TSS region transcription start site region 123313
Gm48566 13 81239177 to 81240784 1607 - unclassified gene predicted gene, 48566
Tssr123314 13 81253095 to 81253098 3 - TSS region transcription start site region 123314
Gm48567 13 81500802 to 81501456 654 + pseudogene predicted gene, 48567
2610312I10Rik 13 81512738 to 81513866 1128 unclassified gene RIKEN cDNA 2610312I10 gene
Tssr123315 13 81545268 to 81545273 5 - TSS region transcription start site region 123315
Tssr123316 13 81570653 to 81570671 18 - TSS region transcription start site region 123316