Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:69822802-71746811

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr123150 13 69933245 to 69933255 10 - TSS region transcription start site region 123150
Tssr123151 13 69933258 to 69933267 9 - TSS region transcription start site region 123151
Tssr164706 13 69950343 to 69950344 1 - TSS region transcription start site region 164706
Tssr120288 13 69957986 to 69958001 15 + TSS region transcription start site region 120288
Tssr120289 13 69959829 to 69959836 7 + TSS region transcription start site region 120289
4933416O17Rik 13 69959833 to 69963437 3604 + lincRNA gene RIKEN cDNA 4933416O17 gene
Tssr120290 13 69959869 to 69959870 1 + TSS region transcription start site region 120290
Tssr120291 13 69959874 to 69959881 7 + TSS region transcription start site region 120291
Tssr120292 13 69959884 to 69959903 19 + TSS region transcription start site region 120292
Gm36019 13 69983596 to 69996461 12865 + lncRNA gene predicted gene, 36019
Cpgi5817 13 69991790 to 69992035 245 CpG island CpG island 5817
1700084F23Rik 13 70004050 to 70028348 24298 - lincRNA gene RIKEN cDNA 1700084F23 gene
Gm47655 13 70007231 to 70007614 383 - pseudogene predicted gene, 47655
Cpgi5818 13 70007685 to 70007850 165 CpG island CpG island 5818
Gm3772 13 70021959 to 70119949 97990 + lincRNA gene predicted gene 3772
Tssr123152 13 70028342 to 70028356 14 - TSS region transcription start site region 123152
Tssr120293 13 70028356 to 70028362 6 + TSS region transcription start site region 120293
Gm47656 13 70061558 to 70063922 2364 + unclassified gene predicted gene, 47656
AU017674 13 70149800 to 70205972 56172 + lincRNA gene expressed sequence AU017674
Gm26018 13 70168832 to 70168959 127 + snoRNA gene predicted gene, 26018
4930520P13Rik 13 70232822 to 70248122 15300 + lincRNA gene RIKEN cDNA 4930520P13 gene
Cpgi5819 13 70234482 to 70234639 157 CpG island CpG island 5819
Gm36216 13 70278705 to 70290082 11377 + lncRNA gene predicted gene, 36216
Tssr120294 13 70292933 to 70292938 5 + TSS region transcription start site region 120294
D13Mit187 13 70328144 to 70328271 127 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 187
Gm47706 13 70422491 to 70422781 290 - pseudogene predicted gene, 47706
Tssr4112 13 70535500 to 70535503 3 + TSS region transcription start site region 4112
Gm36267 13 70550859 to 70574289 23430 - lncRNA gene predicted gene, 36267
Tssr123153 13 70573149 to 70573159 10 - TSS region transcription start site region 123153
Tssr120295 13 70573230 to 70573243 13 + TSS region transcription start site region 120295
1700100L14Rik 13 70573241 to 70576104 2863 + antisense lncRNA gene RIKEN cDNA 1700100L14 gene
Tssr120296 13 70574431 to 70574472 41 + TSS region transcription start site region 120296
Tssr120297 13 70574477 to 70574495 18 + TSS region transcription start site region 120297
Tssr120298 13 70574504 to 70574515 11 + TSS region transcription start site region 120298
Ice1 13 70588689 to 70637840 49151 - protein coding gene interactor of little elongation complex ELL subunit 1
Gm40996 13 70610786 to 70614925 4139 - lncRNA gene predicted gene, 40996
Cpgi5820 13 70637189 to 70638303 1114 CpG island CpG island 5820
Tssr123154 13 70637740 to 70637745 5 - TSS region transcription start site region 123154
Tssr123155 13 70637769 to 70637825 56 - TSS region transcription start site region 123155
D13Ertd570e 13 70649596 to 70649818 222 DNA segment DNA segment, Chr 13, ERATO Doi 570, expressed
Tssr120299 13 70650141 to 70650149 8 + TSS region transcription start site region 120299
D030007L05Rik 13 70650144 to 70655979 5835 + lincRNA gene RIKEN cDNA D030007L05 gene
Tssr120300 13 70650182 to 70650219 37 + TSS region transcription start site region 120300
Gm36377 13 70651005 to 70655787 4782 - lincRNA gene predicted gene, 36377
Pgct1 13 70672664 to 70672778 114 QTL primordial germ cell tumor locus 1
D13Mit188 13 70672664 to 70672778 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 188
Gm36474 13 70673122 to 70679943 6821 + lncRNA gene predicted gene, 36474
Gm36426 13 70676716 to 70681966 5250 - lincRNA gene predicted gene, 36426
Gm36607 13 70706233 to 70733207 26974 + antisense lncRNA gene predicted gene, 36607
Adamts16 13 70727802 to 70841811 114009 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16
Tssr123156 13 70750082 to 70750085 3 - TSS region transcription start site region 123156
Tssr123157 13 70827443 to 70827448 5 - TSS region transcription start site region 123157
Gm36529 13 70840451 to 70859609 19158 + antisense lncRNA gene predicted gene, 36529
Cpgi5821 13 70841237 to 70841840 603 CpG island CpG island 5821
Tssr123158 13 70841703 to 70841716 13 - TSS region transcription start site region 123158
Tssr123159 13 70841729 to 70841754 25 - TSS region transcription start site region 123159
Tssr123160 13 70841762 to 70841783 21 - TSS region transcription start site region 123160
Tssr123161 13 70841790 to 70841810 20 - TSS region transcription start site region 123161
Tssr120301 13 70872401 to 70872404 3 + TSS region transcription start site region 120301
8030423J24Rik 13 70882948 to 70884503 1555 + protein coding gene RIKEN cDNA 8030423J24 gene
Gm36734 13 71018326 to 71020421 2095 - lncRNA gene predicted gene, 36734
D13Mit280 13 71032978 to 71033093 115 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 280
Gm38191 13 71068480 to 71071726 3246 - unclassified gene predicted gene, 38191
Gm36785 13 71069601 to 71076179 6578 + lncRNA gene predicted gene, 36785
Gm40997 13 71079422 to 71106427 27005 - lncRNA gene predicted gene, 40997
Tssr120302 13 71104562 to 71104569 7 + TSS region transcription start site region 120302
Tssr120303 13 71104800 to 71104807 7 + TSS region transcription start site region 120303
Cpgi5822 13 71105272 to 71105439 167 CpG island CpG island 5822
Tssr4113 13 71106436 to 71106486 50 - TSS region transcription start site region 4113
Mir466f-4 13 71107089 to 71107209 120 + miRNA gene microRNA 466f-4
D13Mit313 13 71268348 to 71268469 121 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 313
Cpgi5823 13 71359328 to 71359489 161 CpG island CpG island 5823
Gm40998 13 71372533 to 71394296 21763 - lncRNA gene predicted gene, 40998
Tssr123162 13 71394290 to 71394299 9 - TSS region transcription start site region 123162
1700112M02Rik 13 71487613 to 71612710 125097 + lincRNA gene RIKEN cDNA 1700112M02 gene
Tssr120304 13 71487617 to 71487627 10 + TSS region transcription start site region 120304
D13Mit200.2 13 71538048 to 71538158 110 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 200.2
Gm47811 13 71624610 to 71624974 364 - pseudogene predicted gene, 47811
Gm47812 13 71625028 to 71625143 115 + pseudogene predicted gene, 47812
Gm40999 13 71729628 to 71785889 56261 - lncRNA gene predicted gene, 40999