Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:78194878-80395339

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr2f1 13 78188971 to 78198982 10011 - protein coding gene nuclear receptor subfamily 2, group F, member 1
Cpgi5886 13 78194541 to 78195907 1366 CpG island CpG island 5886
Tssr123284 13 78196426 to 78196440 14 - TSS region transcription start site region 123284
Tssr123285 13 78196477 to 78196486 9 - TSS region transcription start site region 123285
Cpgi5887 13 78197732 to 78199782 2050 CpG island CpG island 5887
Tssr123286 13 78197815 to 78197850 35 - TSS region transcription start site region 123286
A830082K12Rik 13 78198017 to 78236564 38547 + antisense lncRNA gene RIKEN cDNA A830082K12 gene
Tssr123287 13 78198542 to 78198618 76 - TSS region transcription start site region 123287
Tssr123288 13 78198771 to 78198788 17 - TSS region transcription start site region 123288
Tssr123289 13 78198796 to 78198808 12 - TSS region transcription start site region 123289
Tssr123290 13 78198815 to 78198843 28 - TSS region transcription start site region 123290
Tssr120457 13 78199013 to 78199036 23 + TSS region transcription start site region 120457
Tssr123291 13 78199027 to 78199048 21 - TSS region transcription start site region 123291
Tssr120458 13 78199133 to 78199170 37 + TSS region transcription start site region 120458
Tssr123292 13 78199835 to 78199855 20 - TSS region transcription start site region 123292
Tssr123293 13 78199873 to 78199924 51 - TSS region transcription start site region 123293
Tssr123294 13 78199980 to 78200012 32 - TSS region transcription start site region 123294
Tssr123295 13 78200121 to 78200159 38 - TSS region transcription start site region 123295
Tssr123296 13 78200167 to 78200205 38 - TSS region transcription start site region 123296
Tssr123297 13 78200215 to 78200254 39 - TSS region transcription start site region 123297
Tssr123298 13 78200350 to 78200362 12 - TSS region transcription start site region 123298
Tssr123299 13 78200379 to 78200397 18 - TSS region transcription start site region 123299
Tssr123300 13 78200406 to 78200423 17 - TSS region transcription start site region 123300
Tssr123301 13 78200444 to 78200459 15 - TSS region transcription start site region 123301
Tssr123302 13 78200515 to 78200550 35 - TSS region transcription start site region 123302
Tssr123303 13 78200556 to 78200565 9 - TSS region transcription start site region 123303
Cpgi5888 13 78201629 to 78202240 611 CpG island CpG island 5888
Tssr120459 13 78201955 to 78202004 49 + TSS region transcription start site region 120459
Tssr120460 13 78202364 to 78202388 24 + TSS region transcription start site region 120460
Tssr120461 13 78202636 to 78202661 25 + TSS region transcription start site region 120461
Cpgi5889 13 78202683 to 78204018 1335 CpG island CpG island 5889
Tssr123304 13 78203430 to 78203452 22 - TSS region transcription start site region 123304
Cpgi5890 13 78209985 to 78210847 862 CpG island CpG island 5890
Tssr120462 13 78211471 to 78211479 8 + TSS region transcription start site region 120462
Tssr120463 13 78235181 to 78235189 8 + TSS region transcription start site region 120463
Gm5042 13 78273469 to 78273952 483 - pseudogene predicted gene 5042
Tssr4123 13 78273989 to 78273992 3 - TSS region transcription start site region 4123
Gm46387 13 78275221 to 78275639 418 - pseudogene predicted gene, 46387
Gm3963 13 78286637 to 78287084 447 - pseudogene predicted gene 3963
Gm41007 13 78316330 to 78319403 3073 + lncRNA gene predicted gene, 41007
Gm6317 13 78372987 to 78379128 6141 - pseudogene predicted gene 6317
Gm48399 13 78374179 to 78384198 10019 + lincRNA gene predicted gene, 48399
Gm31946 13 78427248 to 78442524 15276 + lincRNA gene predicted gene, 31946
Gm32067 13 78483354 to 78562570 79216 + lincRNA gene predicted gene, 32067
Tssr120464 13 78590551 to 78590554 3 + TSS region transcription start site region 120464
Gm48402 13 78638017 to 78643064 5047 + lincRNA gene predicted gene, 48402
D13Mit201 13 78680726 to 78680851 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 201
D13Mit225 13 78688559 to 78688681 122 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 225
Gm8345 13 78953082 to 78954148 1066 - pseudogene predicted gene 8345
Tssr123305 13 78954846 to 78954866 20 - TSS region transcription start site region 123305
Tssr4124 13 79022615 to 79022616 1 + TSS region transcription start site region 4124
Gm25383 13 79161719 to 79161862 143 + snoRNA gene predicted gene, 25383
Gm29318 13 79285712 to 79298242 12530 + lincRNA gene predicted gene 29318
Gm38349 13 79294878 to 79295339 461 - unclassified gene predicted gene, 38349
Gm48470 13 79441143 to 79441407 264 - pseudogene predicted gene, 48470
Gm24863 13 79454970 to 79455076 106 + snRNA gene predicted gene, 24863
Gm48471 13 79838077 to 79838843 766 + pseudogene predicted gene, 48471
Gm28526 13 79873085 to 80130468 257383 - lincRNA gene predicted gene 28526
Gm19320 13 79878462 to 79878934 472 + pseudogene predicted gene, 19320
Gm5197 13 80098222 to 80099418 1196 - pseudogene predicted gene 5197
Tssr120465 13 80158662 to 80158665 3 + TSS region transcription start site region 120465
Gm24635 13 80158663 to 80158790 127 + snRNA gene predicted gene, 24635
Gm8371 13 80161328 to 80161879 551 + pseudogene predicted gene 8371
Tssr120466 13 80207653 to 80207656 3 + TSS region transcription start site region 120466