Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:76695540-78053784

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sgp3 13 56322643 to 76823195 20500552 QTL serum gp70 production 3
Mctp1 13 76384535 to 77031810 647275 + protein coding gene multiple C2 domains, transmembrane 1
Gm15740 13 76696619 to 76697907 1288 + pseudogene predicted gene 15740
Gm18563 13 76700328 to 76702010 1682 - pseudogene predicted gene, 18563
D13Mit99 13 76799396 to 76799600 204 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 99
Tssr4121 13 76803716 to 76803718 2 + TSS region transcription start site region 4121
Tssr120438 13 76817399 to 76817403 4 + TSS region transcription start site region 120438
D13Mit97 13 76823046 to 76823195 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 97
Tssr120439 13 76825198 to 76825208 10 + TSS region transcription start site region 120439
Tssr120440 13 76891465 to 76891513 48 + TSS region transcription start site region 120440
Tssr120441 13 76935095 to 76935110 15 + TSS region transcription start site region 120441
Gm8185 13 76935163 to 76935831 668 + pseudogene predicted gene 8185
Slf1 13 77043088 to 77135473 92385 - protein coding gene SMC5-SMC6 complex localization factor 1
Tssr123272 13 77047405 to 77047418 13 - TSS region transcription start site region 123272
Tssr123273 13 77047625 to 77047675 50 - TSS region transcription start site region 123273
Dps1 13 77047743 to 95594386 18546643 QTL delta power in slow-wave sleep 1
D13Mit231 13 77047743 to 77047863 120 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 231
Tssr123274 13 77101723 to 77101729 6 - TSS region transcription start site region 123274
Tssr123275 13 77131312 to 77131329 17 - TSS region transcription start site region 123275
Cpgi5881 13 77134989 to 77135853 864 CpG island CpG island 5881
Tssr120442 13 77135064 to 77135114 50 + TSS region transcription start site region 120442
Tssr123276 13 77135416 to 77135491 75 - TSS region transcription start site region 123276
Tssr123277 13 77135497 to 77135514 17 - TSS region transcription start site region 123277
Tssr120443 13 77135513 to 77135583 70 + TSS region transcription start site region 120443
2210408I21Rik 13 77135540 to 77613784 478244 + protein coding gene RIKEN cDNA 2210408I21 gene
Gm29844 13 77169378 to 77169888 510 + pseudogene predicted gene, 29844
Tssr120444 13 77438906 to 77438909 3 + TSS region transcription start site region 120444
Tssr123278 13 77438930 to 77438935 5 - TSS region transcription start site region 123278
Tssr120445 13 77438974 to 77439024 50 + TSS region transcription start site region 120445
Tssr123279 13 77439012 to 77439058 46 - TSS region transcription start site region 123279
Gm9634 13 77553610 to 77554373 763 - pseudogene predicted gene 9634
Atp5c1-ps 13 77669074 to 77670435 1361 - pseudogene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, pseudogene
Gm26088 13 77676821 to 77676951 130 + snoRNA gene predicted gene, 26088
Cpgi5882 13 77708436 to 77709051 615 CpG island CpG island 5882
Fam172a 13 77708678 to 78166240 457562 + protein coding gene family with sequence similarity 172, member A
Tssr120446 13 77708683 to 77708740 57 + TSS region transcription start site region 120446
Tssr4122 13 77708743 to 77708750 7 + TSS region transcription start site region 4122
C130063H03Rik 13 77837859 to 77840516 2657 unclassified gene RIKEN cDNA C130063H03 gene
Tssr120447 13 77876425 to 77876435 10 + TSS region transcription start site region 120447
Tssr120448 13 77961326 to 77961328 2 + TSS region transcription start site region 120448
Tssr120449 13 78024878 to 78024887 9 + TSS region transcription start site region 120449
Tssr120450 13 78024892 to 78024913 21 + TSS region transcription start site region 120450
Pou5f2 13 78024902 to 78026295 1393 + protein coding gene POU domain class 5, transcription factor 2
Tssr120451 13 78024915 to 78024924 9 + TSS region transcription start site region 120451
A430105P17Rik 13 78033533 to 78034750 1217 unclassified gene RIKEN cDNA A430105P17 gene