Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:73898993-74829010

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trip13 13 73912450 to 73937810 25360 - protein coding gene thyroid hormone receptor interactor 13
Gm25197 13 73924585 to 73924710 125 - miRNA gene predicted gene, 25197
Cpgi5856 13 73937102 to 73938229 1127 CpG island CpG island 5856
Tssr123199 13 73937655 to 73937715 60 - TSS region transcription start site region 123199
Tssr123200 13 73937719 to 73937744 25 - TSS region transcription start site region 123200
Tssr123201 13 73937761 to 73937787 26 - TSS region transcription start site region 123201
Tssr120339 13 73937784 to 73937795 11 + TSS region transcription start site region 120339
Tssr120340 13 73937799 to 73937880 81 + TSS region transcription start site region 120340
Brd9 13 73937811 to 73960895 23084 + protein coding gene bromodomain containing 9
Tssr120341 13 73938122 to 73938147 25 + TSS region transcription start site region 120341
Tssr120342 13 73956571 to 73956572 1 + TSS region transcription start site region 120342
Gm41002 13 73958941 to 73963733 4792 - antisense lncRNA gene predicted gene, 41002
Tssr123202 13 73963728 to 73963737 9 - TSS region transcription start site region 123202
Tssr120343 13 73963844 to 73963847 3 + TSS region transcription start site region 120343
Zdhhc11 13 73963847 to 73992985 29138 + protein coding gene zinc finger, DHHC domain containing 11
Tssr120344 13 73963853 to 73963888 35 + TSS region transcription start site region 120344
Gm10126 13 73988966 to 73989133 167 - pseudogene predicted gene 10126
Gm15912 13 74008009 to 74009354 1345 - unclassified non-coding RNA gene predicted gene 15912
D13Mit8.1 13 74008635 to 74008758 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 8.1
Cpgi5857 13 74008871 to 74010489 1618 CpG island CpG island 5857
Tssr123203 13 74009303 to 74009327 24 - TSS region transcription start site region 123203
Tssr123204 13 74009335 to 74009359 24 - TSS region transcription start site region 123204
Tppp 13 74009419 to 74035753 26334 + protein coding gene tubulin polymerization promoting protein
Tssr120345 13 74009430 to 74009453 23 + TSS region transcription start site region 120345
Tssr120346 13 74009460 to 74009483 23 + TSS region transcription start site region 120346
Gm6263 13 74018793 to 74020134 1341 - pseudogene predicted gene 6263
Tssr123205 13 74020202 to 74020206 4 - TSS region transcription start site region 123205
Cep72 13 74036500 to 74062299 25799 - protein coding gene centrosomal protein 72
Cpgi5858 13 74061959 to 74062557 598 CpG island CpG island 5858
Tssr123206 13 74062262 to 74062315 53 - TSS region transcription start site region 123206
Tssr120347 13 74062408 to 74062410 2 + TSS region transcription start site region 120347
0610040A22Rik 13 74120826 to 74121996 1170 unclassified gene RIKEN cDNA 0610040A22 gene
Cpgi5859 13 74121016 to 74121745 729 CpG island CpG island 5859
Tssr120348 13 74121405 to 74121421 16 + TSS region transcription start site region 120348
Tssr120349 13 74121435 to 74121446 11 + TSS region transcription start site region 120349
Slc9a3 13 74121457 to 74169442 47985 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 3
Gm41003 13 74122101 to 74131263 9162 + lncRNA gene predicted gene, 41003
Tssr120350 13 74122518 to 74122534 16 + TSS region transcription start site region 120350
Cpgi5860 13 74166816 to 74167188 372 CpG island CpG island 5860
Exoc3 13 74169802 to 74208729 38927 - protein coding gene exocyst complex component 3
Cpgi5861 13 74208336 to 74209238 902 CpG island CpG island 5861
Tssr123207 13 74208661 to 74208719 58 - TSS region transcription start site region 123207
Tssr120351 13 74208734 to 74208757 23 + TSS region transcription start site region 120351
Tssr120352 13 74208759 to 74208795 36 + TSS region transcription start site region 120352
Ahrr 13 74211118 to 74292331 81213 - protein coding gene aryl-hydrocarbon receptor repressor
Tssr123208 13 74220788 to 74220803 15 - TSS region transcription start site region 123208
Cpgi5862 13 74259720 to 74260385 665 CpG island CpG island 5862
Cpgi5863 13 74292143 to 74292587 444 CpG island CpG island 5863
Tssr123209 13 74292283 to 74292343 60 - TSS region transcription start site region 123209
Pdcd6 13 74303509 to 74317580 14071 - protein coding gene programmed cell death 6
Cpgi5864 13 74316878 to 74317737 859 CpG island CpG island 5864
Tssr123210 13 74317213 to 74317233 20 - TSS region transcription start site region 123210
Tssr123211 13 74317234 to 74317300 66 - TSS region transcription start site region 123211
Sdha 13 74322255 to 74350240 27985 - protein coding gene succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
Tssr123212 13 74333645 to 74333649 4 - TSS region transcription start site region 123212
Tssr123213 13 74337431 to 74337436 5 - TSS region transcription start site region 123213
Gm16125 13 74340539 to 74340877 338 + pseudogene predicted gene 16125
Tssr123214 13 74343384 to 74343404 20 - TSS region transcription start site region 123214
Cpgi5865 13 74349765 to 74350678 913 CpG island CpG island 5865
Tssr123215 13 74350206 to 74350247 41 - TSS region transcription start site region 123215
Tssr120353 13 74350299 to 74350308 9 + TSS region transcription start site region 120353
Tssr120354 13 74350313 to 74350369 56 + TSS region transcription start site region 120354
Ccdc127 13 74350317 to 74365783 15466 + protein coding gene coiled-coil domain containing 127
Lrrc14b 13 74359582 to 74364000 4418 - protein coding gene leucine rich repeat containing 14B
Tssr123216 13 74363920 to 74363927 7 - TSS region transcription start site region 123216
Tssr123217 13 74363937 to 74363948 11 - TSS region transcription start site region 123217
Tssr123218 13 74363971 to 74363986 15 - TSS region transcription start site region 123218
Tssr123219 13 74363993 to 74364010 17 - TSS region transcription start site region 123219
Zfp72 13 74369326 to 74390836 21510 - protein coding gene zinc finger protein 72
Gm8227 13 74381629 to 74382199 570 - pseudogene predicted gene 8227
Tssr123220 13 74390780 to 74390866 86 - TSS region transcription start site region 123220
Gm47428 13 74404183 to 74406737 2554 - antisense lncRNA gene predicted gene, 47428
Tssr120355 13 74406387 to 74406396 9 + TSS region transcription start site region 120355
Ftl1-ps1 13 74406397 to 74407325 928 + pseudogene ferritin light polypeptide 1, pseudogene 1
Tssr120356 13 74406984 to 74407002 18 + TSS region transcription start site region 120356
Mir692-3 13 74407065 to 74407173 108 + miRNA gene microRNA 692-3
Gm41004 13 74408984 to 74416668 7684 - lncRNA gene predicted gene, 41004
E430024I08Rik 13 74434781 to 74463429 28648 - lincRNA gene RIKEN cDNA E430024I08 gene
Cpgi5866 13 74439918 to 74440261 343 CpG island CpG island 5866
Gm47435 13 74440166 to 74440532 366 + pseudogene predicted gene, 47435
Tssr123221 13 74462658 to 74462704 46 - TSS region transcription start site region 123221
Gm49762 13 74474643 to 74476068 1425 + lincRNA gene predicted gene, 49762
Zfp825 13 74480054 to 74493992 13938 - protein coding gene zinc finger protein 825
Tssr123222 13 74493936 to 74493999 63 - TSS region transcription start site region 123222
Cpgi5867 13 74493959 to 74494129 170 CpG island CpG island 5867
Tssr120357 13 74494061 to 74494093 32 + TSS region transcription start site region 120357
Gm49763 13 74494143 to 74498470 4327 + antisense lncRNA gene predicted gene, 49763
Gm20590 13 74505022 to 74570556 65534 - pseudogene predicted gene, 20590
Gm47467 13 74509598 to 74522461 12863 - lincRNA gene predicted gene, 47467
Tssr123223 13 74522423 to 74522443 20 - TSS region transcription start site region 123223
Tssr4116 13 74533514 to 74533557 43 + TSS region transcription start site region 4116
Gm5626 13 74533526 to 74534583 1057 + pseudogene predicted gene 5626
Tssr120358 13 74546548 to 74546582 34 + TSS region transcription start site region 120358
Gm47469 13 74553910 to 74564256 10346 - lincRNA gene predicted gene, 47469
Tssr123224 13 74562089 to 74562092 3 - TSS region transcription start site region 123224
Tssr123225 13 74563807 to 74563827 20 - TSS region transcription start site region 123225
Tssr123226 13 74563843 to 74563861 18 - TSS region transcription start site region 123226
Gm47470 13 74570447 to 74570555 108 - pseudogene predicted gene, 47470
Tssr123227 13 74591363 to 74591397 34 - TSS region transcription start site region 123227
Gm46430 13 74604421 to 74618221 13800 - lincRNA gene predicted gene, 46430
Tssr120359 13 74609225 to 74609237 12 + TSS region transcription start site region 120359
Tssr123228 13 74617265 to 74617284 19 - TSS region transcription start site region 123228
Tssr123229 13 74617289 to 74617326 37 - TSS region transcription start site region 123229
Tssr120360 13 74617811 to 74617834 23 + TSS region transcription start site region 120360
Erap1 13 74639624 to 74692537 52913 + protein coding gene endoplasmic reticulum aminopeptidase 1
Cpgi5869 13 74639761 to 74640409 648 CpG island CpG island 5869
Tssr120361 13 74639834 to 74639864 30 + TSS region transcription start site region 120361
Tssr120362 13 74639866 to 74639878 12 + TSS region transcription start site region 120362
Tssr120363 13 74692220 to 74692237 17 + TSS region transcription start site region 120363
Cast 13 74692368 to 74808810 116442 - protein coding gene calpastatin
Tssr123230 13 74725408 to 74725419 11 - TSS region transcription start site region 123230
Tssr123231 13 74725453 to 74725467 14 - TSS region transcription start site region 123231
Tssr123232 13 74727334 to 74727338 4 - TSS region transcription start site region 123232
Tssr123233 13 74734195 to 74734207 12 - TSS region transcription start site region 123233
Tssr123234 13 74734209 to 74734239 30 - TSS region transcription start site region 123234
Tssr123235 13 74734242 to 74734245 3 - TSS region transcription start site region 123235
Tssr123236 13 74734255 to 74734266 11 - TSS region transcription start site region 123236
Tssr123237 13 74754340 to 74754367 27 - TSS region transcription start site region 123237
Gm6296 13 74767919 to 74768861 942 - pseudogene predicted gene 6296
Tssr123238 13 74768916 to 74768924 8 - TSS region transcription start site region 123238
Cpgi5870 13 74770466 to 74770813 347 CpG island CpG island 5870
Tssr123239 13 74770582 to 74770595 13 - TSS region transcription start site region 123239
Tssr123240 13 74770598 to 74770618 20 - TSS region transcription start site region 123240
Tssr123241 13 74770626 to 74770669 43 - TSS region transcription start site region 123241
Cpgi5871 13 74807563 to 74808724 1161 CpG island CpG island 5871
Tssr123242 13 74807884 to 74807899 15 - TSS region transcription start site region 123242
Tssr123243 13 74807913 to 74807989 76 - TSS region transcription start site region 123243
Tssr123244 13 74808527 to 74808540 13 - TSS region transcription start site region 123244
Tssr123245 13 74808544 to 74808558 14 - TSS region transcription start site region 123245
Tssr123246 13 74808559 to 74808572 13 - TSS region transcription start site region 123246
Tssr123247 13 74808610 to 74808680 70 - TSS region transcription start site region 123247
Tssr123248 13 74808733 to 74808754 21 - TSS region transcription start site region 123248
Tssr123249 13 74808761 to 74808772 11 - TSS region transcription start site region 123249
Tssr123250 13 74808807 to 74808849 42 - TSS region transcription start site region 123250
Tssr123251 13 74808852 to 74808887 35 - TSS region transcription start site region 123251