Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:74165189-76015362

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc9a3 13 74121457 to 74169442 47985 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 3
Cpgi5860 13 74166816 to 74167188 372 CpG island CpG island 5860
Exoc3 13 74169802 to 74208729 38927 - protein coding gene exocyst complex component 3
Cpgi5861 13 74208336 to 74209238 902 CpG island CpG island 5861
Tssr123207 13 74208661 to 74208719 58 - TSS region transcription start site region 123207
Tssr120351 13 74208734 to 74208757 23 + TSS region transcription start site region 120351
Tssr120352 13 74208759 to 74208795 36 + TSS region transcription start site region 120352
Ahrr 13 74211118 to 74292331 81213 - protein coding gene aryl-hydrocarbon receptor repressor
Tssr123208 13 74220788 to 74220803 15 - TSS region transcription start site region 123208
Cpgi5862 13 74259720 to 74260385 665 CpG island CpG island 5862
Cpgi5863 13 74292143 to 74292587 444 CpG island CpG island 5863
Tssr123209 13 74292283 to 74292343 60 - TSS region transcription start site region 123209
Pdcd6 13 74303509 to 74317580 14071 - protein coding gene programmed cell death 6
Cpgi5864 13 74316878 to 74317737 859 CpG island CpG island 5864
Tssr123210 13 74317213 to 74317233 20 - TSS region transcription start site region 123210
Tssr123211 13 74317234 to 74317300 66 - TSS region transcription start site region 123211
Sdha 13 74322255 to 74350240 27985 - protein coding gene succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
Tssr123212 13 74333645 to 74333649 4 - TSS region transcription start site region 123212
Tssr123213 13 74337431 to 74337436 5 - TSS region transcription start site region 123213
Gm16125 13 74340539 to 74340877 338 + pseudogene predicted gene 16125
Tssr123214 13 74343384 to 74343404 20 - TSS region transcription start site region 123214
Cpgi5865 13 74349765 to 74350678 913 CpG island CpG island 5865
Tssr123215 13 74350206 to 74350247 41 - TSS region transcription start site region 123215
Tssr120353 13 74350299 to 74350308 9 + TSS region transcription start site region 120353
Tssr120354 13 74350313 to 74350369 56 + TSS region transcription start site region 120354
Ccdc127 13 74350317 to 74365783 15466 + protein coding gene coiled-coil domain containing 127
Lrrc14b 13 74359582 to 74364000 4418 - protein coding gene leucine rich repeat containing 14B
Tssr123216 13 74363920 to 74363927 7 - TSS region transcription start site region 123216
Tssr123217 13 74363937 to 74363948 11 - TSS region transcription start site region 123217
Tssr123218 13 74363971 to 74363986 15 - TSS region transcription start site region 123218
Tssr123219 13 74363993 to 74364010 17 - TSS region transcription start site region 123219
Zfp72 13 74369326 to 74390836 21510 - protein coding gene zinc finger protein 72
Gm8227 13 74381629 to 74382199 570 - pseudogene predicted gene 8227
Tssr123220 13 74390780 to 74390866 86 - TSS region transcription start site region 123220
Gm47428 13 74404183 to 74406737 2554 - antisense lncRNA gene predicted gene, 47428
Tssr120355 13 74406387 to 74406396 9 + TSS region transcription start site region 120355
Ftl1-ps1 13 74406397 to 74407325 928 + pseudogene ferritin light polypeptide 1, pseudogene 1
Tssr120356 13 74406984 to 74407002 18 + TSS region transcription start site region 120356
Mir692-3 13 74407065 to 74407173 108 + miRNA gene microRNA 692-3
Gm41004 13 74408984 to 74416668 7684 - lncRNA gene predicted gene, 41004
E430024I08Rik 13 74434781 to 74463429 28648 - lincRNA gene RIKEN cDNA E430024I08 gene
Cpgi5866 13 74439918 to 74440261 343 CpG island CpG island 5866
Gm47435 13 74440166 to 74440532 366 + pseudogene predicted gene, 47435
Tssr123221 13 74462658 to 74462704 46 - TSS region transcription start site region 123221
Gm49762 13 74474643 to 74476068 1425 + lincRNA gene predicted gene, 49762
Zfp825 13 74480054 to 74493992 13938 - protein coding gene zinc finger protein 825
Tssr123222 13 74493936 to 74493999 63 - TSS region transcription start site region 123222
Cpgi5867 13 74493959 to 74494129 170 CpG island CpG island 5867
Tssr120357 13 74494061 to 74494093 32 + TSS region transcription start site region 120357
Gm49763 13 74494143 to 74498470 4327 + antisense lncRNA gene predicted gene, 49763
Gm20590 13 74505022 to 74570556 65534 - pseudogene predicted gene, 20590
Gm47467 13 74509598 to 74522461 12863 - lincRNA gene predicted gene, 47467
Tssr123223 13 74522423 to 74522443 20 - TSS region transcription start site region 123223
Tssr4116 13 74533514 to 74533557 43 + TSS region transcription start site region 4116
Gm5626 13 74533526 to 74534583 1057 + pseudogene predicted gene 5626
Tssr120358 13 74546548 to 74546582 34 + TSS region transcription start site region 120358
Gm47469 13 74553910 to 74564256 10346 - lincRNA gene predicted gene, 47469
Tssr123224 13 74562089 to 74562092 3 - TSS region transcription start site region 123224
Tssr123225 13 74563807 to 74563827 20 - TSS region transcription start site region 123225
Tssr123226 13 74563843 to 74563861 18 - TSS region transcription start site region 123226
Gm47470 13 74570447 to 74570555 108 - pseudogene predicted gene, 47470
Tssr123227 13 74591363 to 74591397 34 - TSS region transcription start site region 123227
Gm46430 13 74604421 to 74618221 13800 - lincRNA gene predicted gene, 46430
Tssr120359 13 74609225 to 74609237 12 + TSS region transcription start site region 120359
Tssr123228 13 74617265 to 74617284 19 - TSS region transcription start site region 123228
Tssr123229 13 74617289 to 74617326 37 - TSS region transcription start site region 123229
Tssr120360 13 74617811 to 74617834 23 + TSS region transcription start site region 120360
Erap1 13 74639624 to 74692537 52913 + protein coding gene endoplasmic reticulum aminopeptidase 1
Cpgi5869 13 74639761 to 74640409 648 CpG island CpG island 5869
Tssr120361 13 74639834 to 74639864 30 + TSS region transcription start site region 120361
Tssr120362 13 74639866 to 74639878 12 + TSS region transcription start site region 120362
Tssr120363 13 74692220 to 74692237 17 + TSS region transcription start site region 120363
Cast 13 74692368 to 74808810 116442 - protein coding gene calpastatin
Tssr123230 13 74725408 to 74725419 11 - TSS region transcription start site region 123230
Tssr123231 13 74725453 to 74725467 14 - TSS region transcription start site region 123231
Tssr123232 13 74727334 to 74727338 4 - TSS region transcription start site region 123232
Tssr123233 13 74734195 to 74734207 12 - TSS region transcription start site region 123233
Tssr123234 13 74734209 to 74734239 30 - TSS region transcription start site region 123234
Tssr123235 13 74734242 to 74734245 3 - TSS region transcription start site region 123235
Tssr123236 13 74734255 to 74734266 11 - TSS region transcription start site region 123236
Tssr123237 13 74754340 to 74754367 27 - TSS region transcription start site region 123237
Gm6296 13 74767919 to 74768861 942 - pseudogene predicted gene 6296
Tssr123238 13 74768916 to 74768924 8 - TSS region transcription start site region 123238
Cpgi5870 13 74770466 to 74770813 347 CpG island CpG island 5870
Tssr123239 13 74770582 to 74770595 13 - TSS region transcription start site region 123239
Tssr123240 13 74770598 to 74770618 20 - TSS region transcription start site region 123240
Tssr123241 13 74770626 to 74770669 43 - TSS region transcription start site region 123241
Cpgi5871 13 74807563 to 74808724 1161 CpG island CpG island 5871
Tssr123242 13 74807884 to 74807899 15 - TSS region transcription start site region 123242
Tssr123243 13 74807913 to 74807989 76 - TSS region transcription start site region 123243
Tssr123244 13 74808527 to 74808540 13 - TSS region transcription start site region 123244
Tssr123245 13 74808544 to 74808558 14 - TSS region transcription start site region 123245
Tssr123246 13 74808559 to 74808572 13 - TSS region transcription start site region 123246
Tssr123247 13 74808610 to 74808680 70 - TSS region transcription start site region 123247
Tssr123248 13 74808733 to 74808754 21 - TSS region transcription start site region 123248
Tssr123249 13 74808761 to 74808772 11 - TSS region transcription start site region 123249
Tssr123250 13 74808807 to 74808849 42 - TSS region transcription start site region 123250
Tssr123251 13 74808852 to 74808887 35 - TSS region transcription start site region 123251
Hnrnpa1l2-ps 13 74864305 to 74865356 1051 + pseudogene heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene
D13Mit257 13 74913481 to 74913597 116 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 257
Gm30867 13 74995715 to 75012756 17041 - lncRNA gene predicted gene, 30867
Tssr120364 13 75089369 to 75089380 11 + TSS region transcription start site region 120364
Tssr120365 13 75089638 to 75089655 17 + TSS region transcription start site region 120365
Tssr120366 13 75089675 to 75089682 7 + TSS region transcription start site region 120366
Tssr120367 13 75089820 to 75089833 13 + TSS region transcription start site region 120367
Pcsk1 13 75089826 to 75134861 45035 + protein coding gene proprotein convertase subtilisin/kexin type 1
Tssr120368 13 75089846 to 75089886 40 + TSS region transcription start site region 120368
Tssr120369 13 75089899 to 75089918 19 + TSS region transcription start site region 120369
Tssr120370 13 75089947 to 75089959 12 + TSS region transcription start site region 120370
Cpgi5872 13 75090189 to 75090362 173 CpG island CpG island 5872
Gm19095 13 75199214 to 75199943 729 + pseudogene predicted gene, 19095
Gm48234 13 75479195 to 75479387 192 - pseudogene predicted gene, 48234
Gm48235 13 75509279 to 75510047 768 + pseudogene predicted gene, 48235
Gm8278 13 75515897 to 75518414 2517 - pseudogene predicted gene 8278
Gm3926 13 75523226 to 75524348 1122 - pseudogene predicted gene 3926
Tssr4117 13 75618550 to 75618551 1 + TSS region transcription start site region 4117
D13Mit312 13 75629534 to 75629654 120 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 312
Tssr120371 13 75640156 to 75640164 8 + TSS region transcription start site region 120371
Tssr120372 13 75644863 to 75644867 4 + TSS region transcription start site region 120372
Gm4149 13 75644896 to 75645171 275 + pseudogene predicted pseudogene 4149
Mir682 13 75645046 to 75645141 95 + miRNA gene microRNA 682
Tssr4118 13 75690109 to 75690113 4 + TSS region transcription start site region 4118
Gm23012 13 75691972 to 75692054 82 + snoRNA gene predicted gene, 23012
1700037F03Rik 13 75700162 to 75707172 7010 - antisense lncRNA gene RIKEN cDNA 1700037F03 gene
Tssr120373 13 75704762 to 75704763 1 + TSS region transcription start site region 120373
Cpgi5873 13 75707059 to 75708717 1658 CpG island CpG island 5873
Tssr120374 13 75707388 to 75707399 11 + TSS region transcription start site region 120374
Tssr120375 13 75707484 to 75707510 26 + TSS region transcription start site region 120375
Ell2 13 75707484 to 75772361 64877 + protein coding gene elongation factor RNA polymerase II 2
Tssr120376 13 75707513 to 75707544 31 + TSS region transcription start site region 120376
Tssr120377 13 75707547 to 75707561 14 + TSS region transcription start site region 120377
Tssr120378 13 75707576 to 75707587 11 + TSS region transcription start site region 120378
Tssr120379 13 75711839 to 75711847 8 + TSS region transcription start site region 120379
Gm48302 13 75727279 to 75729162 1883 + sense intronic lncRNA gene predicted gene, 48302
Tssr120380 13 75749900 to 75749907 7 + TSS region transcription start site region 120380
Tssr120381 13 75750049 to 75750061 12 + TSS region transcription start site region 120381
Tssr120382 13 75751808 to 75751822 14 + TSS region transcription start site region 120382
Tssr120383 13 75754612 to 75754652 40 + TSS region transcription start site region 120383
Tssr120384 13 75756331 to 75756347 16 + TSS region transcription start site region 120384
Tssr120385 13 75761873 to 75761889 16 + TSS region transcription start site region 120385
Tssr120386 13 75761915 to 75761927 12 + TSS region transcription start site region 120386
Tssr120387 13 75763799 to 75763818 19 + TSS region transcription start site region 120387
Tssr120388 13 75763889 to 75763911 22 + TSS region transcription start site region 120388
Tssr120389 13 75764040 to 75764060 20 + TSS region transcription start site region 120389
Tssr120390 13 75764063 to 75764082 19 + TSS region transcription start site region 120390
Tssr120391 13 75765118 to 75765124 6 + TSS region transcription start site region 120391
Tssr120392 13 75766166 to 75766170 4 + TSS region transcription start site region 120392
Gm23127 13 75768068 to 75768197 129 + snoRNA gene predicted gene, 23127
Tssr120393 13 75769570 to 75769626 56 + TSS region transcription start site region 120393
Tssr120394 13 75770778 to 75770799 21 + TSS region transcription start site region 120394
Tssr120395 13 75770978 to 75771020 42 + TSS region transcription start site region 120395
Tssr120396 13 75771048 to 75771070 22 + TSS region transcription start site region 120396
Tssr120397 13 75771124 to 75771150 26 + TSS region transcription start site region 120397
Tssr120398 13 75771617 to 75771630 13 + TSS region transcription start site region 120398
Tssr120399 13 75789850 to 75789853 3 + TSS region transcription start site region 120399
Tssr120400 13 75794527 to 75794560 33 + TSS region transcription start site region 120400
Cpgi5874 13 75797815 to 75798109 294 CpG island CpG island 5874
Gm8288 13 75802705 to 75803294 589 + pseudogene predicted gene 8288
Gm41005 13 75818226 to 75847161 28935 - lncRNA gene predicted gene, 41005
Tssr4119 13 75825176 to 75825190 14 + TSS region transcription start site region 4119
Tssr123252 13 75835492 to 75835497 5 - TSS region transcription start site region 123252
Glrx 13 75839873 to 75850151 10278 + protein coding gene glutaredoxin
Tssr120401 13 75839874 to 75839881 7 + TSS region transcription start site region 120401
Tssr120402 13 75839897 to 75839928 31 + TSS region transcription start site region 120402
Tssr120403 13 75840002 to 75840044 42 + TSS region transcription start site region 120403
Tssr120404 13 75840071 to 75840085 14 + TSS region transcription start site region 120404
Tssr120405 13 75845096 to 75845100 4 + TSS region transcription start site region 120405
Tssr120406 13 75845626 to 75845632 6 + TSS region transcription start site region 120406
Tssr120407 13 75847168 to 75847191 23 + TSS region transcription start site region 120407
Tssr120408 13 75849316 to 75849327 11 + TSS region transcription start site region 120408
Tssr120409 13 75849339 to 75849368 29 + TSS region transcription start site region 120409
Tssr120410 13 75849374 to 75849383 9 + TSS region transcription start site region 120410
Tssr120411 13 75849415 to 75849432 17 + TSS region transcription start site region 120411
Rhobtb3 13 75869537 to 75943824 74287 - protein coding gene Rho-related BTB domain containing 3
Gm24163 13 75905147 to 75905278 131 + snoRNA gene predicted gene, 24163
Tssr4120 13 75906862 to 75906863 1 + TSS region transcription start site region 4120
D13Ertd219e 13 75914553 to 75914785 232 DNA segment DNA segment, Chr 13, ERATO Doi 219, expressed
Tssr123253 13 75920799 to 75920801 2 - TSS region transcription start site region 123253
Gm15528 13 75929465 to 75930328 863 - pseudogene predicted gene 15528
Tssr123254 13 75930037 to 75930057 20 - TSS region transcription start site region 123254
Cpgi5875 13 75930073 to 75930410 337 CpG island CpG island 5875
Tssr123255 13 75930235 to 75930242 7 - TSS region transcription start site region 123255
Tssr123256 13 75942294 to 75942298 4 - TSS region transcription start site region 123256
Cpgi5876 13 75943105 to 75944189 1084 CpG island CpG island 5876
Tssr120412 13 75943257 to 75943273 16 + TSS region transcription start site region 120412
Tssr123257 13 75943674 to 75943696 22 - TSS region transcription start site region 123257
Tssr123258 13 75943700 to 75943760 60 - TSS region transcription start site region 123258
Tssr123259 13 75943812 to 75943950 138 - TSS region transcription start site region 123259
Gm6311 13 75954136 to 75955013 877 + pseudogene predicted gene 6311
Tssr120413 13 75962463 to 75962466 3 + TSS region transcription start site region 120413
Gm23319 13 75963657 to 75963787 130 - snoRNA gene predicted gene, 23319
Spata9 13 75967150 to 75998972 31822 + protein coding gene spermatogenesis associated 9
Tssr120414 13 75967704 to 75967753 49 + TSS region transcription start site region 120414
Tssr120415 13 75967756 to 75967789 33 + TSS region transcription start site region 120415
D13Mit254 13 75984481 to 75984619 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 254
Wra1 13 75984481 to 75984619 138 QTL wheel running activity 1
Rfesd 13 76001535 to 76018712 17177 - protein coding gene Rieske (Fe-S) domain containing
Mol3 13 112294569 to 75984481 -36310088 QTL modifier of LPS-response 3