Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:78181330-78454403

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38604 13 78131880 to 78185910 54030 - antisense lncRNA gene predicted gene, 38604
3110006O06Rik 13 78171630 to 78182973 11343 + lincRNA gene RIKEN cDNA 3110006O06 gene
Cpgi5885 13 78181136 to 78181465 329 CpG island CpG island 5885
Tssr123280 13 78183109 to 78183115 6 - TSS region transcription start site region 123280
Tssr123281 13 78183122 to 78183134 12 - TSS region transcription start site region 123281
Tssr123282 13 78183145 to 78183176 31 - TSS region transcription start site region 123282
Tssr123283 13 78183182 to 78183197 15 - TSS region transcription start site region 123283
Nr2f1 13 78188971 to 78198982 10011 - protein coding gene nuclear receptor subfamily 2, group F, member 1
Cpgi5886 13 78194541 to 78195907 1366 CpG island CpG island 5886
Tssr123284 13 78196426 to 78196440 14 - TSS region transcription start site region 123284
Tssr123285 13 78196477 to 78196486 9 - TSS region transcription start site region 123285
Cpgi5887 13 78197732 to 78199782 2050 CpG island CpG island 5887
Tssr123286 13 78197815 to 78197850 35 - TSS region transcription start site region 123286
A830082K12Rik 13 78198017 to 78236564 38547 + antisense lncRNA gene RIKEN cDNA A830082K12 gene
Tssr123287 13 78198542 to 78198618 76 - TSS region transcription start site region 123287
Tssr123288 13 78198771 to 78198788 17 - TSS region transcription start site region 123288
Tssr123289 13 78198796 to 78198808 12 - TSS region transcription start site region 123289
Tssr123290 13 78198815 to 78198843 28 - TSS region transcription start site region 123290
Tssr120457 13 78199013 to 78199036 23 + TSS region transcription start site region 120457
Tssr123291 13 78199027 to 78199048 21 - TSS region transcription start site region 123291
Tssr120458 13 78199133 to 78199170 37 + TSS region transcription start site region 120458
Tssr123292 13 78199835 to 78199855 20 - TSS region transcription start site region 123292
Tssr123293 13 78199873 to 78199924 51 - TSS region transcription start site region 123293
Tssr123294 13 78199980 to 78200012 32 - TSS region transcription start site region 123294
Tssr123295 13 78200121 to 78200159 38 - TSS region transcription start site region 123295
Tssr123296 13 78200167 to 78200205 38 - TSS region transcription start site region 123296
Tssr123297 13 78200215 to 78200254 39 - TSS region transcription start site region 123297
Tssr123298 13 78200350 to 78200362 12 - TSS region transcription start site region 123298
Tssr123299 13 78200379 to 78200397 18 - TSS region transcription start site region 123299
Tssr123300 13 78200406 to 78200423 17 - TSS region transcription start site region 123300
Tssr123301 13 78200444 to 78200459 15 - TSS region transcription start site region 123301
Tssr123302 13 78200515 to 78200550 35 - TSS region transcription start site region 123302
Tssr123303 13 78200556 to 78200565 9 - TSS region transcription start site region 123303
Cpgi5888 13 78201629 to 78202240 611 CpG island CpG island 5888
Tssr120459 13 78201955 to 78202004 49 + TSS region transcription start site region 120459
Tssr120460 13 78202364 to 78202388 24 + TSS region transcription start site region 120460
Tssr120461 13 78202636 to 78202661 25 + TSS region transcription start site region 120461
Cpgi5889 13 78202683 to 78204018 1335 CpG island CpG island 5889
Tssr123304 13 78203430 to 78203452 22 - TSS region transcription start site region 123304
Cpgi5890 13 78209985 to 78210847 862 CpG island CpG island 5890
Tssr120462 13 78211471 to 78211479 8 + TSS region transcription start site region 120462
Tssr120463 13 78235181 to 78235189 8 + TSS region transcription start site region 120463
Gm5042 13 78273469 to 78273952 483 - pseudogene predicted gene 5042
Tssr4123 13 78273989 to 78273992 3 - TSS region transcription start site region 4123
Gm46387 13 78275221 to 78275639 418 - pseudogene predicted gene, 46387
Gm3963 13 78286637 to 78287084 447 - pseudogene predicted gene 3963
Gm41007 13 78316330 to 78319403 3073 + lncRNA gene predicted gene, 41007
Gm6317 13 78372987 to 78379128 6141 - pseudogene predicted gene 6317
Gm48399 13 78374179 to 78384198 10019 + lincRNA gene predicted gene, 48399
Gm31946 13 78427248 to 78442524 15276 + lincRNA gene predicted gene, 31946