Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:75919078-76849089

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sgp3 13 56322643 to 76823195 20500552 QTL serum gp70 production 3
Rhobtb3 13 75869537 to 75943824 74287 - protein coding gene Rho-related BTB domain containing 3
Tssr123253 13 75920799 to 75920801 2 - TSS region transcription start site region 123253
Gm15528 13 75929465 to 75930328 863 - pseudogene predicted gene 15528
Tssr123254 13 75930037 to 75930057 20 - TSS region transcription start site region 123254
Cpgi5875 13 75930073 to 75930410 337 CpG island CpG island 5875
Tssr123255 13 75930235 to 75930242 7 - TSS region transcription start site region 123255
Tssr123256 13 75942294 to 75942298 4 - TSS region transcription start site region 123256
Cpgi5876 13 75943105 to 75944189 1084 CpG island CpG island 5876
Tssr120412 13 75943257 to 75943273 16 + TSS region transcription start site region 120412
Tssr123257 13 75943674 to 75943696 22 - TSS region transcription start site region 123257
Tssr123258 13 75943700 to 75943760 60 - TSS region transcription start site region 123258
Tssr123259 13 75943812 to 75943950 138 - TSS region transcription start site region 123259
Gm6311 13 75954136 to 75955013 877 + pseudogene predicted gene 6311
Tssr120413 13 75962463 to 75962466 3 + TSS region transcription start site region 120413
Gm23319 13 75963657 to 75963787 130 - snoRNA gene predicted gene, 23319
Spata9 13 75967150 to 75998972 31822 + protein coding gene spermatogenesis associated 9
Tssr120414 13 75967704 to 75967753 49 + TSS region transcription start site region 120414
Tssr120415 13 75967756 to 75967789 33 + TSS region transcription start site region 120415
D13Mit254 13 75984481 to 75984619 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 254
Wra1 13 75984481 to 75984619 138 QTL wheel running activity 1
Rfesd 13 76001535 to 76018712 17177 - protein coding gene Rieske (Fe-S) domain containing
Tssr123260 13 76017546 to 76017563 17 - TSS region transcription start site region 123260
Cpgi5877 13 76018077 to 76018841 764 CpG island CpG island 5877
Tssr123261 13 76018524 to 76018605 81 - TSS region transcription start site region 123261
Tssr123262 13 76018704 to 76018747 43 - TSS region transcription start site region 123262
Tssr120416 13 76018755 to 76018777 22 + TSS region transcription start site region 120416
Gm4165 13 76019807 to 76020110 303 - pseudogene predicted gene 4165
Gpr150 13 76054851 to 76056996 2145 - protein coding gene G protein-coupled receptor 150
Cpgi5878 13 76055415 to 76056971 1556 CpG island CpG island 5878
Tssr120417 13 76055687 to 76055737 50 + TSS region transcription start site region 120417
Tssr123263 13 76056339 to 76056353 14 - TSS region transcription start site region 123263
Arsk 13 76060422 to 76098660 38238 - protein coding gene arylsulfatase K
Gm41006 13 76065583 to 76066279 696 + lncRNA gene predicted gene, 41006
Gm31161 13 76068778 to 76071938 3160 + lncRNA gene predicted gene, 31161
Cpgi5879 13 76098271 to 76099145 874 CpG island CpG island 5879
Tssr123264 13 76098569 to 76098605 36 - TSS region transcription start site region 123264
Tssr123265 13 76098606 to 76098658 52 - TSS region transcription start site region 123265
Ttc37 13 76098734 to 76190316 91582 + protein coding gene tetratricopeptide repeat domain 37
Tssr120418 13 76098763 to 76098774 11 + TSS region transcription start site region 120418
Tssr120419 13 76098775 to 76098809 34 + TSS region transcription start site region 120419
Tssr120420 13 76099878 to 76099881 3 + TSS region transcription start site region 120420
Tssr120421 13 76115272 to 76115278 6 + TSS region transcription start site region 120421
Tssr120422 13 76130193 to 76130202 9 + TSS region transcription start site region 120422
Tssr120423 13 76130268 to 76130295 27 + TSS region transcription start site region 120423
Tssr120424 13 76189073 to 76189079 6 + TSS region transcription start site region 120424
Gm48639 13 76198991 to 76200866 1875 + unclassified gene predicted gene, 48639
Fam81b 13 76201708 to 76278919 77211 - protein coding gene family with sequence similarity 81, member B
Gm31219 13 76255947 to 76278968 23021 + antisense lncRNA gene predicted gene, 31219
Tssr123266 13 76256538 to 76256573 35 - TSS region transcription start site region 123266
Tssr123267 13 76271315 to 76271319 4 - TSS region transcription start site region 123267
Tssr123268 13 76271320 to 76271358 38 - TSS region transcription start site region 123268
Tssr123269 13 76271906 to 76271913 7 - TSS region transcription start site region 123269
Tssr123270 13 76271938 to 76271953 15 - TSS region transcription start site region 123270
Gm31516 13 76300825 to 76308553 7728 + lncRNA gene predicted gene, 31516
Gm24025 13 76321204 to 76321279 75 - miRNA gene predicted gene, 24025
Tssr120425 13 76340734 to 76340745 11 + TSS region transcription start site region 120425
Cpgi5880 13 76383815 to 76385395 1580 CpG island CpG island 5880
Tssr120426 13 76384078 to 76384089 11 + TSS region transcription start site region 120426
Tssr120427 13 76384133 to 76384150 17 + TSS region transcription start site region 120427
Tssr120428 13 76384196 to 76384209 13 + TSS region transcription start site region 120428
Tssr120429 13 76384353 to 76384392 39 + TSS region transcription start site region 120429
Mctp1 13 76384535 to 77031810 647275 + protein coding gene multiple C2 domains, transmembrane 1
Tssr123271 13 76385238 to 76385248 10 - TSS region transcription start site region 123271
Gm18314 13 76414386 to 76415344 958 - pseudogene predicted gene, 18314
Tssr120430 13 76420568 to 76420575 7 + TSS region transcription start site region 120430
Gm48078 13 76439331 to 76439670 339 + pseudogene predicted gene, 48078
Tssr120431 13 76443670 to 76443675 5 + TSS region transcription start site region 120431
D13Dcr13 13 76455691 to 76455787 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 13
Tssr120432 13 76456550 to 76456575 25 + TSS region transcription start site region 120432
Tssr120433 13 76472172 to 76472181 9 + TSS region transcription start site region 120433
Gm46431 13 76507644 to 76516272 8628 + lncRNA gene predicted gene, 46431
Tssr120434 13 76510622 to 76510671 49 + TSS region transcription start site region 120434
Tssr120435 13 76579589 to 76579622 33 + TSS region transcription start site region 120435
Tssr120436 13 76579670 to 76579678 8 + TSS region transcription start site region 120436
Tssr120437 13 76579681 to 76579686 5 + TSS region transcription start site region 120437
Gm24519 13 76604319 to 76604450 131 - snoRNA gene predicted gene, 24519
Gm21959 13 76683982 to 76684433 451 - pseudogene predicted gene, 21959
Gm15740 13 76696619 to 76697907 1288 + pseudogene predicted gene 15740
Gm18563 13 76700328 to 76702010 1682 - pseudogene predicted gene, 18563
D13Mit99 13 76799396 to 76799600 204 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 99
Tssr4121 13 76803716 to 76803718 2 + TSS region transcription start site region 4121
Tssr120438 13 76817399 to 76817403 4 + TSS region transcription start site region 120438
D13Mit97 13 76823046 to 76823195 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 97
Tssr120439 13 76825198 to 76825208 10 + TSS region transcription start site region 120439
Mol3 13 112294569 to 75984481 -36310088 QTL modifier of LPS-response 3