Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:71243713-72683729

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pregq3 13 20431342 to 72237070 51805728 QTL pregnancy QTL 3
rsl 13 56481436 to 72237021 15755585 heritable phenotypic marker regulator of sex limited protein-Slp
clf2 13 58806569 to 72634198 13827629 heritable phenotypic marker cleft lip 2
D13Mit313 13 71268348 to 71268469 121 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 313
Cpgi5823 13 71359328 to 71359489 161 CpG island CpG island 5823
Gm40998 13 71372533 to 71394296 21763 - lncRNA gene predicted gene, 40998
Tssr123162 13 71394290 to 71394299 9 - TSS region transcription start site region 123162
1700112M02Rik 13 71487613 to 71612710 125097 + lincRNA gene RIKEN cDNA 1700112M02 gene
Tssr120304 13 71487617 to 71487627 10 + TSS region transcription start site region 120304
D13Mit200.2 13 71538048 to 71538158 110 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 200.2
Gm47811 13 71624610 to 71624974 364 - pseudogene predicted gene, 47811
Gm47812 13 71625028 to 71625143 115 + pseudogene predicted gene, 47812
Gm40999 13 71729628 to 71785889 56261 - lncRNA gene predicted gene, 40999
D13Mit210 13 71760897 to 71761038 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 210
D13Gor1 13 71914419 to 71914882 463 DNA segment DNA segment, Chr 13, Gorin 1
Cpgi5824 13 71957259 to 71957608 349 CpG island CpG island 5824
Cpgi5825 13 71958064 to 71958721 657 CpG island CpG island 5825
Irx1 13 71958232 to 71963723 5491 - protein coding gene Iroquois homeobox 1
Cpgi5826 13 71959128 to 71960291 1163 CpG island CpG island 5826
Tssr123163 13 71960343 to 71960357 14 - TSS region transcription start site region 123163
Tssr123164 13 71960369 to 71960384 15 - TSS region transcription start site region 123164
Tssr123165 13 71961702 to 71961705 3 - TSS region transcription start site region 123165
Cpgi5827 13 71962693 to 71964354 1661 CpG island CpG island 5827
Tssr123166 13 71963693 to 71963710 17 - TSS region transcription start site region 123166
Tssr123167 13 71963713 to 71963729 16 - TSS region transcription start site region 123167
Tssr123168 13 71963730 to 71963755 25 - TSS region transcription start site region 123168
D13Mit41 13 72120378 to 72120550 172 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 41
D13Jpk2 13 72160796 to 72160989 193 DNA segment DNA segment, Chr 13, Japan, Kominami 2
Bmch6 13 72236861 to 72237021 160 QTL bone mechanical trait 6
D13Mit26 13 72236861 to 72237021 160 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 26
D13Mit24 13 72236865 to 72237070 205 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 24
Tssr123169 13 72263960 to 72263968 8 - TSS region transcription start site region 123169
Gm4052 13 72350221 to 72350671 450 + pseudogene predicted gene 4052
Cpgi5828 13 72366007 to 72366291 284 CpG island CpG island 5828
Gm47836 13 72367326 to 72371647 4321 - unclassified gene predicted gene, 47836
Rpl9-ps4 13 72454762 to 72455340 578 - pseudogene ribosomal protein L9, pseudogene 4
Gm47838 13 72467977 to 72471803 3826 + unclassified gene predicted gene, 47838
Gm4057 13 72472202 to 72472569 367 - pseudogene predicted gene 4057
Gm41000 13 72532484 to 72537564 5080 - lncRNA gene predicted gene, 41000
Gm38580 13 72542765 to 72601064 58299 - lncRNA gene predicted gene, 38580
D13Mit189 13 72556791 to 72556916 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 189
D13Mit48 13 72561859 to 72562003 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 48
Cpgi5829 13 72624018 to 72624494 476 CpG island CpG island 5829
Cpgi5830 13 72625248 to 72625484 236 CpG island CpG island 5830
Gm20554 13 72626213 to 72628564 2351 - lincRNA gene predicted gene, 20554
Cpgi5831 13 72627370 to 72629764 2394 CpG island CpG island 5831
Tssr123170 13 72628485 to 72628505 20 - TSS region transcription start site region 123170
Tssr123171 13 72628563 to 72628586 23 - TSS region transcription start site region 123171
Tssr123172 13 72628590 to 72628607 17 - TSS region transcription start site region 123172
Tssr120305 13 72628786 to 72628795 9 + TSS region transcription start site region 120305
Tssr120306 13 72628802 to 72628825 23 + TSS region transcription start site region 120306
Irx2 13 72628820 to 72634198 5378 + protein coding gene Iroquois homeobox 2
Tssr120307 13 72628831 to 72628848 17 + TSS region transcription start site region 120307
Cpgi5832 13 72630464 to 72632073 1609 CpG island CpG island 5832
Tssr120308 13 72632614 to 72632625 11 + TSS region transcription start site region 120308
Cpgi5833 13 72638430 to 72638716 286 CpG island CpG island 5833
Cpgi5834 13 72639544 to 72640089 545 CpG island CpG island 5834
Gm41001 13 72669467 to 72676554 7087 + lncRNA gene predicted gene, 41001