Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:72560189-77620362

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453 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sgp3 13 56322643 to 76823195 20500552 QTL serum gp70 production 3
clf2 13 58806569 to 72634198 13827629 heritable phenotypic marker cleft lip 2
Gm38580 13 72542765 to 72601064 58299 - lncRNA gene predicted gene, 38580
D13Mit48 13 72561859 to 72562003 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 48
Cpgi5829 13 72624018 to 72624494 476 CpG island CpG island 5829
Cpgi5830 13 72625248 to 72625484 236 CpG island CpG island 5830
Gm20554 13 72626213 to 72628564 2351 - lincRNA gene predicted gene, 20554
Cpgi5831 13 72627370 to 72629764 2394 CpG island CpG island 5831
Tssr123170 13 72628485 to 72628505 20 - TSS region transcription start site region 123170
Tssr123171 13 72628563 to 72628586 23 - TSS region transcription start site region 123171
Tssr123172 13 72628590 to 72628607 17 - TSS region transcription start site region 123172
Tssr120305 13 72628786 to 72628795 9 + TSS region transcription start site region 120305
Tssr120306 13 72628802 to 72628825 23 + TSS region transcription start site region 120306
Irx2 13 72628820 to 72634198 5378 + protein coding gene Iroquois homeobox 2
Tssr120307 13 72628831 to 72628848 17 + TSS region transcription start site region 120307
Cpgi5832 13 72630464 to 72632073 1609 CpG island CpG island 5832
Tssr120308 13 72632614 to 72632625 11 + TSS region transcription start site region 120308
Cpgi5833 13 72638430 to 72638716 286 CpG island CpG island 5833
Cpgi5834 13 72639544 to 72640089 545 CpG island CpG island 5834
Gm41001 13 72669467 to 72676554 7087 + lncRNA gene predicted gene, 41001
Tssr120309 13 72702845 to 72702853 8 + TSS region transcription start site region 120309
Gm47890 13 72702849 to 72705392 2543 + unclassified gene predicted gene, 47890
Gm47902 13 72769431 to 72786342 16911 + lincRNA gene predicted gene, 47902
D13Mit25 13 72775952 to 72776101 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 25
D730050B12Rik 13 72809601 to 72816763 7162 - lincRNA gene RIKEN cDNA D730050B12 gene
Tssr123173 13 72839243 to 72839289 46 - TSS region transcription start site region 123173
Cpgi5835 13 72897710 to 72897905 195 CpG island CpG island 5835
Gm30049 13 72932327 to 72939787 7460 - lncRNA gene predicted gene, 30049
D13Mit11 13 72995458 to 72995604 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 11
D13Mit11.3 13 72995603 to 72995713 110 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 11.3
Gm30154 13 73132998 to 73155973 22975 + lncRNA gene predicted gene, 30154
Cpgi5836 13 73160200 to 73160732 532 CpG island CpG island 5836
D13Mit284 13 73178561 to 73178672 111 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 284
4930555K05Rik 13 73206091 to 73229100 23009 - lncRNA gene RIKEN cDNA 4930555K05 gene
Rpl31-ps2 13 73233395 to 73233737 342 + pseudogene ribosomal protein L31, pseudogene 2
Cpgi5837 13 73259911 to 73261334 1423 CpG island CpG island 5837
Tssr120310 13 73260473 to 73260487 14 + TSS region transcription start site region 120310
Irx4 13 73260479 to 73269608 9129 + protein coding gene Iroquois homeobox 4
Tssr120311 13 73260510 to 73260546 36 + TSS region transcription start site region 120311
Tssr120312 13 73260556 to 73260569 13 + TSS region transcription start site region 120312
Cpgi5838 13 73263054 to 73264684 1630 CpG island CpG island 5838
Tssr120313 13 73264602 to 73264603 1 + TSS region transcription start site region 120313
Cpgi5839 13 73265216 to 73265738 522 CpG island CpG island 5839
Cpgi5840 13 73267505 to 73267713 208 CpG island CpG island 5840
Cpgi5841 13 73268347 to 73269529 1182 CpG island CpG island 5841
Cpgi5842 13 73270768 to 73271081 313 CpG island CpG island 5842
Cpgi5843 13 73271390 to 73272189 799 CpG island CpG island 5843
Gm48000 13 73273230 to 73273732 502 + unclassified gene predicted gene, 48000
D13Mit143.1 13 73313133 to 73313307 174 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 143.1
D13Mit143 13 73313310 to 73313452 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 143
Tssr120314 13 73317814 to 73317830 16 + TSS region transcription start site region 120314
Gm10263 13 73317844 to 73318143 299 + pseudogene predicted gene 10263
Ndufs6 13 73319876 to 73328482 8606 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S6
Tssr123174 13 73327960 to 73327976 16 - TSS region transcription start site region 123174
Cpgi5844 13 73328158 to 73328699 541 CpG island CpG island 5844
Tssr123175 13 73328442 to 73328467 25 - TSS region transcription start site region 123175
Tssr120315 13 73328485 to 73328509 24 + TSS region transcription start site region 120315
Tssr120316 13 73328510 to 73328553 43 + TSS region transcription start site region 120316
Cpgi5845 13 73330859 to 73331679 820 CpG island CpG island 5845
Tssr120317 13 73330982 to 73331057 75 + TSS region transcription start site region 120317
Mrpl36 13 73331009 to 73332178 1169 + protein coding gene mitochondrial ribosomal protein L36
Tssr123176 13 73344245 to 73344251 6 - TSS region transcription start site region 123176
Eprn 13 73344665 to 73347384 2719 - lincRNA gene ephemeron, early developmental lncRNA
Tssr123177 13 73346289 to 73346296 7 - TSS region transcription start site region 123177
Tssr123178 13 73346916 to 73346925 9 - TSS region transcription start site region 123178
Tssr123179 13 73346931 to 73346940 9 - TSS region transcription start site region 123179
Tssr123180 13 73346961 to 73346976 15 - TSS region transcription start site region 123180
Tssr123181 13 73347255 to 73347264 9 - TSS region transcription start site region 123181
Tssr123182 13 73347286 to 73347297 11 - TSS region transcription start site region 123182
Tssr123183 13 73347340 to 73347365 25 - TSS region transcription start site region 123183
Tssr123184 13 73347373 to 73347385 12 - TSS region transcription start site region 123184
Cpgi5846 13 73365673 to 73366110 437 CpG island CpG island 5846
Cpgi5847 13 73405839 to 73406134 295 CpG island CpG island 5847
D13Mit1002 13 73444717 to 73444900 183 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1002
Cpgi5848 13 73466987 to 73468115 1128 CpG island CpG island 5848
Lpcat1 13 73467209 to 73516420 49211 + protein coding gene lysophosphatidylcholine acyltransferase 1
Tssr120318 13 73467214 to 73467316 102 + TSS region transcription start site region 120318
Tssr120319 13 73467348 to 73467349 1 + TSS region transcription start site region 120319
Tssr120320 13 73496521 to 73496524 3 + TSS region transcription start site region 120320
Tssr120321 13 73498425 to 73498448 23 + TSS region transcription start site region 120321
Tssr120322 13 73502885 to 73502888 3 + TSS region transcription start site region 120322
Cpgi5849 13 73536182 to 73536982 800 CpG island CpG island 5849
Slc6a3 13 73536747 to 73578672 41925 + protein coding gene solute carrier family 6 (neurotransmitter transporter, dopamine), member 3
Tssr120323 13 73536781 to 73536810 29 + TSS region transcription start site region 120323
Cpgi5850 13 73603718 to 73604763 1045 CpG island CpG island 5850
Tssr123185 13 73603893 to 73603943 50 - TSS region transcription start site region 123185
Tssr120324 13 73603955 to 73603966 11 + TSS region transcription start site region 120324
Clptm1l 13 73604006 to 73620605 16599 + protein coding gene CLPTM1-like
Tssr120325 13 73604007 to 73604120 113 + TSS region transcription start site region 120325
Tssr120326 13 73604135 to 73604146 11 + TSS region transcription start site region 120326
Cpgi5851 13 73626705 to 73627513 808 CpG island CpG island 5851
Tssr120327 13 73626886 to 73626937 51 + TSS region transcription start site region 120327
Tert 13 73626911 to 73649843 22932 + protein coding gene telomerase reverse transcriptase
Tssr120328 13 73627165 to 73627183 18 + TSS region transcription start site region 120328
Tssr120329 13 73627185 to 73627197 12 + TSS region transcription start site region 120329
Tssr120330 13 73648176 to 73648198 22 + TSS region transcription start site region 120330
Slc6a18 13 73661752 to 73678023 16271 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 18
Tssr123186 13 73677989 to 73677998 9 - TSS region transcription start site region 123186
Tssr123187 13 73678005 to 73678026 21 - TSS region transcription start site region 123187
Tssr123188 13 73678029 to 73678040 11 - TSS region transcription start site region 123188
Tssr123189 13 73678155 to 73678180 25 - TSS region transcription start site region 123189
Slc6a19 13 73679745 to 73700695 20950 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 19
Tssr123190 13 73689070 to 73689079 9 - TSS region transcription start site region 123190
Tssr123191 13 73689098 to 73689114 16 - TSS region transcription start site region 123191
Tssr123192 13 73689143 to 73689166 23 - TSS region transcription start site region 123192
Tssr123193 13 73692566 to 73692577 11 - TSS region transcription start site region 123193
Tssr123194 13 73692600 to 73692640 40 - TSS region transcription start site region 123194
Tssr4114 13 73699510 to 73699512 2 + TSS region transcription start site region 4114
Slc6a19os 13 73699826 to 73709853 10027 + antisense lncRNA gene solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand
Tssr120331 13 73699949 to 73699963 14 + TSS region transcription start site region 120331
Tssr123195 13 73700688 to 73700702 14 - TSS region transcription start site region 123195
Tssr123196 13 73700721 to 73700728 7 - TSS region transcription start site region 123196
Tssr120332 13 73703719 to 73703724 5 + TSS region transcription start site region 120332
Cpgi5852 13 73732621 to 73732772 151 CpG island CpG island 5852
Cpgi5853 13 73732867 to 73733494 627 CpG island CpG island 5853
Tssr120333 13 73733051 to 73733103 52 + TSS region transcription start site region 120333
Slc12a7 13 73733094 to 73816754 83660 + protein coding gene solute carrier family 12, member 7
D13Mit255 13 73761134 to 73761266 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 255
Cpgi5854 13 73763117 to 73764399 1282 CpG island CpG island 5854
Tssr120334 13 73763193 to 73763198 5 + TSS region transcription start site region 120334
Tssr123197 13 73763529 to 73763545 16 - TSS region transcription start site region 123197
Tssr120335 13 73763680 to 73763763 83 + TSS region transcription start site region 120335
Tssr120336 13 73770231 to 73770252 21 + TSS region transcription start site region 120336
Tssr120337 13 73772896 to 73772916 20 + TSS region transcription start site region 120337
D13Ertd261e 13 73802319 to 73802568 249 DNA segment DNA segment, Chr 13, ERATO Doi 261, expressed
Nkd2 13 73818534 to 73847631 29097 - protein coding gene naked cuticle 2
Tssr120338 13 73829895 to 73829902 7 + TSS region transcription start site region 120338
Gm8062 13 73829932 to 73830375 443 + pseudogene predicted pseudogene 8062
Cpgi5855 13 73846461 to 73848105 1644 CpG island CpG island 5855
Tssr123198 13 73847603 to 73847619 16 - TSS region transcription start site region 123198
Gm30303 13 73847727 to 73853107 5380 + lncRNA gene predicted gene, 30303
Gm30432 13 73858455 to 73860338 1883 + lncRNA gene predicted gene, 30432
Tssr4115 13 73870745 to 73870747 2 + TSS region transcription start site region 4115
Trip13 13 73912450 to 73937810 25360 - protein coding gene thyroid hormone receptor interactor 13
Gm25197 13 73924585 to 73924710 125 - miRNA gene predicted gene, 25197
Cpgi5856 13 73937102 to 73938229 1127 CpG island CpG island 5856
Tssr123199 13 73937655 to 73937715 60 - TSS region transcription start site region 123199
Tssr123200 13 73937719 to 73937744 25 - TSS region transcription start site region 123200
Tssr123201 13 73937761 to 73937787 26 - TSS region transcription start site region 123201
Tssr120339 13 73937784 to 73937795 11 + TSS region transcription start site region 120339
Tssr120340 13 73937799 to 73937880 81 + TSS region transcription start site region 120340
Brd9 13 73937811 to 73960895 23084 + protein coding gene bromodomain containing 9
Tssr120341 13 73938122 to 73938147 25 + TSS region transcription start site region 120341
Tssr120342 13 73956571 to 73956572 1 + TSS region transcription start site region 120342
Gm41002 13 73958941 to 73963733 4792 - antisense lncRNA gene predicted gene, 41002
Tssr123202 13 73963728 to 73963737 9 - TSS region transcription start site region 123202
Tssr120343 13 73963844 to 73963847 3 + TSS region transcription start site region 120343
Zdhhc11 13 73963847 to 73992985 29138 + protein coding gene zinc finger, DHHC domain containing 11
Tssr120344 13 73963853 to 73963888 35 + TSS region transcription start site region 120344
Gm10126 13 73988966 to 73989133 167 - pseudogene predicted gene 10126
Gm15912 13 74008009 to 74009354 1345 - unclassified non-coding RNA gene predicted gene 15912
D13Mit8.1 13 74008635 to 74008758 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 8.1
Cpgi5857 13 74008871 to 74010489 1618 CpG island CpG island 5857
Tssr123203 13 74009303 to 74009327 24 - TSS region transcription start site region 123203
Tssr123204 13 74009335 to 74009359 24 - TSS region transcription start site region 123204
Tppp 13 74009419 to 74035753 26334 + protein coding gene tubulin polymerization promoting protein
Tssr120345 13 74009430 to 74009453 23 + TSS region transcription start site region 120345
Tssr120346 13 74009460 to 74009483 23 + TSS region transcription start site region 120346
Gm6263 13 74018793 to 74020134 1341 - pseudogene predicted gene 6263
Tssr123205 13 74020202 to 74020206 4 - TSS region transcription start site region 123205
Cep72 13 74036500 to 74062299 25799 - protein coding gene centrosomal protein 72
Cpgi5858 13 74061959 to 74062557 598 CpG island CpG island 5858
Tssr123206 13 74062262 to 74062315 53 - TSS region transcription start site region 123206
Tssr120347 13 74062408 to 74062410 2 + TSS region transcription start site region 120347
0610040A22Rik 13 74120826 to 74121996 1170 unclassified gene RIKEN cDNA 0610040A22 gene
Cpgi5859 13 74121016 to 74121745 729 CpG island CpG island 5859
Tssr120348 13 74121405 to 74121421 16 + TSS region transcription start site region 120348
Tssr120349 13 74121435 to 74121446 11 + TSS region transcription start site region 120349
Slc9a3 13 74121457 to 74169442 47985 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 3
Gm41003 13 74122101 to 74131263 9162 + lncRNA gene predicted gene, 41003
Tssr120350 13 74122518 to 74122534 16 + TSS region transcription start site region 120350
Cpgi5860 13 74166816 to 74167188 372 CpG island CpG island 5860
Exoc3 13 74169802 to 74208729 38927 - protein coding gene exocyst complex component 3
Cpgi5861 13 74208336 to 74209238 902 CpG island CpG island 5861
Tssr123207 13 74208661 to 74208719 58 - TSS region transcription start site region 123207
Tssr120351 13 74208734 to 74208757 23 + TSS region transcription start site region 120351
Tssr120352 13 74208759 to 74208795 36 + TSS region transcription start site region 120352
Ahrr 13 74211118 to 74292331 81213 - protein coding gene aryl-hydrocarbon receptor repressor
Tssr123208 13 74220788 to 74220803 15 - TSS region transcription start site region 123208
Cpgi5862 13 74259720 to 74260385 665 CpG island CpG island 5862
Cpgi5863 13 74292143 to 74292587 444 CpG island CpG island 5863
Tssr123209 13 74292283 to 74292343 60 - TSS region transcription start site region 123209
Pdcd6 13 74303509 to 74317580 14071 - protein coding gene programmed cell death 6
Cpgi5864 13 74316878 to 74317737 859 CpG island CpG island 5864
Tssr123210 13 74317213 to 74317233 20 - TSS region transcription start site region 123210
Tssr123211 13 74317234 to 74317300 66 - TSS region transcription start site region 123211
Sdha 13 74322255 to 74350240 27985 - protein coding gene succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
Tssr123212 13 74333645 to 74333649 4 - TSS region transcription start site region 123212
Tssr123213 13 74337431 to 74337436 5 - TSS region transcription start site region 123213
Gm16125 13 74340539 to 74340877 338 + pseudogene predicted gene 16125
Tssr123214 13 74343384 to 74343404 20 - TSS region transcription start site region 123214
Cpgi5865 13 74349765 to 74350678 913 CpG island CpG island 5865
Tssr123215 13 74350206 to 74350247 41 - TSS region transcription start site region 123215
Tssr120353 13 74350299 to 74350308 9 + TSS region transcription start site region 120353
Tssr120354 13 74350313 to 74350369 56 + TSS region transcription start site region 120354
Ccdc127 13 74350317 to 74365783 15466 + protein coding gene coiled-coil domain containing 127
Lrrc14b 13 74359582 to 74364000 4418 - protein coding gene leucine rich repeat containing 14B
Tssr123216 13 74363920 to 74363927 7 - TSS region transcription start site region 123216
Tssr123217 13 74363937 to 74363948 11 - TSS region transcription start site region 123217
Tssr123218 13 74363971 to 74363986 15 - TSS region transcription start site region 123218