Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:78223077-81453843

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A830082K12Rik 13 78198017 to 78236564 38547 + antisense lncRNA gene RIKEN cDNA A830082K12 gene
Tssr120463 13 78235181 to 78235189 8 + TSS region transcription start site region 120463
Gm5042 13 78273469 to 78273952 483 - pseudogene predicted gene 5042
Tssr4123 13 78273989 to 78273992 3 - TSS region transcription start site region 4123
Gm46387 13 78275221 to 78275639 418 - pseudogene predicted gene, 46387
Gm3963 13 78286637 to 78287084 447 - pseudogene predicted gene 3963
Gm41007 13 78316330 to 78319403 3073 + lncRNA gene predicted gene, 41007
Gm6317 13 78372987 to 78379128 6141 - pseudogene predicted gene 6317
Gm48399 13 78374179 to 78384198 10019 + lincRNA gene predicted gene, 48399
Gm31946 13 78427248 to 78442524 15276 + lincRNA gene predicted gene, 31946
Gm32067 13 78483354 to 78562570 79216 + lincRNA gene predicted gene, 32067
Tssr120464 13 78590551 to 78590554 3 + TSS region transcription start site region 120464
Gm48402 13 78638017 to 78643064 5047 + lincRNA gene predicted gene, 48402
D13Mit201 13 78680726 to 78680851 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 201
D13Mit225 13 78688559 to 78688681 122 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 225
Gm8345 13 78953082 to 78954148 1066 - pseudogene predicted gene 8345
Tssr123305 13 78954846 to 78954866 20 - TSS region transcription start site region 123305
Tssr4124 13 79022615 to 79022616 1 + TSS region transcription start site region 4124
Gm25383 13 79161719 to 79161862 143 + snoRNA gene predicted gene, 25383
Gm29318 13 79285712 to 79298242 12530 + lincRNA gene predicted gene 29318
Gm38349 13 79294878 to 79295339 461 - unclassified gene predicted gene, 38349
Gm48470 13 79441143 to 79441407 264 - pseudogene predicted gene, 48470
Gm24863 13 79454970 to 79455076 106 + snRNA gene predicted gene, 24863
Gm48471 13 79838077 to 79838843 766 + pseudogene predicted gene, 48471
Gm28526 13 79873085 to 80130468 257383 - lincRNA gene predicted gene 28526
Gm19320 13 79878462 to 79878934 472 + pseudogene predicted gene, 19320
Gm5197 13 80098222 to 80099418 1196 - pseudogene predicted gene 5197
Tssr120465 13 80158662 to 80158665 3 + TSS region transcription start site region 120465
Gm24635 13 80158663 to 80158790 127 + snRNA gene predicted gene, 24635
Gm8371 13 80161328 to 80161879 551 + pseudogene predicted gene 8371
Tssr120466 13 80207653 to 80207656 3 + TSS region transcription start site region 120466
Gm46388 13 80493009 to 80493484 475 + pseudogene predicted gene, 46388
D13Mit125 13 80722755 to 80722947 192 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 125
D13Mit103 13 80759095 to 80759230 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 103
D13Mit102 13 80868090 to 80868307 217 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 102
Cpgi5891 13 80882728 to 80883538 810 CpG island CpG island 5891
Tssr4125 13 80883358 to 80883376 18 + TSS region transcription start site region 4125
Tssr4126 13 80883379 to 80883386 7 + TSS region transcription start site region 4126
Arrdc3 13 80883384 to 80896042 12658 + protein coding gene arrestin domain containing 3
Tssr120467 13 80883395 to 80883398 3 + TSS region transcription start site region 120467
Tssr120468 13 80883403 to 80883422 19 + TSS region transcription start site region 120468
Tssr4127 13 80883540 to 80883550 10 + TSS region transcription start site region 4127
1700023H06Rik 13 80884224 to 80885524 1300 - unclassified gene RIKEN cDNA 1700023H06 gene
Tssr123306 13 80884726 to 80884745 19 - TSS region transcription start site region 123306
Tssr4128 13 80884920 to 80884952 32 + TSS region transcription start site region 4128
Cpgi5892 13 80885405 to 80886553 1148 CpG island CpG island 5892
Tssr123307 13 80885509 to 80885532 23 - TSS region transcription start site region 123307
Tssr123308 13 80885548 to 80885559 11 - TSS region transcription start site region 123308
Tssr123309 13 80885597 to 80885617 20 - TSS region transcription start site region 123309
Tssr120469 13 80885665 to 80885680 15 + TSS region transcription start site region 120469
Tssr120470 13 80885685 to 80885711 26 + TSS region transcription start site region 120470
Tssr120471 13 80885745 to 80885765 20 + TSS region transcription start site region 120471
Tssr123310 13 80886002 to 80886040 38 - TSS region transcription start site region 123310
Tssr120472 13 80886160 to 80886201 41 + TSS region transcription start site region 120472
Tssr120473 13 80886221 to 80886251 30 + TSS region transcription start site region 120473
Tssr120474 13 80886288 to 80886312 24 + TSS region transcription start site region 120474
Tssr120475 13 80886491 to 80886504 13 + TSS region transcription start site region 120475
Tssr120476 13 80893797 to 80893807 10 + TSS region transcription start site region 120476
5430425K12Rik 13 80940411 to 80948597 8186 + lincRNA gene RIKEN cDNA 5430425K12 gene
Tssr4129 13 80941113 to 80941124 11 + TSS region transcription start site region 4129
Gm4211 13 80957664 to 80961434 3770 - lincRNA gene predicted gene 4211
Tssr123311 13 80960832 to 80960841 9 - TSS region transcription start site region 123311
Cpgi5893 13 80962788 to 80963274 486 CpG island CpG island 5893
Tssr120477 13 80963063 to 80963082 19 + TSS region transcription start site region 120477
Tssr120478 13 80963104 to 80963122 18 + TSS region transcription start site region 120478
9330111N05Rik 13 80964074 to 81079857 115783 + antisense lncRNA gene RIKEN cDNA 9330111N05 gene
Gm49375 13 80979470 to 80983873 4403 + lincRNA gene predicted gene, 49375
Gm48568 13 80992551 to 80992800 249 + pseudogene predicted gene, 48568
Tssr123312 13 81004461 to 81004462 1 - TSS region transcription start site region 123312
Gm48549 13 81016196 to 81016560 364 - pseudogene predicted gene, 48549
Gm4813 13 81029103 to 81029901 798 - pseudogene predicted gene 4813
Tssr120479 13 81064604 to 81064607 3 + TSS region transcription start site region 120479
Gm8399 13 81064684 to 81065800 1116 + pseudogene predicted gene 8399
Gm25241 13 81065477 to 81065560 83 + miRNA gene predicted gene, 25241
Gm18517 13 81086607 to 81087675 1068 - pseudogene predicted gene, 18517
Adgrv1 13 81095068 to 81633154 538086 - protein coding gene adhesion G protein-coupled receptor V1
D13Mit9 13 81102702 to 81102826 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 9
Skl6 13 81102702 to 81102826 124 QTL skeletal size (tail length) 6
Skull20 13 81102702 to 81102826 124 QTL skull morphology 20
Gm32639 13 81103406 to 81128868 25462 + lncRNA gene predicted gene, 32639
Tssr123313 13 81238893 to 81238907 14 - TSS region transcription start site region 123313
Gm48566 13 81239177 to 81240784 1607 - unclassified gene predicted gene, 48566
Tssr123314 13 81253095 to 81253098 3 - TSS region transcription start site region 123314