Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:76645540-78103784

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sgp3 13 56322643 to 76823195 20500552 QTL serum gp70 production 3
Mctp1 13 76384535 to 77031810 647275 + protein coding gene multiple C2 domains, transmembrane 1
Gm21959 13 76683982 to 76684433 451 - pseudogene predicted gene, 21959
Gm15740 13 76696619 to 76697907 1288 + pseudogene predicted gene 15740
Gm18563 13 76700328 to 76702010 1682 - pseudogene predicted gene, 18563
D13Mit99 13 76799396 to 76799600 204 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 99
Tssr4121 13 76803716 to 76803718 2 + TSS region transcription start site region 4121
Tssr120438 13 76817399 to 76817403 4 + TSS region transcription start site region 120438
D13Mit97 13 76823046 to 76823195 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 97
Tssr120439 13 76825198 to 76825208 10 + TSS region transcription start site region 120439
Tssr120440 13 76891465 to 76891513 48 + TSS region transcription start site region 120440
Tssr120441 13 76935095 to 76935110 15 + TSS region transcription start site region 120441
Gm8185 13 76935163 to 76935831 668 + pseudogene predicted gene 8185
Slf1 13 77043088 to 77135473 92385 - protein coding gene SMC5-SMC6 complex localization factor 1
Tssr123272 13 77047405 to 77047418 13 - TSS region transcription start site region 123272
Tssr123273 13 77047625 to 77047675 50 - TSS region transcription start site region 123273
D13Mit231 13 77047743 to 77047863 120 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 231
Dps1 13 77047743 to 95594386 18546643 QTL delta power in slow-wave sleep 1
Tssr123274 13 77101723 to 77101729 6 - TSS region transcription start site region 123274
Tssr123275 13 77131312 to 77131329 17 - TSS region transcription start site region 123275
Cpgi5881 13 77134989 to 77135853 864 CpG island CpG island 5881
Tssr120442 13 77135064 to 77135114 50 + TSS region transcription start site region 120442
Tssr123276 13 77135416 to 77135491 75 - TSS region transcription start site region 123276
Tssr123277 13 77135497 to 77135514 17 - TSS region transcription start site region 123277
Tssr120443 13 77135513 to 77135583 70 + TSS region transcription start site region 120443
2210408I21Rik 13 77135540 to 77613784 478244 + protein coding gene RIKEN cDNA 2210408I21 gene
Gm29844 13 77169378 to 77169888 510 + pseudogene predicted gene, 29844
Tssr120444 13 77438906 to 77438909 3 + TSS region transcription start site region 120444
Tssr123278 13 77438930 to 77438935 5 - TSS region transcription start site region 123278
Tssr120445 13 77438974 to 77439024 50 + TSS region transcription start site region 120445
Tssr123279 13 77439012 to 77439058 46 - TSS region transcription start site region 123279
Gm9634 13 77553610 to 77554373 763 - pseudogene predicted gene 9634
Atp5c1-ps 13 77669074 to 77670435 1361 - pseudogene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, pseudogene
Gm26088 13 77676821 to 77676951 130 + snoRNA gene predicted gene, 26088
Cpgi5882 13 77708436 to 77709051 615 CpG island CpG island 5882
Fam172a 13 77708678 to 78166240 457562 + protein coding gene family with sequence similarity 172, member A
Tssr120446 13 77708683 to 77708740 57 + TSS region transcription start site region 120446
Tssr4122 13 77708743 to 77708750 7 + TSS region transcription start site region 4122
C130063H03Rik 13 77837859 to 77840516 2657 unclassified gene RIKEN cDNA C130063H03 gene
Tssr120447 13 77876425 to 77876435 10 + TSS region transcription start site region 120447
Tssr120448 13 77961326 to 77961328 2 + TSS region transcription start site region 120448
Tssr120449 13 78024878 to 78024887 9 + TSS region transcription start site region 120449
Tssr120450 13 78024892 to 78024913 21 + TSS region transcription start site region 120450
Pou5f2 13 78024902 to 78026295 1393 + protein coding gene POU domain class 5, transcription factor 2
Tssr120451 13 78024915 to 78024924 9 + TSS region transcription start site region 120451
A430105P17Rik 13 78033533 to 78034750 1217 unclassified gene RIKEN cDNA A430105P17 gene
D13Mit68 13 78065382 to 78065538 156 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 68
Gm48254 13 78079388 to 78079856 468 + pseudogene predicted gene, 48254