Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:77233436-78184051

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2210408I21Rik 13 77135540 to 77613784 478244 + protein coding gene RIKEN cDNA 2210408I21 gene
Tssr120444 13 77438906 to 77438909 3 + TSS region transcription start site region 120444
Tssr123278 13 77438930 to 77438935 5 - TSS region transcription start site region 123278
Tssr120445 13 77438974 to 77439024 50 + TSS region transcription start site region 120445
Tssr123279 13 77439012 to 77439058 46 - TSS region transcription start site region 123279
Gm9634 13 77553610 to 77554373 763 - pseudogene predicted gene 9634
Atp5c1-ps 13 77669074 to 77670435 1361 - pseudogene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, pseudogene
Gm26088 13 77676821 to 77676951 130 + snoRNA gene predicted gene, 26088
Cpgi5882 13 77708436 to 77709051 615 CpG island CpG island 5882
Fam172a 13 77708678 to 78166240 457562 + protein coding gene family with sequence similarity 172, member A
Tssr120446 13 77708683 to 77708740 57 + TSS region transcription start site region 120446
Tssr4122 13 77708743 to 77708750 7 + TSS region transcription start site region 4122
C130063H03Rik 13 77837859 to 77840516 2657 unclassified gene RIKEN cDNA C130063H03 gene
Tssr120447 13 77876425 to 77876435 10 + TSS region transcription start site region 120447
Tssr120448 13 77961326 to 77961328 2 + TSS region transcription start site region 120448
Tssr120449 13 78024878 to 78024887 9 + TSS region transcription start site region 120449
Tssr120450 13 78024892 to 78024913 21 + TSS region transcription start site region 120450
Pou5f2 13 78024902 to 78026295 1393 + protein coding gene POU domain class 5, transcription factor 2
Tssr120451 13 78024915 to 78024924 9 + TSS region transcription start site region 120451
A430105P17Rik 13 78033533 to 78034750 1217 unclassified gene RIKEN cDNA A430105P17 gene
D13Mit68 13 78065382 to 78065538 156 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 68
Gm48254 13 78079388 to 78079856 468 + pseudogene predicted gene, 48254
C130051F05Rik 13 78112482 to 78116319 3837 + unclassified gene RIKEN cDNA C130051F05 gene
Tssr120452 13 78118193 to 78118204 11 + TSS region transcription start site region 120452
Tssr120453 13 78118230 to 78118237 7 + TSS region transcription start site region 120453
Tssr120454 13 78118257 to 78118261 4 + TSS region transcription start site region 120454
Tssr120455 13 78121034 to 78121044 10 + TSS region transcription start site region 120455
Gm18990 13 78121070 to 78122718 1648 + pseudogene predicted gene, 18990
Gm38604 13 78131880 to 78185910 54030 - antisense lncRNA gene predicted gene, 38604
A730087J23Rik 13 78161106 to 78163919 2813 unclassified non-coding RNA gene RIKEN cDNA A730087J23 gene
Cpgi5883 13 78163042 to 78164105 1063 CpG island CpG island 5883
Tssr120456 13 78163097 to 78163106 9 + TSS region transcription start site region 120456
3110006O06Rik 13 78171630 to 78182973 11343 + lincRNA gene RIKEN cDNA 3110006O06 gene
Cpgi5884 13 78179285 to 78179715 430 CpG island CpG island 5884
Cpgi5885 13 78181136 to 78181465 329 CpG island CpG island 5885
Tssr123280 13 78183109 to 78183115 6 - TSS region transcription start site region 123280
Tssr123281 13 78183122 to 78183134 12 - TSS region transcription start site region 123281
Tssr123282 13 78183145 to 78183176 31 - TSS region transcription start site region 123282
Tssr123283 13 78183182 to 78183197 15 - TSS region transcription start site region 123283