Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:77108436-78309051

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slf1 13 77043088 to 77135473 92385 - protein coding gene SMC5-SMC6 complex localization factor 1
Tssr123275 13 77131312 to 77131329 17 - TSS region transcription start site region 123275
Cpgi5881 13 77134989 to 77135853 864 CpG island CpG island 5881
Tssr120442 13 77135064 to 77135114 50 + TSS region transcription start site region 120442
Tssr123276 13 77135416 to 77135491 75 - TSS region transcription start site region 123276
Tssr123277 13 77135497 to 77135514 17 - TSS region transcription start site region 123277
Tssr120443 13 77135513 to 77135583 70 + TSS region transcription start site region 120443
2210408I21Rik 13 77135540 to 77613784 478244 + protein coding gene RIKEN cDNA 2210408I21 gene
Gm29844 13 77169378 to 77169888 510 + pseudogene predicted gene, 29844
Tssr120444 13 77438906 to 77438909 3 + TSS region transcription start site region 120444
Tssr123278 13 77438930 to 77438935 5 - TSS region transcription start site region 123278
Tssr120445 13 77438974 to 77439024 50 + TSS region transcription start site region 120445
Tssr123279 13 77439012 to 77439058 46 - TSS region transcription start site region 123279
Gm9634 13 77553610 to 77554373 763 - pseudogene predicted gene 9634
Atp5c1-ps 13 77669074 to 77670435 1361 - pseudogene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, pseudogene
Gm26088 13 77676821 to 77676951 130 + snoRNA gene predicted gene, 26088
Cpgi5882 13 77708436 to 77709051 615 CpG island CpG island 5882
Fam172a 13 77708678 to 78166240 457562 + protein coding gene family with sequence similarity 172, member A
Tssr120446 13 77708683 to 77708740 57 + TSS region transcription start site region 120446
Tssr4122 13 77708743 to 77708750 7 + TSS region transcription start site region 4122
C130063H03Rik 13 77837859 to 77840516 2657 unclassified gene RIKEN cDNA C130063H03 gene
Tssr120447 13 77876425 to 77876435 10 + TSS region transcription start site region 120447
Tssr120448 13 77961326 to 77961328 2 + TSS region transcription start site region 120448
Tssr120449 13 78024878 to 78024887 9 + TSS region transcription start site region 120449
Tssr120450 13 78024892 to 78024913 21 + TSS region transcription start site region 120450
Pou5f2 13 78024902 to 78026295 1393 + protein coding gene POU domain class 5, transcription factor 2
Tssr120451 13 78024915 to 78024924 9 + TSS region transcription start site region 120451
A430105P17Rik 13 78033533 to 78034750 1217 unclassified gene RIKEN cDNA A430105P17 gene
D13Mit68 13 78065382 to 78065538 156 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 68
Gm48254 13 78079388 to 78079856 468 + pseudogene predicted gene, 48254
C130051F05Rik 13 78112482 to 78116319 3837 + unclassified gene RIKEN cDNA C130051F05 gene
Tssr120452 13 78118193 to 78118204 11 + TSS region transcription start site region 120452
Tssr120453 13 78118230 to 78118237 7 + TSS region transcription start site region 120453
Tssr120454 13 78118257 to 78118261 4 + TSS region transcription start site region 120454
Tssr120455 13 78121034 to 78121044 10 + TSS region transcription start site region 120455
Gm18990 13 78121070 to 78122718 1648 + pseudogene predicted gene, 18990
Gm38604 13 78131880 to 78185910 54030 - antisense lncRNA gene predicted gene, 38604
A730087J23Rik 13 78161106 to 78163919 2813 unclassified non-coding RNA gene RIKEN cDNA A730087J23 gene
Cpgi5883 13 78163042 to 78164105 1063 CpG island CpG island 5883
Tssr120456 13 78163097 to 78163106 9 + TSS region transcription start site region 120456
3110006O06Rik 13 78171630 to 78182973 11343 + lincRNA gene RIKEN cDNA 3110006O06 gene
Cpgi5884 13 78179285 to 78179715 430 CpG island CpG island 5884
Cpgi5885 13 78181136 to 78181465 329 CpG island CpG island 5885
Tssr123280 13 78183109 to 78183115 6 - TSS region transcription start site region 123280
Tssr123281 13 78183122 to 78183134 12 - TSS region transcription start site region 123281
Tssr123282 13 78183145 to 78183176 31 - TSS region transcription start site region 123282
Tssr123283 13 78183182 to 78183197 15 - TSS region transcription start site region 123283
Nr2f1 13 78188971 to 78198982 10011 - protein coding gene nuclear receptor subfamily 2, group F, member 1
Cpgi5886 13 78194541 to 78195907 1366 CpG island CpG island 5886
Tssr123284 13 78196426 to 78196440 14 - TSS region transcription start site region 123284
Tssr123285 13 78196477 to 78196486 9 - TSS region transcription start site region 123285
Cpgi5887 13 78197732 to 78199782 2050 CpG island CpG island 5887
Tssr123286 13 78197815 to 78197850 35 - TSS region transcription start site region 123286
A830082K12Rik 13 78198017 to 78236564 38547 + antisense lncRNA gene RIKEN cDNA A830082K12 gene
Tssr123287 13 78198542 to 78198618 76 - TSS region transcription start site region 123287
Tssr123288 13 78198771 to 78198788 17 - TSS region transcription start site region 123288
Tssr123289 13 78198796 to 78198808 12 - TSS region transcription start site region 123289
Tssr123290 13 78198815 to 78198843 28 - TSS region transcription start site region 123290
Tssr120457 13 78199013 to 78199036 23 + TSS region transcription start site region 120457
Tssr123291 13 78199027 to 78199048 21 - TSS region transcription start site region 123291
Tssr120458 13 78199133 to 78199170 37 + TSS region transcription start site region 120458
Tssr123292 13 78199835 to 78199855 20 - TSS region transcription start site region 123292
Tssr123293 13 78199873 to 78199924 51 - TSS region transcription start site region 123293
Tssr123294 13 78199980 to 78200012 32 - TSS region transcription start site region 123294
Tssr123295 13 78200121 to 78200159 38 - TSS region transcription start site region 123295
Tssr123296 13 78200167 to 78200205 38 - TSS region transcription start site region 123296
Tssr123297 13 78200215 to 78200254 39 - TSS region transcription start site region 123297
Tssr123298 13 78200350 to 78200362 12 - TSS region transcription start site region 123298
Tssr123299 13 78200379 to 78200397 18 - TSS region transcription start site region 123299
Tssr123300 13 78200406 to 78200423 17 - TSS region transcription start site region 123300
Tssr123301 13 78200444 to 78200459 15 - TSS region transcription start site region 123301
Tssr123302 13 78200515 to 78200550 35 - TSS region transcription start site region 123302
Tssr123303 13 78200556 to 78200565 9 - TSS region transcription start site region 123303
Cpgi5888 13 78201629 to 78202240 611 CpG island CpG island 5888
Tssr120459 13 78201955 to 78202004 49 + TSS region transcription start site region 120459
Tssr120460 13 78202364 to 78202388 24 + TSS region transcription start site region 120460
Tssr120461 13 78202636 to 78202661 25 + TSS region transcription start site region 120461
Cpgi5889 13 78202683 to 78204018 1335 CpG island CpG island 5889
Tssr123304 13 78203430 to 78203452 22 - TSS region transcription start site region 123304
Cpgi5890 13 78209985 to 78210847 862 CpG island CpG island 5890
Tssr120462 13 78211471 to 78211479 8 + TSS region transcription start site region 120462
Tssr120463 13 78235181 to 78235189 8 + TSS region transcription start site region 120463
Gm5042 13 78273469 to 78273952 483 - pseudogene predicted gene 5042
Tssr4123 13 78273989 to 78273992 3 - TSS region transcription start site region 4123
Gm46387 13 78275221 to 78275639 418 - pseudogene predicted gene, 46387
Gm3963 13 78286637 to 78287084 447 - pseudogene predicted gene 3963