Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:69497344-70107360

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tent4a 13 69497952 to 69534236 36284 - protein coding gene terminal nucleotidyltransferase 4A
Gm48676 13 69514000 to 69514176 176 + pseudogene predicted gene, 48676
Cpgi5812 13 69533112 to 69535641 2529 CpG island CpG island 5812
Tssr123129 13 69534112 to 69534139 27 - TSS region transcription start site region 123129
Tssr123130 13 69534141 to 69534156 15 - TSS region transcription start site region 123130
Tssr123131 13 69534165 to 69534191 26 - TSS region transcription start site region 123131
Tssr123132 13 69534348 to 69534395 47 - TSS region transcription start site region 123132
Tssr123133 13 69534421 to 69534467 46 - TSS region transcription start site region 123133
Tssr4110 13 69534549 to 69534567 18 - TSS region transcription start site region 4110
A930018O16Rik 13 69534549 to 69535451 902 + protein coding gene RIKEN cDNA A930018O16 gene
Tssr123134 13 69534577 to 69534616 39 - TSS region transcription start site region 123134
A530095I07Rik 13 69543394 to 69544074 680 - antisense lncRNA gene RIKEN cDNA A530095I07 gene
Gm40992 13 69548557 to 69553730 5173 - lncRNA gene predicted gene, 40992
Gm18882 13 69548956 to 69549762 806 + pseudogene predicted gene, 18882
Srd5a1 13 69573449 to 69611442 37993 - protein coding gene steroid 5 alpha-reductase 1
Tssr123135 13 69594970 to 69594977 7 - TSS region transcription start site region 123135
Tssr123136 13 69594995 to 69595006 11 - TSS region transcription start site region 123136
Gm17108 13 69610498 to 69614901 4403 - sense overlapping lncRNA gene predicted gene 17108
Cpgi5813 13 69610660 to 69612602 1942 CpG island CpG island 5813
Tssr123137 13 69611264 to 69611279 15 - TSS region transcription start site region 123137
Tssr123138 13 69611291 to 69611312 21 - TSS region transcription start site region 123138
Tssr123139 13 69611314 to 69611333 19 - TSS region transcription start site region 123139
Tssr123140 13 69611349 to 69611362 13 - TSS region transcription start site region 123140
Tssr123141 13 69611421 to 69611446 25 - TSS region transcription start site region 123141
Tssr123142 13 69611450 to 69611477 27 - TSS region transcription start site region 123142
Tssr120275 13 69611532 to 69611543 11 + TSS region transcription start site region 120275
Tssr4111 13 69611560 to 69611571 11 + TSS region transcription start site region 4111
Tssr120276 13 69612009 to 69612067 58 + TSS region transcription start site region 120276
Nsun2 13 69612016 to 69635780 23764 + protein coding gene NOL1/NOP2/Sun domain family member 2
Tssr120277 13 69612068 to 69612083 15 + TSS region transcription start site region 120277
Tssr120278 13 69612226 to 69612260 34 + TSS region transcription start site region 120278
Tssr120279 13 69612264 to 69612276 12 + TSS region transcription start site region 120279
Tssr120280 13 69617426 to 69617445 19 + TSS region transcription start site region 120280
Gm17872 13 69654775 to 69655512 737 - pseudogene predicted gene, 17872
Gm48816 13 69662055 to 69662420 365 + pseudogene predicted gene, 48816
Gm48817 13 69664483 to 69665833 1350 - pseudogene predicted gene, 48817
Gm18313 13 69667184 to 69668923 1739 - pseudogene predicted gene, 18313
Gm35618 13 69680589 to 69697676 17087 - lincRNA gene predicted gene, 35618
Gm40994 13 69681550 to 69687492 5942 + lncRNA gene predicted gene, 40994
Gm40993 13 69688078 to 69695153 7075 + lncRNA gene predicted gene, 40993
Gm48819 13 69697811 to 69700895 3084 + lincRNA gene predicted gene, 48819
Ube2ql1 13 69702832 to 69739889 37057 - protein coding gene ubiquitin-conjugating enzyme E2Q family-like 1
Cpgi5814 13 69737945 to 69741024 3079 CpG island CpG island 5814
Tssr123143 13 69738928 to 69738951 23 - TSS region transcription start site region 123143
Tssr123144 13 69738956 to 69738973 17 - TSS region transcription start site region 123144
Tssr123145 13 69738981 to 69738990 9 - TSS region transcription start site region 123145
Tssr123146 13 69739418 to 69739437 19 - TSS region transcription start site region 123146
Tssr123147 13 69739845 to 69739889 44 - TSS region transcription start site region 123147
4930547H16Rik 13 69771890 to 69772714 824 - lincRNA gene RIKEN cDNA 4930547H16 gene
Tssr123148 13 69772606 to 69772618 12 - TSS region transcription start site region 123148
Tssr123149 13 69772623 to 69772636 13 - TSS region transcription start site region 123149
Tssr120281 13 69772776 to 69772784 8 + TSS region transcription start site region 120281
Gm20288 13 69775436 to 69775615 179 + pseudogene predicted gene, 20288
Cpgi5815 13 69778202 to 69778408 206 CpG island CpG island 5815
Tssr120282 13 69802344 to 69802360 16 + TSS region transcription start site region 120282
1700025O18Rik 13 69802346 to 69808824 6478 unclassified non-coding RNA gene RIKEN cDNA 1700025O18 gene
Tssr120283 13 69802362 to 69802388 26 + TSS region transcription start site region 120283
Tssr120284 13 69802390 to 69802405 15 + TSS region transcription start site region 120284
Med10 13 69802395 to 69816104 13709 + protein coding gene mediator complex subunit 10
Cpgi5816 13 69809785 to 69810538 753 CpG island CpG island 5816
Tssr120285 13 69809848 to 69809859 11 + TSS region transcription start site region 120285
Tssr120286 13 69809863 to 69809899 36 + TSS region transcription start site region 120286
Gm26819 13 69809914 to 69816094 6180 - lincRNA gene predicted gene, 26819
Tssr120287 13 69810159 to 69810172 13 + TSS region transcription start site region 120287
Tssr123150 13 69933245 to 69933255 10 - TSS region transcription start site region 123150
Tssr123151 13 69933258 to 69933267 9 - TSS region transcription start site region 123151
Tssr164706 13 69950343 to 69950344 1 - TSS region transcription start site region 164706
Tssr120288 13 69957986 to 69958001 15 + TSS region transcription start site region 120288
Tssr120289 13 69959829 to 69959836 7 + TSS region transcription start site region 120289
4933416O17Rik 13 69959833 to 69963437 3604 + lincRNA gene RIKEN cDNA 4933416O17 gene
Tssr120290 13 69959869 to 69959870 1 + TSS region transcription start site region 120290
Tssr120291 13 69959874 to 69959881 7 + TSS region transcription start site region 120291
Tssr120292 13 69959884 to 69959903 19 + TSS region transcription start site region 120292
Gm36019 13 69983596 to 69996461 12865 + lncRNA gene predicted gene, 36019
Cpgi5817 13 69991790 to 69992035 245 CpG island CpG island 5817
1700084F23Rik 13 70004050 to 70028348 24298 - lincRNA gene RIKEN cDNA 1700084F23 gene
Gm47655 13 70007231 to 70007614 383 - pseudogene predicted gene, 47655
Cpgi5818 13 70007685 to 70007850 165 CpG island CpG island 5818
Gm3772 13 70021959 to 70119949 97990 + lincRNA gene predicted gene 3772
Tssr123152 13 70028342 to 70028356 14 - TSS region transcription start site region 123152
Tssr120293 13 70028356 to 70028362 6 + TSS region transcription start site region 120293
Gm47656 13 70061558 to 70063922 2364 + unclassified gene predicted gene, 47656