Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:74304866-74974878

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdcd6 13 74303509 to 74317580 14071 - protein coding gene programmed cell death 6
Cpgi5864 13 74316878 to 74317737 859 CpG island CpG island 5864
Tssr123210 13 74317213 to 74317233 20 - TSS region transcription start site region 123210
Tssr123211 13 74317234 to 74317300 66 - TSS region transcription start site region 123211
Sdha 13 74322255 to 74350240 27985 - protein coding gene succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
Tssr123212 13 74333645 to 74333649 4 - TSS region transcription start site region 123212
Tssr123213 13 74337431 to 74337436 5 - TSS region transcription start site region 123213
Gm16125 13 74340539 to 74340877 338 + pseudogene predicted gene 16125
Tssr123214 13 74343384 to 74343404 20 - TSS region transcription start site region 123214
Cpgi5865 13 74349765 to 74350678 913 CpG island CpG island 5865
Tssr123215 13 74350206 to 74350247 41 - TSS region transcription start site region 123215
Tssr120353 13 74350299 to 74350308 9 + TSS region transcription start site region 120353
Tssr120354 13 74350313 to 74350369 56 + TSS region transcription start site region 120354
Ccdc127 13 74350317 to 74365783 15466 + protein coding gene coiled-coil domain containing 127
Lrrc14b 13 74359582 to 74364000 4418 - protein coding gene leucine rich repeat containing 14B
Tssr123216 13 74363920 to 74363927 7 - TSS region transcription start site region 123216
Tssr123217 13 74363937 to 74363948 11 - TSS region transcription start site region 123217
Tssr123218 13 74363971 to 74363986 15 - TSS region transcription start site region 123218
Tssr123219 13 74363993 to 74364010 17 - TSS region transcription start site region 123219
Zfp72 13 74369326 to 74390836 21510 - protein coding gene zinc finger protein 72
Gm8227 13 74381629 to 74382199 570 - pseudogene predicted gene 8227
Tssr123220 13 74390780 to 74390866 86 - TSS region transcription start site region 123220
Gm47428 13 74404183 to 74406737 2554 - antisense lncRNA gene predicted gene, 47428
Tssr120355 13 74406387 to 74406396 9 + TSS region transcription start site region 120355
Ftl1-ps1 13 74406397 to 74407325 928 + pseudogene ferritin light polypeptide 1, pseudogene 1
Tssr120356 13 74406984 to 74407002 18 + TSS region transcription start site region 120356
Mir692-3 13 74407065 to 74407173 108 + miRNA gene microRNA 692-3
Gm41004 13 74408984 to 74416668 7684 - lncRNA gene predicted gene, 41004
E430024I08Rik 13 74434781 to 74463429 28648 - lincRNA gene RIKEN cDNA E430024I08 gene
Cpgi5866 13 74439918 to 74440261 343 CpG island CpG island 5866
Gm47435 13 74440166 to 74440532 366 + pseudogene predicted gene, 47435
Tssr123221 13 74462658 to 74462704 46 - TSS region transcription start site region 123221
Gm49762 13 74474643 to 74476068 1425 + lincRNA gene predicted gene, 49762
Zfp825 13 74480054 to 74493992 13938 - protein coding gene zinc finger protein 825
Tssr123222 13 74493936 to 74493999 63 - TSS region transcription start site region 123222
Cpgi5867 13 74493959 to 74494129 170 CpG island CpG island 5867
Tssr120357 13 74494061 to 74494093 32 + TSS region transcription start site region 120357
Gm49763 13 74494143 to 74498470 4327 + antisense lncRNA gene predicted gene, 49763
Gm20590 13 74505022 to 74570556 65534 - pseudogene predicted gene, 20590
Gm47467 13 74509598 to 74522461 12863 - lincRNA gene predicted gene, 47467
Tssr123223 13 74522423 to 74522443 20 - TSS region transcription start site region 123223
Tssr4116 13 74533514 to 74533557 43 + TSS region transcription start site region 4116
Gm5626 13 74533526 to 74534583 1057 + pseudogene predicted gene 5626
Tssr120358 13 74546548 to 74546582 34 + TSS region transcription start site region 120358
Gm47469 13 74553910 to 74564256 10346 - lincRNA gene predicted gene, 47469
Tssr123224 13 74562089 to 74562092 3 - TSS region transcription start site region 123224
Tssr123225 13 74563807 to 74563827 20 - TSS region transcription start site region 123225
Tssr123226 13 74563843 to 74563861 18 - TSS region transcription start site region 123226
Gm47470 13 74570447 to 74570555 108 - pseudogene predicted gene, 47470
Tssr123227 13 74591363 to 74591397 34 - TSS region transcription start site region 123227
Gm46430 13 74604421 to 74618221 13800 - lincRNA gene predicted gene, 46430
Tssr120359 13 74609225 to 74609237 12 + TSS region transcription start site region 120359
Tssr123228 13 74617265 to 74617284 19 - TSS region transcription start site region 123228
Tssr123229 13 74617289 to 74617326 37 - TSS region transcription start site region 123229
Tssr120360 13 74617811 to 74617834 23 + TSS region transcription start site region 120360
Erap1 13 74639624 to 74692537 52913 + protein coding gene endoplasmic reticulum aminopeptidase 1
Cpgi5869 13 74639761 to 74640409 648 CpG island CpG island 5869
Tssr120361 13 74639834 to 74639864 30 + TSS region transcription start site region 120361
Tssr120362 13 74639866 to 74639878 12 + TSS region transcription start site region 120362
Tssr120363 13 74692220 to 74692237 17 + TSS region transcription start site region 120363
Cast 13 74692368 to 74808810 116442 - protein coding gene calpastatin
Tssr123230 13 74725408 to 74725419 11 - TSS region transcription start site region 123230
Tssr123231 13 74725453 to 74725467 14 - TSS region transcription start site region 123231
Tssr123232 13 74727334 to 74727338 4 - TSS region transcription start site region 123232
Tssr123233 13 74734195 to 74734207 12 - TSS region transcription start site region 123233
Tssr123234 13 74734209 to 74734239 30 - TSS region transcription start site region 123234
Tssr123235 13 74734242 to 74734245 3 - TSS region transcription start site region 123235
Tssr123236 13 74734255 to 74734266 11 - TSS region transcription start site region 123236
Tssr123237 13 74754340 to 74754367 27 - TSS region transcription start site region 123237
Gm6296 13 74767919 to 74768861 942 - pseudogene predicted gene 6296
Tssr123238 13 74768916 to 74768924 8 - TSS region transcription start site region 123238
Cpgi5870 13 74770466 to 74770813 347 CpG island CpG island 5870
Tssr123239 13 74770582 to 74770595 13 - TSS region transcription start site region 123239
Tssr123240 13 74770598 to 74770618 20 - TSS region transcription start site region 123240
Tssr123241 13 74770626 to 74770669 43 - TSS region transcription start site region 123241
Cpgi5871 13 74807563 to 74808724 1161 CpG island CpG island 5871
Tssr123242 13 74807884 to 74807899 15 - TSS region transcription start site region 123242
Tssr123243 13 74807913 to 74807989 76 - TSS region transcription start site region 123243
Tssr123244 13 74808527 to 74808540 13 - TSS region transcription start site region 123244
Tssr123245 13 74808544 to 74808558 14 - TSS region transcription start site region 123245
Tssr123246 13 74808559 to 74808572 13 - TSS region transcription start site region 123246
Tssr123247 13 74808610 to 74808680 70 - TSS region transcription start site region 123247
Tssr123248 13 74808733 to 74808754 21 - TSS region transcription start site region 123248
Tssr123249 13 74808761 to 74808772 11 - TSS region transcription start site region 123249
Tssr123250 13 74808807 to 74808849 42 - TSS region transcription start site region 123250
Tssr123251 13 74808852 to 74808887 35 - TSS region transcription start site region 123251
Hnrnpa1l2-ps 13 74864305 to 74865356 1051 + pseudogene heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene
D13Mit257 13 74913481 to 74913597 116 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 257