Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:74784851-77326996

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sgp3 13 56322643 to 76823195 20500552 QTL serum gp70 production 3
Cast 13 74692368 to 74808810 116442 - protein coding gene calpastatin
Cpgi5871 13 74807563 to 74808724 1161 CpG island CpG island 5871
Tssr123242 13 74807884 to 74807899 15 - TSS region transcription start site region 123242
Tssr123243 13 74807913 to 74807989 76 - TSS region transcription start site region 123243
Tssr123244 13 74808527 to 74808540 13 - TSS region transcription start site region 123244
Tssr123245 13 74808544 to 74808558 14 - TSS region transcription start site region 123245
Tssr123246 13 74808559 to 74808572 13 - TSS region transcription start site region 123246
Tssr123247 13 74808610 to 74808680 70 - TSS region transcription start site region 123247
Tssr123248 13 74808733 to 74808754 21 - TSS region transcription start site region 123248
Tssr123249 13 74808761 to 74808772 11 - TSS region transcription start site region 123249
Tssr123250 13 74808807 to 74808849 42 - TSS region transcription start site region 123250
Tssr123251 13 74808852 to 74808887 35 - TSS region transcription start site region 123251
Hnrnpa1l2-ps 13 74864305 to 74865356 1051 + pseudogene heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene
D13Mit257 13 74913481 to 74913597 116 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 257
Gm30867 13 74995715 to 75012756 17041 - lncRNA gene predicted gene, 30867
Tssr120364 13 75089369 to 75089380 11 + TSS region transcription start site region 120364
Tssr120365 13 75089638 to 75089655 17 + TSS region transcription start site region 120365
Tssr120366 13 75089675 to 75089682 7 + TSS region transcription start site region 120366
Tssr120367 13 75089820 to 75089833 13 + TSS region transcription start site region 120367
Pcsk1 13 75089826 to 75134861 45035 + protein coding gene proprotein convertase subtilisin/kexin type 1
Tssr120368 13 75089846 to 75089886 40 + TSS region transcription start site region 120368
Tssr120369 13 75089899 to 75089918 19 + TSS region transcription start site region 120369
Tssr120370 13 75089947 to 75089959 12 + TSS region transcription start site region 120370
Cpgi5872 13 75090189 to 75090362 173 CpG island CpG island 5872
Gm19095 13 75199214 to 75199943 729 + pseudogene predicted gene, 19095
Gm48234 13 75479195 to 75479387 192 - pseudogene predicted gene, 48234
Gm48235 13 75509279 to 75510047 768 + pseudogene predicted gene, 48235
Gm8278 13 75515897 to 75518414 2517 - pseudogene predicted gene 8278
Gm3926 13 75523226 to 75524348 1122 - pseudogene predicted gene 3926
Tssr4117 13 75618550 to 75618551 1 + TSS region transcription start site region 4117
D13Mit312 13 75629534 to 75629654 120 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 312
Tssr120371 13 75640156 to 75640164 8 + TSS region transcription start site region 120371
Tssr120372 13 75644863 to 75644867 4 + TSS region transcription start site region 120372
Gm4149 13 75644896 to 75645171 275 + pseudogene predicted pseudogene 4149
Mir682 13 75645046 to 75645141 95 + miRNA gene microRNA 682
Tssr4118 13 75690109 to 75690113 4 + TSS region transcription start site region 4118
Gm23012 13 75691972 to 75692054 82 + snoRNA gene predicted gene, 23012
1700037F03Rik 13 75700162 to 75707172 7010 - antisense lncRNA gene RIKEN cDNA 1700037F03 gene
Tssr120373 13 75704762 to 75704763 1 + TSS region transcription start site region 120373
Cpgi5873 13 75707059 to 75708717 1658 CpG island CpG island 5873
Tssr120374 13 75707388 to 75707399 11 + TSS region transcription start site region 120374
Ell2 13 75707484 to 75772361 64877 + protein coding gene elongation factor RNA polymerase II 2
Tssr120375 13 75707484 to 75707510 26 + TSS region transcription start site region 120375
Tssr120376 13 75707513 to 75707544 31 + TSS region transcription start site region 120376
Tssr120377 13 75707547 to 75707561 14 + TSS region transcription start site region 120377
Tssr120378 13 75707576 to 75707587 11 + TSS region transcription start site region 120378
Tssr120379 13 75711839 to 75711847 8 + TSS region transcription start site region 120379
Gm48302 13 75727279 to 75729162 1883 + sense intronic lncRNA gene predicted gene, 48302
Tssr120380 13 75749900 to 75749907 7 + TSS region transcription start site region 120380
Tssr120381 13 75750049 to 75750061 12 + TSS region transcription start site region 120381
Tssr120382 13 75751808 to 75751822 14 + TSS region transcription start site region 120382
Tssr120383 13 75754612 to 75754652 40 + TSS region transcription start site region 120383
Tssr120384 13 75756331 to 75756347 16 + TSS region transcription start site region 120384
Tssr120385 13 75761873 to 75761889 16 + TSS region transcription start site region 120385
Tssr120386 13 75761915 to 75761927 12 + TSS region transcription start site region 120386
Tssr120387 13 75763799 to 75763818 19 + TSS region transcription start site region 120387
Tssr120388 13 75763889 to 75763911 22 + TSS region transcription start site region 120388
Tssr120389 13 75764040 to 75764060 20 + TSS region transcription start site region 120389
Tssr120390 13 75764063 to 75764082 19 + TSS region transcription start site region 120390
Tssr120391 13 75765118 to 75765124 6 + TSS region transcription start site region 120391
Tssr120392 13 75766166 to 75766170 4 + TSS region transcription start site region 120392
Gm23127 13 75768068 to 75768197 129 + snoRNA gene predicted gene, 23127
Tssr120393 13 75769570 to 75769626 56 + TSS region transcription start site region 120393
Tssr120394 13 75770778 to 75770799 21 + TSS region transcription start site region 120394
Tssr120395 13 75770978 to 75771020 42 + TSS region transcription start site region 120395
Tssr120396 13 75771048 to 75771070 22 + TSS region transcription start site region 120396
Tssr120397 13 75771124 to 75771150 26 + TSS region transcription start site region 120397
Tssr120398 13 75771617 to 75771630 13 + TSS region transcription start site region 120398
Tssr120399 13 75789850 to 75789853 3 + TSS region transcription start site region 120399
Tssr120400 13 75794527 to 75794560 33 + TSS region transcription start site region 120400
Cpgi5874 13 75797815 to 75798109 294 CpG island CpG island 5874
Gm8288 13 75802705 to 75803294 589 + pseudogene predicted gene 8288
Gm41005 13 75818226 to 75847161 28935 - lncRNA gene predicted gene, 41005
Tssr4119 13 75825176 to 75825190 14 + TSS region transcription start site region 4119
Tssr123252 13 75835492 to 75835497 5 - TSS region transcription start site region 123252
Glrx 13 75839873 to 75850151 10278 + protein coding gene glutaredoxin
Tssr120401 13 75839874 to 75839881 7 + TSS region transcription start site region 120401
Tssr120402 13 75839897 to 75839928 31 + TSS region transcription start site region 120402
Tssr120403 13 75840002 to 75840044 42 + TSS region transcription start site region 120403
Tssr120404 13 75840071 to 75840085 14 + TSS region transcription start site region 120404
Tssr120405 13 75845096 to 75845100 4 + TSS region transcription start site region 120405
Tssr120406 13 75845626 to 75845632 6 + TSS region transcription start site region 120406
Tssr120407 13 75847168 to 75847191 23 + TSS region transcription start site region 120407
Tssr120408 13 75849316 to 75849327 11 + TSS region transcription start site region 120408
Tssr120409 13 75849339 to 75849368 29 + TSS region transcription start site region 120409
Tssr120410 13 75849374 to 75849383 9 + TSS region transcription start site region 120410
Tssr120411 13 75849415 to 75849432 17 + TSS region transcription start site region 120411
Rhobtb3 13 75869537 to 75943824 74287 - protein coding gene Rho-related BTB domain containing 3
Gm24163 13 75905147 to 75905278 131 + snoRNA gene predicted gene, 24163
Tssr4120 13 75906862 to 75906863 1 + TSS region transcription start site region 4120
D13Ertd219e 13 75914553 to 75914785 232 DNA segment DNA segment, Chr 13, ERATO Doi 219, expressed
Tssr123253 13 75920799 to 75920801 2 - TSS region transcription start site region 123253
Gm15528 13 75929465 to 75930328 863 - pseudogene predicted gene 15528
Tssr123254 13 75930037 to 75930057 20 - TSS region transcription start site region 123254
Cpgi5875 13 75930073 to 75930410 337 CpG island CpG island 5875
Tssr123255 13 75930235 to 75930242 7 - TSS region transcription start site region 123255
Tssr123256 13 75942294 to 75942298 4 - TSS region transcription start site region 123256
Cpgi5876 13 75943105 to 75944189 1084 CpG island CpG island 5876
Tssr120412 13 75943257 to 75943273 16 + TSS region transcription start site region 120412
Tssr123257 13 75943674 to 75943696 22 - TSS region transcription start site region 123257
Tssr123258 13 75943700 to 75943760 60 - TSS region transcription start site region 123258
Tssr123259 13 75943812 to 75943950 138 - TSS region transcription start site region 123259
Gm6311 13 75954136 to 75955013 877 + pseudogene predicted gene 6311
Tssr120413 13 75962463 to 75962466 3 + TSS region transcription start site region 120413
Gm23319 13 75963657 to 75963787 130 - snoRNA gene predicted gene, 23319
Spata9 13 75967150 to 75998972 31822 + protein coding gene spermatogenesis associated 9
Tssr120414 13 75967704 to 75967753 49 + TSS region transcription start site region 120414
Tssr120415 13 75967756 to 75967789 33 + TSS region transcription start site region 120415
Wra1 13 75984481 to 75984619 138 QTL wheel running activity 1
D13Mit254 13 75984481 to 75984619 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 254
Rfesd 13 76001535 to 76018712 17177 - protein coding gene Rieske (Fe-S) domain containing
Tssr123260 13 76017546 to 76017563 17 - TSS region transcription start site region 123260
Cpgi5877 13 76018077 to 76018841 764 CpG island CpG island 5877
Tssr123261 13 76018524 to 76018605 81 - TSS region transcription start site region 123261
Tssr123262 13 76018704 to 76018747 43 - TSS region transcription start site region 123262
Tssr120416 13 76018755 to 76018777 22 + TSS region transcription start site region 120416
Gm4165 13 76019807 to 76020110 303 - pseudogene predicted gene 4165
Gpr150 13 76054851 to 76056996 2145 - protein coding gene G protein-coupled receptor 150
Cpgi5878 13 76055415 to 76056971 1556 CpG island CpG island 5878
Tssr120417 13 76055687 to 76055737 50 + TSS region transcription start site region 120417
Tssr123263 13 76056339 to 76056353 14 - TSS region transcription start site region 123263
Arsk 13 76060422 to 76098660 38238 - protein coding gene arylsulfatase K
Gm41006 13 76065583 to 76066279 696 + lncRNA gene predicted gene, 41006
Gm31161 13 76068778 to 76071938 3160 + lncRNA gene predicted gene, 31161
Cpgi5879 13 76098271 to 76099145 874 CpG island CpG island 5879
Tssr123264 13 76098569 to 76098605 36 - TSS region transcription start site region 123264
Tssr123265 13 76098606 to 76098658 52 - TSS region transcription start site region 123265
Ttc37 13 76098734 to 76190316 91582 + protein coding gene tetratricopeptide repeat domain 37
Tssr120418 13 76098763 to 76098774 11 + TSS region transcription start site region 120418
Tssr120419 13 76098775 to 76098809 34 + TSS region transcription start site region 120419
Tssr120420 13 76099878 to 76099881 3 + TSS region transcription start site region 120420
Tssr120421 13 76115272 to 76115278 6 + TSS region transcription start site region 120421
Tssr120422 13 76130193 to 76130202 9 + TSS region transcription start site region 120422
Tssr120423 13 76130268 to 76130295 27 + TSS region transcription start site region 120423
Tssr120424 13 76189073 to 76189079 6 + TSS region transcription start site region 120424
Gm48639 13 76198991 to 76200866 1875 + unclassified gene predicted gene, 48639
Fam81b 13 76201708 to 76278919 77211 - protein coding gene family with sequence similarity 81, member B
Gm31219 13 76255947 to 76278968 23021 + antisense lncRNA gene predicted gene, 31219
Tssr123266 13 76256538 to 76256573 35 - TSS region transcription start site region 123266
Tssr123267 13 76271315 to 76271319 4 - TSS region transcription start site region 123267
Tssr123268 13 76271320 to 76271358 38 - TSS region transcription start site region 123268
Tssr123269 13 76271906 to 76271913 7 - TSS region transcription start site region 123269
Tssr123270 13 76271938 to 76271953 15 - TSS region transcription start site region 123270
Gm31516 13 76300825 to 76308553 7728 + lncRNA gene predicted gene, 31516
Gm24025 13 76321204 to 76321279 75 - miRNA gene predicted gene, 24025
Tssr120425 13 76340734 to 76340745 11 + TSS region transcription start site region 120425
Cpgi5880 13 76383815 to 76385395 1580 CpG island CpG island 5880
Tssr120426 13 76384078 to 76384089 11 + TSS region transcription start site region 120426
Tssr120427 13 76384133 to 76384150 17 + TSS region transcription start site region 120427
Tssr120428 13 76384196 to 76384209 13 + TSS region transcription start site region 120428
Tssr120429 13 76384353 to 76384392 39 + TSS region transcription start site region 120429
Mctp1 13 76384535 to 77031810 647275 + protein coding gene multiple C2 domains, transmembrane 1
Tssr123271 13 76385238 to 76385248 10 - TSS region transcription start site region 123271
Gm18314 13 76414386 to 76415344 958 - pseudogene predicted gene, 18314
Tssr120430 13 76420568 to 76420575 7 + TSS region transcription start site region 120430
Gm48078 13 76439331 to 76439670 339 + pseudogene predicted gene, 48078
Tssr120431 13 76443670 to 76443675 5 + TSS region transcription start site region 120431
D13Dcr13 13 76455691 to 76455787 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 13
Tssr120432 13 76456550 to 76456575 25 + TSS region transcription start site region 120432
Tssr120433 13 76472172 to 76472181 9 + TSS region transcription start site region 120433
Gm46431 13 76507644 to 76516272 8628 + lncRNA gene predicted gene, 46431
Tssr120434 13 76510622 to 76510671 49 + TSS region transcription start site region 120434
Tssr120435 13 76579589 to 76579622 33 + TSS region transcription start site region 120435
Tssr120436 13 76579670 to 76579678 8 + TSS region transcription start site region 120436
Tssr120437 13 76579681 to 76579686 5 + TSS region transcription start site region 120437
Gm24519 13 76604319 to 76604450 131 - snoRNA gene predicted gene, 24519
Gm21959 13 76683982 to 76684433 451 - pseudogene predicted gene, 21959
Gm15740 13 76696619 to 76697907 1288 + pseudogene predicted gene 15740
Gm18563 13 76700328 to 76702010 1682 - pseudogene predicted gene, 18563
D13Mit99 13 76799396 to 76799600 204 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 99
Tssr4121 13 76803716 to 76803718 2 + TSS region transcription start site region 4121
Tssr120438 13 76817399 to 76817403 4 + TSS region transcription start site region 120438
D13Mit97 13 76823046 to 76823195 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 97
Tssr120439 13 76825198 to 76825208 10 + TSS region transcription start site region 120439
Tssr120440 13 76891465 to 76891513 48 + TSS region transcription start site region 120440
Tssr120441 13 76935095 to 76935110 15 + TSS region transcription start site region 120441
Gm8185 13 76935163 to 76935831 668 + pseudogene predicted gene 8185
Slf1 13 77043088 to 77135473 92385 - protein coding gene SMC5-SMC6 complex localization factor 1
Tssr123272 13 77047405 to 77047418 13 - TSS region transcription start site region 123272
Tssr123273 13 77047625 to 77047675 50 - TSS region transcription start site region 123273
Dps1 13 77047743 to 95594386 18546643 QTL delta power in slow-wave sleep 1
D13Mit231 13 77047743 to 77047863 120 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 231
Tssr123274 13 77101723 to 77101729 6 - TSS region transcription start site region 123274
Tssr123275 13 77131312 to 77131329 17 - TSS region transcription start site region 123275
Cpgi5881 13 77134989 to 77135853 864 CpG island CpG island 5881
Tssr120442 13 77135064 to 77135114 50 + TSS region transcription start site region 120442
Tssr123276 13 77135416 to 77135491 75 - TSS region transcription start site region 123276
Tssr123277 13 77135497 to 77135514 17 - TSS region transcription start site region 123277
Tssr120443 13 77135513 to 77135583 70 + TSS region transcription start site region 120443
2210408I21Rik 13 77135540 to 77613784 478244 + protein coding gene RIKEN cDNA 2210408I21 gene
Gm29844 13 77169378 to 77169888 510 + pseudogene predicted gene, 29844
Mol3 13 112294569 to 75984481 -36310088 QTL modifier of LPS-response 3