Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:73528680-73998763

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5849 13 73536182 to 73536982 800 CpG island CpG island 5849
Slc6a3 13 73536747 to 73578672 41925 + protein coding gene solute carrier family 6 (neurotransmitter transporter, dopamine), member 3
Tssr120323 13 73536781 to 73536810 29 + TSS region transcription start site region 120323
Cpgi5850 13 73603718 to 73604763 1045 CpG island CpG island 5850
Tssr123185 13 73603893 to 73603943 50 - TSS region transcription start site region 123185
Tssr120324 13 73603955 to 73603966 11 + TSS region transcription start site region 120324
Clptm1l 13 73604006 to 73620605 16599 + protein coding gene CLPTM1-like
Tssr120325 13 73604007 to 73604120 113 + TSS region transcription start site region 120325
Tssr120326 13 73604135 to 73604146 11 + TSS region transcription start site region 120326
Cpgi5851 13 73626705 to 73627513 808 CpG island CpG island 5851
Tssr120327 13 73626886 to 73626937 51 + TSS region transcription start site region 120327
Tert 13 73626911 to 73649843 22932 + protein coding gene telomerase reverse transcriptase
Tssr120328 13 73627165 to 73627183 18 + TSS region transcription start site region 120328
Tssr120329 13 73627185 to 73627197 12 + TSS region transcription start site region 120329
Tssr120330 13 73648176 to 73648198 22 + TSS region transcription start site region 120330
Slc6a18 13 73661752 to 73678023 16271 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 18
Tssr123186 13 73677989 to 73677998 9 - TSS region transcription start site region 123186
Tssr123187 13 73678005 to 73678026 21 - TSS region transcription start site region 123187
Tssr123188 13 73678029 to 73678040 11 - TSS region transcription start site region 123188
Tssr123189 13 73678155 to 73678180 25 - TSS region transcription start site region 123189
Slc6a19 13 73679745 to 73700695 20950 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 19
Tssr123190 13 73689070 to 73689079 9 - TSS region transcription start site region 123190
Tssr123191 13 73689098 to 73689114 16 - TSS region transcription start site region 123191
Tssr123192 13 73689143 to 73689166 23 - TSS region transcription start site region 123192
Tssr123193 13 73692566 to 73692577 11 - TSS region transcription start site region 123193
Tssr123194 13 73692600 to 73692640 40 - TSS region transcription start site region 123194
Tssr4114 13 73699510 to 73699512 2 + TSS region transcription start site region 4114
Slc6a19os 13 73699826 to 73709853 10027 + antisense lncRNA gene solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand
Tssr120331 13 73699949 to 73699963 14 + TSS region transcription start site region 120331
Tssr123195 13 73700688 to 73700702 14 - TSS region transcription start site region 123195
Tssr123196 13 73700721 to 73700728 7 - TSS region transcription start site region 123196
Tssr120332 13 73703719 to 73703724 5 + TSS region transcription start site region 120332
Cpgi5852 13 73732621 to 73732772 151 CpG island CpG island 5852
Cpgi5853 13 73732867 to 73733494 627 CpG island CpG island 5853
Tssr120333 13 73733051 to 73733103 52 + TSS region transcription start site region 120333
Slc12a7 13 73733094 to 73816754 83660 + protein coding gene solute carrier family 12, member 7
D13Mit255 13 73761134 to 73761266 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 255
Cpgi5854 13 73763117 to 73764399 1282 CpG island CpG island 5854
Tssr120334 13 73763193 to 73763198 5 + TSS region transcription start site region 120334
Tssr123197 13 73763529 to 73763545 16 - TSS region transcription start site region 123197
Tssr120335 13 73763680 to 73763763 83 + TSS region transcription start site region 120335
Tssr120336 13 73770231 to 73770252 21 + TSS region transcription start site region 120336
Tssr120337 13 73772896 to 73772916 20 + TSS region transcription start site region 120337
D13Ertd261e 13 73802319 to 73802568 249 DNA segment DNA segment, Chr 13, ERATO Doi 261, expressed
Nkd2 13 73818534 to 73847631 29097 - protein coding gene naked cuticle 2
Tssr120338 13 73829895 to 73829902 7 + TSS region transcription start site region 120338
Gm8062 13 73829932 to 73830375 443 + pseudogene predicted pseudogene 8062
Cpgi5855 13 73846461 to 73848105 1644 CpG island CpG island 5855
Tssr123198 13 73847603 to 73847619 16 - TSS region transcription start site region 123198
Gm30303 13 73847727 to 73853107 5380 + lncRNA gene predicted gene, 30303
Gm30432 13 73858455 to 73860338 1883 + lncRNA gene predicted gene, 30432
Tssr4115 13 73870745 to 73870747 2 + TSS region transcription start site region 4115
Trip13 13 73912450 to 73937810 25360 - protein coding gene thyroid hormone receptor interactor 13
Gm25197 13 73924585 to 73924710 125 - miRNA gene predicted gene, 25197
Cpgi5856 13 73937102 to 73938229 1127 CpG island CpG island 5856
Tssr123199 13 73937655 to 73937715 60 - TSS region transcription start site region 123199
Tssr123200 13 73937719 to 73937744 25 - TSS region transcription start site region 123200
Tssr123201 13 73937761 to 73937787 26 - TSS region transcription start site region 123201
Tssr120339 13 73937784 to 73937795 11 + TSS region transcription start site region 120339
Tssr120340 13 73937799 to 73937880 81 + TSS region transcription start site region 120340
Brd9 13 73937811 to 73960895 23084 + protein coding gene bromodomain containing 9
Tssr120341 13 73938122 to 73938147 25 + TSS region transcription start site region 120341
Tssr120342 13 73956571 to 73956572 1 + TSS region transcription start site region 120342
Gm41002 13 73958941 to 73963733 4792 - antisense lncRNA gene predicted gene, 41002
Tssr123202 13 73963728 to 73963737 9 - TSS region transcription start site region 123202
Tssr120343 13 73963844 to 73963847 3 + TSS region transcription start site region 120343
Zdhhc11 13 73963847 to 73992985 29138 + protein coding gene zinc finger, DHHC domain containing 11
Tssr120344 13 73963853 to 73963888 35 + TSS region transcription start site region 120344
Gm10126 13 73988966 to 73989133 167 - pseudogene predicted gene 10126