Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:69484422-72701427

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pregq3 13 20431342 to 72237070 51805728 QTL pregnancy QTL 3
rsl 13 56481436 to 72237021 15755585 heritable phenotypic marker regulator of sex limited protein-Slp
clf2 13 58806569 to 72634198 13827629 heritable phenotypic marker cleft lip 2
Cpgi5811 13 69490259 to 69490567 308 CpG island CpG island 5811
Tent4a 13 69497952 to 69534236 36284 - protein coding gene terminal nucleotidyltransferase 4A
Gm48676 13 69514000 to 69514176 176 + pseudogene predicted gene, 48676
Cpgi5812 13 69533112 to 69535641 2529 CpG island CpG island 5812
Tssr123129 13 69534112 to 69534139 27 - TSS region transcription start site region 123129
Tssr123130 13 69534141 to 69534156 15 - TSS region transcription start site region 123130
Tssr123131 13 69534165 to 69534191 26 - TSS region transcription start site region 123131
Tssr123132 13 69534348 to 69534395 47 - TSS region transcription start site region 123132
Tssr123133 13 69534421 to 69534467 46 - TSS region transcription start site region 123133
A930018O16Rik 13 69534549 to 69535451 902 + protein coding gene RIKEN cDNA A930018O16 gene
Tssr4110 13 69534549 to 69534567 18 - TSS region transcription start site region 4110
Tssr123134 13 69534577 to 69534616 39 - TSS region transcription start site region 123134
A530095I07Rik 13 69543394 to 69544074 680 - antisense lncRNA gene RIKEN cDNA A530095I07 gene
Gm40992 13 69548557 to 69553730 5173 - lncRNA gene predicted gene, 40992
Gm18882 13 69548956 to 69549762 806 + pseudogene predicted gene, 18882
Srd5a1 13 69573449 to 69611442 37993 - protein coding gene steroid 5 alpha-reductase 1
Tssr123135 13 69594970 to 69594977 7 - TSS region transcription start site region 123135
Tssr123136 13 69594995 to 69595006 11 - TSS region transcription start site region 123136
Gm17108 13 69610498 to 69614901 4403 - sense overlapping lncRNA gene predicted gene 17108
Cpgi5813 13 69610660 to 69612602 1942 CpG island CpG island 5813
Tssr123137 13 69611264 to 69611279 15 - TSS region transcription start site region 123137
Tssr123138 13 69611291 to 69611312 21 - TSS region transcription start site region 123138
Tssr123139 13 69611314 to 69611333 19 - TSS region transcription start site region 123139
Tssr123140 13 69611349 to 69611362 13 - TSS region transcription start site region 123140
Tssr123141 13 69611421 to 69611446 25 - TSS region transcription start site region 123141
Tssr123142 13 69611450 to 69611477 27 - TSS region transcription start site region 123142
Tssr120275 13 69611532 to 69611543 11 + TSS region transcription start site region 120275
Tssr4111 13 69611560 to 69611571 11 + TSS region transcription start site region 4111
Tssr120276 13 69612009 to 69612067 58 + TSS region transcription start site region 120276
Nsun2 13 69612016 to 69635780 23764 + protein coding gene NOL1/NOP2/Sun domain family member 2
Tssr120277 13 69612068 to 69612083 15 + TSS region transcription start site region 120277
Tssr120278 13 69612226 to 69612260 34 + TSS region transcription start site region 120278
Tssr120279 13 69612264 to 69612276 12 + TSS region transcription start site region 120279
Tssr120280 13 69617426 to 69617445 19 + TSS region transcription start site region 120280
Gm17872 13 69654775 to 69655512 737 - pseudogene predicted gene, 17872
Gm48816 13 69662055 to 69662420 365 + pseudogene predicted gene, 48816
Gm48817 13 69664483 to 69665833 1350 - pseudogene predicted gene, 48817
Gm18313 13 69667184 to 69668923 1739 - pseudogene predicted gene, 18313
Gm35618 13 69680589 to 69697676 17087 - lincRNA gene predicted gene, 35618
Gm40994 13 69681550 to 69687492 5942 + lncRNA gene predicted gene, 40994
Gm40993 13 69688078 to 69695153 7075 + lncRNA gene predicted gene, 40993
Gm48819 13 69697811 to 69700895 3084 + lincRNA gene predicted gene, 48819
Ube2ql1 13 69702832 to 69739889 37057 - protein coding gene ubiquitin-conjugating enzyme E2Q family-like 1
Cpgi5814 13 69737945 to 69741024 3079 CpG island CpG island 5814
Tssr123143 13 69738928 to 69738951 23 - TSS region transcription start site region 123143
Tssr123144 13 69738956 to 69738973 17 - TSS region transcription start site region 123144
Tssr123145 13 69738981 to 69738990 9 - TSS region transcription start site region 123145
Tssr123146 13 69739418 to 69739437 19 - TSS region transcription start site region 123146
Tssr123147 13 69739845 to 69739889 44 - TSS region transcription start site region 123147
4930547H16Rik 13 69771890 to 69772714 824 - lincRNA gene RIKEN cDNA 4930547H16 gene
Tssr123148 13 69772606 to 69772618 12 - TSS region transcription start site region 123148
Tssr123149 13 69772623 to 69772636 13 - TSS region transcription start site region 123149
Tssr120281 13 69772776 to 69772784 8 + TSS region transcription start site region 120281
Gm20288 13 69775436 to 69775615 179 + pseudogene predicted gene, 20288
Cpgi5815 13 69778202 to 69778408 206 CpG island CpG island 5815
Tssr120282 13 69802344 to 69802360 16 + TSS region transcription start site region 120282
1700025O18Rik 13 69802346 to 69808824 6478 unclassified non-coding RNA gene RIKEN cDNA 1700025O18 gene
Tssr120283 13 69802362 to 69802388 26 + TSS region transcription start site region 120283
Tssr120284 13 69802390 to 69802405 15 + TSS region transcription start site region 120284
Med10 13 69802395 to 69816104 13709 + protein coding gene mediator complex subunit 10
Cpgi5816 13 69809785 to 69810538 753 CpG island CpG island 5816
Tssr120285 13 69809848 to 69809859 11 + TSS region transcription start site region 120285
Tssr120286 13 69809863 to 69809899 36 + TSS region transcription start site region 120286
Gm26819 13 69809914 to 69816094 6180 - lincRNA gene predicted gene, 26819
Tssr120287 13 69810159 to 69810172 13 + TSS region transcription start site region 120287
Tssr123150 13 69933245 to 69933255 10 - TSS region transcription start site region 123150
Tssr123151 13 69933258 to 69933267 9 - TSS region transcription start site region 123151
Tssr164706 13 69950343 to 69950344 1 - TSS region transcription start site region 164706
Tssr120288 13 69957986 to 69958001 15 + TSS region transcription start site region 120288
Tssr120289 13 69959829 to 69959836 7 + TSS region transcription start site region 120289
4933416O17Rik 13 69959833 to 69963437 3604 + lincRNA gene RIKEN cDNA 4933416O17 gene
Tssr120290 13 69959869 to 69959870 1 + TSS region transcription start site region 120290
Tssr120291 13 69959874 to 69959881 7 + TSS region transcription start site region 120291
Tssr120292 13 69959884 to 69959903 19 + TSS region transcription start site region 120292
Gm36019 13 69983596 to 69996461 12865 + lncRNA gene predicted gene, 36019
Cpgi5817 13 69991790 to 69992035 245 CpG island CpG island 5817
1700084F23Rik 13 70004050 to 70028348 24298 - lincRNA gene RIKEN cDNA 1700084F23 gene
Gm47655 13 70007231 to 70007614 383 - pseudogene predicted gene, 47655
Cpgi5818 13 70007685 to 70007850 165 CpG island CpG island 5818
Gm3772 13 70021959 to 70119949 97990 + lincRNA gene predicted gene 3772
Tssr123152 13 70028342 to 70028356 14 - TSS region transcription start site region 123152
Tssr120293 13 70028356 to 70028362 6 + TSS region transcription start site region 120293
Gm47656 13 70061558 to 70063922 2364 + unclassified gene predicted gene, 47656
AU017674 13 70149800 to 70205972 56172 + lincRNA gene expressed sequence AU017674
Gm26018 13 70168832 to 70168959 127 + snoRNA gene predicted gene, 26018
4930520P13Rik 13 70232822 to 70248122 15300 + lincRNA gene RIKEN cDNA 4930520P13 gene
Cpgi5819 13 70234482 to 70234639 157 CpG island CpG island 5819
Gm36216 13 70278705 to 70290082 11377 + lncRNA gene predicted gene, 36216
Tssr120294 13 70292933 to 70292938 5 + TSS region transcription start site region 120294
D13Mit187 13 70328144 to 70328271 127 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 187
Gm47706 13 70422491 to 70422781 290 - pseudogene predicted gene, 47706
Tssr4112 13 70535500 to 70535503 3 + TSS region transcription start site region 4112
Gm36267 13 70550859 to 70574289 23430 - lncRNA gene predicted gene, 36267
Tssr123153 13 70573149 to 70573159 10 - TSS region transcription start site region 123153
Tssr120295 13 70573230 to 70573243 13 + TSS region transcription start site region 120295
1700100L14Rik 13 70573241 to 70576104 2863 + antisense lncRNA gene RIKEN cDNA 1700100L14 gene
Tssr120296 13 70574431 to 70574472 41 + TSS region transcription start site region 120296
Tssr120297 13 70574477 to 70574495 18 + TSS region transcription start site region 120297
Tssr120298 13 70574504 to 70574515 11 + TSS region transcription start site region 120298
Ice1 13 70588689 to 70637840 49151 - protein coding gene interactor of little elongation complex ELL subunit 1
Gm40996 13 70610786 to 70614925 4139 - lncRNA gene predicted gene, 40996
Cpgi5820 13 70637189 to 70638303 1114 CpG island CpG island 5820
Tssr123154 13 70637740 to 70637745 5 - TSS region transcription start site region 123154
Tssr123155 13 70637769 to 70637825 56 - TSS region transcription start site region 123155
D13Ertd570e 13 70649596 to 70649818 222 DNA segment DNA segment, Chr 13, ERATO Doi 570, expressed
Tssr120299 13 70650141 to 70650149 8 + TSS region transcription start site region 120299
D030007L05Rik 13 70650144 to 70655979 5835 + lincRNA gene RIKEN cDNA D030007L05 gene
Tssr120300 13 70650182 to 70650219 37 + TSS region transcription start site region 120300
Gm36377 13 70651005 to 70655787 4782 - lincRNA gene predicted gene, 36377
D13Mit188 13 70672664 to 70672778 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 188
Pgct1 13 70672664 to 70672778 114 QTL primordial germ cell tumor locus 1
Gm36474 13 70673122 to 70679943 6821 + lncRNA gene predicted gene, 36474
Gm36426 13 70676716 to 70681966 5250 - lincRNA gene predicted gene, 36426
Gm36607 13 70706233 to 70733207 26974 + antisense lncRNA gene predicted gene, 36607
Adamts16 13 70727802 to 70841811 114009 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16
Tssr123156 13 70750082 to 70750085 3 - TSS region transcription start site region 123156
Tssr123157 13 70827443 to 70827448 5 - TSS region transcription start site region 123157
Gm36529 13 70840451 to 70859609 19158 + antisense lncRNA gene predicted gene, 36529
Cpgi5821 13 70841237 to 70841840 603 CpG island CpG island 5821
Tssr123158 13 70841703 to 70841716 13 - TSS region transcription start site region 123158
Tssr123159 13 70841729 to 70841754 25 - TSS region transcription start site region 123159
Tssr123160 13 70841762 to 70841783 21 - TSS region transcription start site region 123160
Tssr123161 13 70841790 to 70841810 20 - TSS region transcription start site region 123161
Tssr120301 13 70872401 to 70872404 3 + TSS region transcription start site region 120301
8030423J24Rik 13 70882948 to 70884503 1555 + protein coding gene RIKEN cDNA 8030423J24 gene
Gm36734 13 71018326 to 71020421 2095 - lncRNA gene predicted gene, 36734
D13Mit280 13 71032978 to 71033093 115 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 280
Gm38191 13 71068480 to 71071726 3246 - unclassified gene predicted gene, 38191
Gm36785 13 71069601 to 71076179 6578 + lncRNA gene predicted gene, 36785
Gm40997 13 71079422 to 71106427 27005 - lncRNA gene predicted gene, 40997
Tssr120302 13 71104562 to 71104569 7 + TSS region transcription start site region 120302
Tssr120303 13 71104800 to 71104807 7 + TSS region transcription start site region 120303
Cpgi5822 13 71105272 to 71105439 167 CpG island CpG island 5822
Tssr4113 13 71106436 to 71106486 50 - TSS region transcription start site region 4113
Mir466f-4 13 71107089 to 71107209 120 + miRNA gene microRNA 466f-4
D13Mit313 13 71268348 to 71268469 121 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 313
Cpgi5823 13 71359328 to 71359489 161 CpG island CpG island 5823
Gm40998 13 71372533 to 71394296 21763 - lncRNA gene predicted gene, 40998
Tssr123162 13 71394290 to 71394299 9 - TSS region transcription start site region 123162
1700112M02Rik 13 71487613 to 71612710 125097 + lincRNA gene RIKEN cDNA 1700112M02 gene
Tssr120304 13 71487617 to 71487627 10 + TSS region transcription start site region 120304
D13Mit200.2 13 71538048 to 71538158 110 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 200.2
Gm47811 13 71624610 to 71624974 364 - pseudogene predicted gene, 47811
Gm47812 13 71625028 to 71625143 115 + pseudogene predicted gene, 47812
Gm40999 13 71729628 to 71785889 56261 - lncRNA gene predicted gene, 40999
D13Mit210 13 71760897 to 71761038 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 210
D13Gor1 13 71914419 to 71914882 463 DNA segment DNA segment, Chr 13, Gorin 1
Cpgi5824 13 71957259 to 71957608 349 CpG island CpG island 5824
Cpgi5825 13 71958064 to 71958721 657 CpG island CpG island 5825
Irx1 13 71958232 to 71963723 5491 - protein coding gene Iroquois homeobox 1
Cpgi5826 13 71959128 to 71960291 1163 CpG island CpG island 5826
Tssr123163 13 71960343 to 71960357 14 - TSS region transcription start site region 123163
Tssr123164 13 71960369 to 71960384 15 - TSS region transcription start site region 123164
Tssr123165 13 71961702 to 71961705 3 - TSS region transcription start site region 123165
Cpgi5827 13 71962693 to 71964354 1661 CpG island CpG island 5827
Tssr123166 13 71963693 to 71963710 17 - TSS region transcription start site region 123166
Tssr123167 13 71963713 to 71963729 16 - TSS region transcription start site region 123167
Tssr123168 13 71963730 to 71963755 25 - TSS region transcription start site region 123168
D13Mit41 13 72120378 to 72120550 172 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 41
D13Jpk2 13 72160796 to 72160989 193 DNA segment DNA segment, Chr 13, Japan, Kominami 2
D13Mit26 13 72236861 to 72237021 160 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 26
Bmch6 13 72236861 to 72237021 160 QTL bone mechanical trait 6
D13Mit24 13 72236865 to 72237070 205 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 24
Tssr123169 13 72263960 to 72263968 8 - TSS region transcription start site region 123169
Gm4052 13 72350221 to 72350671 450 + pseudogene predicted gene 4052
Cpgi5828 13 72366007 to 72366291 284 CpG island CpG island 5828
Gm47836 13 72367326 to 72371647 4321 - unclassified gene predicted gene, 47836
Rpl9-ps4 13 72454762 to 72455340 578 - pseudogene ribosomal protein L9, pseudogene 4
Gm47838 13 72467977 to 72471803 3826 + unclassified gene predicted gene, 47838
Gm4057 13 72472202 to 72472569 367 - pseudogene predicted gene 4057
Gm41000 13 72532484 to 72537564 5080 - lncRNA gene predicted gene, 41000
Gm38580 13 72542765 to 72601064 58299 - lncRNA gene predicted gene, 38580
D13Mit189 13 72556791 to 72556916 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 189
D13Mit48 13 72561859 to 72562003 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 48
Cpgi5829 13 72624018 to 72624494 476 CpG island CpG island 5829
Cpgi5830 13 72625248 to 72625484 236 CpG island CpG island 5830
Gm20554 13 72626213 to 72628564 2351 - lincRNA gene predicted gene, 20554
Cpgi5831 13 72627370 to 72629764 2394 CpG island CpG island 5831
Tssr123170 13 72628485 to 72628505 20 - TSS region transcription start site region 123170
Tssr123171 13 72628563 to 72628586 23 - TSS region transcription start site region 123171
Tssr123172 13 72628590 to 72628607 17 - TSS region transcription start site region 123172
Tssr120305 13 72628786 to 72628795 9 + TSS region transcription start site region 120305
Tssr120306 13 72628802 to 72628825 23 + TSS region transcription start site region 120306
Irx2 13 72628820 to 72634198 5378 + protein coding gene Iroquois homeobox 2
Tssr120307 13 72628831 to 72628848 17 + TSS region transcription start site region 120307
Cpgi5832 13 72630464 to 72632073 1609 CpG island CpG island 5832
Tssr120308 13 72632614 to 72632625 11 + TSS region transcription start site region 120308
Cpgi5833 13 72638430 to 72638716 286 CpG island CpG island 5833
Cpgi5834 13 72639544 to 72640089 545 CpG island CpG island 5834
Gm41001 13 72669467 to 72676554 7087 + lncRNA gene predicted gene, 41001