Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:77843077-81833843

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam172a 13 77708678 to 78166240 457562 + protein coding gene family with sequence similarity 172, member A
Tssr120447 13 77876425 to 77876435 10 + TSS region transcription start site region 120447
Tssr120448 13 77961326 to 77961328 2 + TSS region transcription start site region 120448
Tssr120449 13 78024878 to 78024887 9 + TSS region transcription start site region 120449
Tssr120450 13 78024892 to 78024913 21 + TSS region transcription start site region 120450
Pou5f2 13 78024902 to 78026295 1393 + protein coding gene POU domain class 5, transcription factor 2
Tssr120451 13 78024915 to 78024924 9 + TSS region transcription start site region 120451
A430105P17Rik 13 78033533 to 78034750 1217 unclassified gene RIKEN cDNA A430105P17 gene
D13Mit68 13 78065382 to 78065538 156 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 68
Gm48254 13 78079388 to 78079856 468 + pseudogene predicted gene, 48254
C130051F05Rik 13 78112482 to 78116319 3837 + unclassified gene RIKEN cDNA C130051F05 gene
Tssr120452 13 78118193 to 78118204 11 + TSS region transcription start site region 120452
Tssr120453 13 78118230 to 78118237 7 + TSS region transcription start site region 120453
Tssr120454 13 78118257 to 78118261 4 + TSS region transcription start site region 120454
Tssr120455 13 78121034 to 78121044 10 + TSS region transcription start site region 120455
Gm18990 13 78121070 to 78122718 1648 + pseudogene predicted gene, 18990
Gm38604 13 78131880 to 78185910 54030 - antisense lncRNA gene predicted gene, 38604
A730087J23Rik 13 78161106 to 78163919 2813 unclassified non-coding RNA gene RIKEN cDNA A730087J23 gene
Cpgi5883 13 78163042 to 78164105 1063 CpG island CpG island 5883
Tssr120456 13 78163097 to 78163106 9 + TSS region transcription start site region 120456
3110006O06Rik 13 78171630 to 78182973 11343 + lincRNA gene RIKEN cDNA 3110006O06 gene
Cpgi5884 13 78179285 to 78179715 430 CpG island CpG island 5884
Cpgi5885 13 78181136 to 78181465 329 CpG island CpG island 5885
Tssr123280 13 78183109 to 78183115 6 - TSS region transcription start site region 123280
Tssr123281 13 78183122 to 78183134 12 - TSS region transcription start site region 123281
Tssr123282 13 78183145 to 78183176 31 - TSS region transcription start site region 123282
Tssr123283 13 78183182 to 78183197 15 - TSS region transcription start site region 123283
Nr2f1 13 78188971 to 78198982 10011 - protein coding gene nuclear receptor subfamily 2, group F, member 1
Cpgi5886 13 78194541 to 78195907 1366 CpG island CpG island 5886
Tssr123284 13 78196426 to 78196440 14 - TSS region transcription start site region 123284
Tssr123285 13 78196477 to 78196486 9 - TSS region transcription start site region 123285
Cpgi5887 13 78197732 to 78199782 2050 CpG island CpG island 5887
Tssr123286 13 78197815 to 78197850 35 - TSS region transcription start site region 123286
A830082K12Rik 13 78198017 to 78236564 38547 + antisense lncRNA gene RIKEN cDNA A830082K12 gene
Tssr123287 13 78198542 to 78198618 76 - TSS region transcription start site region 123287
Tssr123288 13 78198771 to 78198788 17 - TSS region transcription start site region 123288
Tssr123289 13 78198796 to 78198808 12 - TSS region transcription start site region 123289
Tssr123290 13 78198815 to 78198843 28 - TSS region transcription start site region 123290
Tssr120457 13 78199013 to 78199036 23 + TSS region transcription start site region 120457
Tssr123291 13 78199027 to 78199048 21 - TSS region transcription start site region 123291
Tssr120458 13 78199133 to 78199170 37 + TSS region transcription start site region 120458
Tssr123292 13 78199835 to 78199855 20 - TSS region transcription start site region 123292
Tssr123293 13 78199873 to 78199924 51 - TSS region transcription start site region 123293
Tssr123294 13 78199980 to 78200012 32 - TSS region transcription start site region 123294
Tssr123295 13 78200121 to 78200159 38 - TSS region transcription start site region 123295
Tssr123296 13 78200167 to 78200205 38 - TSS region transcription start site region 123296
Tssr123297 13 78200215 to 78200254 39 - TSS region transcription start site region 123297
Tssr123298 13 78200350 to 78200362 12 - TSS region transcription start site region 123298
Tssr123299 13 78200379 to 78200397 18 - TSS region transcription start site region 123299
Tssr123300 13 78200406 to 78200423 17 - TSS region transcription start site region 123300
Tssr123301 13 78200444 to 78200459 15 - TSS region transcription start site region 123301
Tssr123302 13 78200515 to 78200550 35 - TSS region transcription start site region 123302
Tssr123303 13 78200556 to 78200565 9 - TSS region transcription start site region 123303
Cpgi5888 13 78201629 to 78202240 611 CpG island CpG island 5888
Tssr120459 13 78201955 to 78202004 49 + TSS region transcription start site region 120459
Tssr120460 13 78202364 to 78202388 24 + TSS region transcription start site region 120460
Tssr120461 13 78202636 to 78202661 25 + TSS region transcription start site region 120461
Cpgi5889 13 78202683 to 78204018 1335 CpG island CpG island 5889
Tssr123304 13 78203430 to 78203452 22 - TSS region transcription start site region 123304
Cpgi5890 13 78209985 to 78210847 862 CpG island CpG island 5890
Tssr120462 13 78211471 to 78211479 8 + TSS region transcription start site region 120462
Tssr120463 13 78235181 to 78235189 8 + TSS region transcription start site region 120463
Gm5042 13 78273469 to 78273952 483 - pseudogene predicted gene 5042
Tssr4123 13 78273989 to 78273992 3 - TSS region transcription start site region 4123
Gm46387 13 78275221 to 78275639 418 - pseudogene predicted gene, 46387
Gm3963 13 78286637 to 78287084 447 - pseudogene predicted gene 3963
Gm41007 13 78316330 to 78319403 3073 + lncRNA gene predicted gene, 41007
Gm6317 13 78372987 to 78379128 6141 - pseudogene predicted gene 6317
Gm48399 13 78374179 to 78384198 10019 + lincRNA gene predicted gene, 48399
Gm31946 13 78427248 to 78442524 15276 + lincRNA gene predicted gene, 31946
Gm32067 13 78483354 to 78562570 79216 + lincRNA gene predicted gene, 32067
Tssr120464 13 78590551 to 78590554 3 + TSS region transcription start site region 120464
Gm48402 13 78638017 to 78643064 5047 + lincRNA gene predicted gene, 48402
D13Mit201 13 78680726 to 78680851 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 201
D13Mit225 13 78688559 to 78688681 122 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 225
Gm8345 13 78953082 to 78954148 1066 - pseudogene predicted gene 8345
Tssr123305 13 78954846 to 78954866 20 - TSS region transcription start site region 123305
Tssr4124 13 79022615 to 79022616 1 + TSS region transcription start site region 4124
Gm25383 13 79161719 to 79161862 143 + snoRNA gene predicted gene, 25383
Gm29318 13 79285712 to 79298242 12530 + lincRNA gene predicted gene 29318
Gm38349 13 79294878 to 79295339 461 - unclassified gene predicted gene, 38349
Gm48470 13 79441143 to 79441407 264 - pseudogene predicted gene, 48470
Gm24863 13 79454970 to 79455076 106 + snRNA gene predicted gene, 24863
Gm48471 13 79838077 to 79838843 766 + pseudogene predicted gene, 48471
Gm28526 13 79873085 to 80130468 257383 - lincRNA gene predicted gene 28526
Gm19320 13 79878462 to 79878934 472 + pseudogene predicted gene, 19320
Gm5197 13 80098222 to 80099418 1196 - pseudogene predicted gene 5197
Tssr120465 13 80158662 to 80158665 3 + TSS region transcription start site region 120465
Gm24635 13 80158663 to 80158790 127 + snRNA gene predicted gene, 24635
Gm8371 13 80161328 to 80161879 551 + pseudogene predicted gene 8371
Tssr120466 13 80207653 to 80207656 3 + TSS region transcription start site region 120466
Gm46388 13 80493009 to 80493484 475 + pseudogene predicted gene, 46388
D13Mit125 13 80722755 to 80722947 192 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 125
D13Mit103 13 80759095 to 80759230 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 103
D13Mit102 13 80868090 to 80868307 217 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 102
Cpgi5891 13 80882728 to 80883538 810 CpG island CpG island 5891
Tssr4125 13 80883358 to 80883376 18 + TSS region transcription start site region 4125
Tssr4126 13 80883379 to 80883386 7 + TSS region transcription start site region 4126
Arrdc3 13 80883384 to 80896042 12658 + protein coding gene arrestin domain containing 3
Tssr120467 13 80883395 to 80883398 3 + TSS region transcription start site region 120467
Tssr120468 13 80883403 to 80883422 19 + TSS region transcription start site region 120468
Tssr4127 13 80883540 to 80883550 10 + TSS region transcription start site region 4127
1700023H06Rik 13 80884224 to 80885524 1300 - unclassified gene RIKEN cDNA 1700023H06 gene
Tssr123306 13 80884726 to 80884745 19 - TSS region transcription start site region 123306
Tssr4128 13 80884920 to 80884952 32 + TSS region transcription start site region 4128
Cpgi5892 13 80885405 to 80886553 1148 CpG island CpG island 5892
Tssr123307 13 80885509 to 80885532 23 - TSS region transcription start site region 123307
Tssr123308 13 80885548 to 80885559 11 - TSS region transcription start site region 123308
Tssr123309 13 80885597 to 80885617 20 - TSS region transcription start site region 123309
Tssr120469 13 80885665 to 80885680 15 + TSS region transcription start site region 120469
Tssr120470 13 80885685 to 80885711 26 + TSS region transcription start site region 120470
Tssr120471 13 80885745 to 80885765 20 + TSS region transcription start site region 120471
Tssr123310 13 80886002 to 80886040 38 - TSS region transcription start site region 123310
Tssr120472 13 80886160 to 80886201 41 + TSS region transcription start site region 120472
Tssr120473 13 80886221 to 80886251 30 + TSS region transcription start site region 120473
Tssr120474 13 80886288 to 80886312 24 + TSS region transcription start site region 120474
Tssr120475 13 80886491 to 80886504 13 + TSS region transcription start site region 120475
Tssr120476 13 80893797 to 80893807 10 + TSS region transcription start site region 120476
5430425K12Rik 13 80940411 to 80948597 8186 + lincRNA gene RIKEN cDNA 5430425K12 gene
Tssr4129 13 80941113 to 80941124 11 + TSS region transcription start site region 4129
Gm4211 13 80957664 to 80961434 3770 - lincRNA gene predicted gene 4211
Tssr123311 13 80960832 to 80960841 9 - TSS region transcription start site region 123311
Cpgi5893 13 80962788 to 80963274 486 CpG island CpG island 5893
Tssr120477 13 80963063 to 80963082 19 + TSS region transcription start site region 120477
Tssr120478 13 80963104 to 80963122 18 + TSS region transcription start site region 120478
9330111N05Rik 13 80964074 to 81079857 115783 + antisense lncRNA gene RIKEN cDNA 9330111N05 gene
Gm49375 13 80979470 to 80983873 4403 + lincRNA gene predicted gene, 49375
Gm48568 13 80992551 to 80992800 249 + pseudogene predicted gene, 48568
Tssr123312 13 81004461 to 81004462 1 - TSS region transcription start site region 123312
Gm48549 13 81016196 to 81016560 364 - pseudogene predicted gene, 48549
Gm4813 13 81029103 to 81029901 798 - pseudogene predicted gene 4813
Tssr120479 13 81064604 to 81064607 3 + TSS region transcription start site region 120479
Gm8399 13 81064684 to 81065800 1116 + pseudogene predicted gene 8399
Gm25241 13 81065477 to 81065560 83 + miRNA gene predicted gene, 25241
Gm18517 13 81086607 to 81087675 1068 - pseudogene predicted gene, 18517
Adgrv1 13 81095068 to 81633154 538086 - protein coding gene adhesion G protein-coupled receptor V1
D13Mit9 13 81102702 to 81102826 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 9
Skull20 13 81102702 to 81102826 124 QTL skull morphology 20
Skl6 13 81102702 to 81102826 124 QTL skeletal size (tail length) 6
Gm32639 13 81103406 to 81128868 25462 + lncRNA gene predicted gene, 32639
Tssr123313 13 81238893 to 81238907 14 - TSS region transcription start site region 123313
Gm48566 13 81239177 to 81240784 1607 - unclassified gene predicted gene, 48566
Tssr123314 13 81253095 to 81253098 3 - TSS region transcription start site region 123314
Gm48567 13 81500802 to 81501456 654 + pseudogene predicted gene, 48567
2610312I10Rik 13 81512738 to 81513866 1128 unclassified gene RIKEN cDNA 2610312I10 gene
Tssr123315 13 81545268 to 81545273 5 - TSS region transcription start site region 123315
Tssr123316 13 81570653 to 81570671 18 - TSS region transcription start site region 123316
Cpgi5894 13 81632701 to 81633441 740 CpG island CpG island 5894
Tssr123317 13 81633119 to 81633153 34 - TSS region transcription start site region 123317
Tssr123318 13 81633174 to 81633179 5 - TSS region transcription start site region 123318
Tssr123319 13 81657138 to 81657144 6 - TSS region transcription start site region 123319
Cpgi5895 13 81657254 to 81658183 929 CpG island CpG island 5895
Lysmd3 13 81657663 to 81672871 15208 + protein coding gene LysM, putative peptidoglycan-binding, domain containing 3
Tssr120480 13 81657732 to 81657846 114 + TSS region transcription start site region 120480
Polr3g 13 81673843 to 81711013 37170 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide G
Cpgi5896 13 81710757 to 81712164 1407 CpG island CpG island 5896
Tssr123320 13 81710937 to 81711008 71 - TSS region transcription start site region 123320
Tssr123321 13 81711284 to 81711299 15 - TSS region transcription start site region 123321
Tssr123322 13 81711301 to 81711347 46 - TSS region transcription start site region 123322
Tssr120481 13 81711407 to 81711457 50 + TSS region transcription start site region 120481
Mblac2 13 81711417 to 81753275 41858 + protein coding gene metallo-beta-lactamase domain containing 2
Gm48113 13 81723990 to 81725028 1038 - pseudogene predicted gene, 48113
E130101A01Rik 13 81726899 to 81727570 671 unclassified gene RIKEN cDNA E130101A01 gene
Tssr120482 13 81754206 to 81754215 9 + TSS region transcription start site region 120482
Tssr120483 13 81754218 to 81754228 10 + TSS region transcription start site region 120483
Gm17259 13 81778773 to 81783749 4976 - antisense lncRNA gene predicted gene, 17259
Cpgi5897 13 81782845 to 81783987 1142 CpG island CpG island 5897
Tssr120484 13 81783220 to 81783307 87 + TSS region transcription start site region 120484
Cetn3 13 81783249 to 81797157 13908 + protein coding gene centrin 3
Tssr120485 13 81783308 to 81783325 17 + TSS region transcription start site region 120485
Tssr120486 13 81783527 to 81783564 37 + TSS region transcription start site region 120486
Tssr123323 13 81783608 to 81783653 45 - TSS region transcription start site region 123323
Tssr120487 13 81784173 to 81784176 3 + TSS region transcription start site region 120487
Tssr120488 13 81786857 to 81786873 16 + TSS region transcription start site region 120488
Tssr4130 13 81805491 to 81805494 3 + TSS region transcription start site region 4130
Gm32836 13 81825367 to 81827218 1851 - lncRNA gene predicted gene, 32836