Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:66389775-72920512

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440 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pregq3 13 20431342 to 72237070 51805728 QTL pregnancy QTL 3
rsl 13 56481436 to 72237021 15755585 heritable phenotypic marker regulator of sex limited protein-Slp
clf2 13 58806569 to 72634198 13827629 heritable phenotypic marker cleft lip 2
Gm26754 13 66244270 to 66451277 207007 + lincRNA gene predicted gene, 26754
Gm48247 13 66393128 to 66393323 195 - pseudogene predicted gene, 48247
Gm48244 13 66396552 to 66397532 980 - pseudogene predicted gene, 48244
Gm19119 13 66398531 to 66399255 724 + pseudogene predicted gene, 19119
Gm48243 13 66412482 to 66412857 375 + pseudogene predicted gene, 48243
2410141K09Rik 13 66418114 to 66441118 23004 - protein coding gene RIKEN cDNA 2410141K09 gene
Tssr123082 13 66441125 to 66441146 21 - TSS region transcription start site region 123082
Tssr120236 13 66441276 to 66441288 12 + TSS region transcription start site region 120236
Gm48322 13 66454648 to 66455354 706 - pseudogene predicted gene, 48322
Tssr120237 13 66488195 to 66488235 40 + TSS region transcription start site region 120237
Gm48323 13 66490947 to 66491147 200 + pseudogene predicted gene, 48323
Gm26806 13 66503160 to 66519887 16727 - lincRNA gene predicted gene, 26806
Vmn2r-ps105 13 66512152 to 66515159 3007 + pseudogene vomeronasal 2, receptor, pseudogene 105
Gm46428 13 66519349 to 66526631 7282 + lncRNA gene predicted gene, 46428
Gm46427 13 66527953 to 66529383 1430 + protein coding gene predicted gene, 46427
Gm48351 13 66534025 to 66534222 197 + pseudogene predicted gene, 48351
Gm48360 13 66549713 to 66551220 1507 - pseudogene predicted gene, 48360
Tssr120238 13 66563898 to 66563916 18 + TSS region transcription start site region 120238
Gm19117 13 66565936 to 66592059 26123 - pseudogene predicted gene, 19117
Gm49531 13 66565945 to 66566038 93 - pseudogene predicted gene, 49531
Gm10769 13 66574447 to 66575296 849 + pseudogene predicted pseudogene 10769
Gm27501 13 66586810 to 66586916 106 - miRNA gene predicted gene, 27501
Gm45966 13 66589169 to 66598733 9564 + protein coding gene predicted gene, 45966
Tssr120239 13 66589173 to 66589180 7 + TSS region transcription start site region 120239
Gm49532 13 66591913 to 66592013 100 - pseudogene predicted gene, 49532
Gm48361 13 66621686 to 66622905 1219 - pseudogene predicted gene, 48361
Gm46429 13 66633005 to 66634986 1981 + lncRNA gene predicted gene, 46429
Gm18412 13 66668920 to 66669864 944 - pseudogene predicted gene, 18412
Zfp640 13 66668946 to 66680803 11857 - pseudogene zinc finger protein 640
Vmn2r-ps106 13 66682839 to 66688352 5513 - pseudogene vomeronasal 2, receptor, pseudogene 106
Gm40988 13 66695345 to 66711165 15820 + lincRNA gene predicted gene, 40988
Tssr123083 13 66698263 to 66698279 16 - TSS region transcription start site region 123083
Gm40989 13 66738371 to 66741313 2942 - lncRNA gene predicted gene, 40989
Gm48404 13 66756334 to 66756486 152 - pseudogene predicted gene, 48404
Gm48412 13 66777441 to 66779142 1701 + lincRNA gene predicted gene, 48412
Gm7896 13 66792583 to 66802563 9980 - protein coding gene predicted gene 7869
Gm48413 13 66799297 to 66799390 93 + pseudogene predicted gene, 48413
Vmn2r-ps108 13 66808949 to 66814287 5338 - pseudogene vomeronasal 2, receptor, pseudogene 108
Gm48414 13 66845824 to 66846036 212 - pseudogene predicted gene, 48414
Gm38429 13 66849651 to 66850772 1121 - pseudogene predicted gene, 38429
Gm10323 13 66849651 to 66854871 5220 - protein coding gene predicted gene 10323
Cbx3-ps4 13 66864524 to 66865072 548 + pseudogene chromobox 3, pseudogene 4
Vmn2r-ps109 13 66869544 to 66873029 3485 - pseudogene vomeronasal 2, receptor, pseudogene 109
Gm5451 13 66874081 to 66874659 578 + pseudogene predicted gene 5451
Gm7911 13 66875090 to 66875710 620 - pseudogene predicted gene 7911
Uqcrb 13 66900621 to 66905350 4729 - protein coding gene ubiquinol-cytochrome c reductase binding protein
Cpgi5796 13 66904873 to 66905373 500 CpG island CpG island 5796
Tssr123084 13 66905322 to 66905370 48 - TSS region transcription start site region 123084
Gm10767 13 66905415 to 66909166 3751 + protein coding gene predicted gene 10767
Mterf3 13 66906968 to 66933088 26120 - protein coding gene mitochondrial transcription termination factor 3
Tssr120240 13 66918568 to 66918577 9 + TSS region transcription start site region 120240
Cpgi5797 13 66932681 to 66933985 1304 CpG island CpG island 5797
Tssr120241 13 66932786 to 66932794 8 + TSS region transcription start site region 120241
Tssr120242 13 66932802 to 66932843 41 + TSS region transcription start site region 120242
Ptdss1 13 66932830 to 66998401 65571 + protein coding gene phosphatidylserine synthase 1
Rsl2 13 66932830 to 68999541 2066711 heritable phenotypic marker regulator of sex limited protein 2
Tssr123085 13 66932916 to 66932927 11 - TSS region transcription start site region 123085
Tssr123086 13 66932929 to 66932947 18 - TSS region transcription start site region 123086
Tssr123087 13 66932980 to 66932989 9 - TSS region transcription start site region 123087
Tssr123088 13 66932998 to 66933009 11 - TSS region transcription start site region 123088
Tssr123089 13 66933014 to 66933069 55 - TSS region transcription start site region 123089
Tssr123090 13 66933080 to 66933092 12 - TSS region transcription start site region 123090
Tssr120243 13 66933346 to 66933357 11 + TSS region transcription start site region 120243
Tssr120244 13 66933376 to 66933383 7 + TSS region transcription start site region 120244
Tssr120245 13 66933384 to 66933424 40 + TSS region transcription start site region 120245
Tssr120246 13 66989296 to 66989300 4 + TSS region transcription start site region 120246
Tssr120247 13 66994913 to 66994918 5 + TSS region transcription start site region 120247
4933433G19Rik 13 66996818 to 67032405 35587 - antisense lncRNA gene RIKEN cDNA 4933433G19 gene
Tssr123091 13 67011526 to 67011533 7 - TSS region transcription start site region 123091
Zfp712 13 67038596 to 67061170 22574 - protein coding gene zinc finger protein 712
Gm48705 13 67050735 to 67051025 290 + pseudogene predicted gene, 48705
Cpgi5798 13 67060895 to 67061283 388 CpG island CpG island 5798
Tssr123092 13 67061131 to 67061178 47 - TSS region transcription start site region 123092
Zfp708 13 67069399 to 67097976 28577 - protein coding gene zinc finger protein 708
Gm28557 13 67069399 to 67108604 39205 - protein coding gene predicted gene 28557
Tssr123093 13 67081503 to 67081555 52 - TSS region transcription start site region 123093
Gm46440 13 67084561 to 67091795 7234 + antisense lncRNA gene predicted gene, 46440
Gm17938 13 67089485 to 67090130 645 + pseudogene predicted gene, 17938
Rslcan18 13 67096613 to 67114028 17415 - protein coding gene regulator of sex-limitation candidate 18
Cpgi5799 13 67108116 to 67108670 554 CpG island CpG island 5799
Tssr123094 13 67108546 to 67108609 63 - TSS region transcription start site region 123094
Tssr120248 13 67125102 to 67125112 10 + TSS region transcription start site region 120248
Zfp759 13 67125124 to 67142404 17280 + protein coding gene zinc finger protein 759
Tssr120249 13 67128191 to 67128217 26 + TSS region transcription start site region 120249
Tssr120250 13 67128219 to 67128251 32 + TSS region transcription start site region 120250
Gm48732 13 67143672 to 67145366 1694 - lincRNA gene predicted gene, 48732
Gm48733 13 67167781 to 67168778 997 + pseudogene predicted gene, 48733
Moo2 13 67170347 to 67170495 148 QTL modifier of obesity 2
D13Mit66 13 67170347 to 67170495 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 66
Eae13 13 67170347 to 67170495 148 QTL experimental allergic encephalomyelitis susceptibility 13
Tssr120251 13 67173156 to 67173204 48 + TSS region transcription start site region 120251
Rsl1 13 67173182 to 67183499 10317 + protein coding gene regulator of sex limited protein 1
Gm49646 13 67187098 to 67187319 221 + pseudogene predicted gene, 49646
Gm9626 13 67187387 to 67188177 790 + pseudogene predicted gene 9626
Tssr120252 13 67194496 to 67194517 21 + TSS region transcription start site region 120252
Zfp455 13 67194506 to 67209298 14792 + protein coding gene zinc finger protein 455
Gm49064 13 67226997 to 67229969 2972 - lincRNA gene predicted gene, 49064
Zfp458 13 67254918 to 67278466 23548 - protein coding gene zinc finger protein 458
Tssr123095 13 67269093 to 67269131 38 - TSS region transcription start site region 123095
F630042J09Rik 13 67278594 to 67283361 4767 + lincRNA gene RIKEN cDNA F630042J09 gene
Zfp457 13 67288137 to 67306412 18275 - protein coding gene zinc finger protein 457
Gm48824 13 67307334 to 67308907 1573 - lincRNA gene predicted gene, 48824
Zfp595 13 67312998 to 67332570 19572 - protein coding gene zinc finger protein 595
Gm28044 13 67317942 to 67360536 42594 - protein coding gene predicted gene, 28044
Tssr123096 13 67332498 to 67332510 12 - TSS region transcription start site region 123096
Tssr123097 13 67332525 to 67332553 28 - TSS region transcription start site region 123097
Zfp953 13 67339309 to 67360572 21263 - protein coding gene zinc finger protein 953
Gm28041 13 67345246 to 67375733 30487 - protein coding gene predicted gene, 28041
Tssr123098 13 67360554 to 67360595 41 - TSS region transcription start site region 123098
Gm17039 13 67360671 to 67365679 5008 + antisense lncRNA gene predicted gene 17039
Zfp456 13 67363584 to 67375763 12179 - protein coding gene zinc finger protein 456
Tssr123099 13 67375729 to 67375757 28 - TSS region transcription start site region 123099
Zfp429 13 67389327 to 67399767 10440 - protein coding gene zinc finger protein 429
Gm48900 13 67390475 to 67408858 18383 + antisense lncRNA gene predicted gene, 48900
Tssr123100 13 67399738 to 67399764 26 - TSS region transcription start site region 123100
Zfp459 13 67405709 to 67421418 15709 - protein coding gene zinc finger protein 459
Cpgi5800 13 67421106 to 67421482 376 CpG island CpG island 5800
Tssr123101 13 67421402 to 67421454 52 - TSS region transcription start site region 123101
Gm33787 13 67421442 to 67424481 3039 + lncRNA gene predicted gene, 33787
Zfp874a 13 67440431 to 67451624 11193 - protein coding gene zinc finger protein 874a
Tssr120253 13 67451247 to 67451259 12 + TSS region transcription start site region 120253
Tssr123102 13 67451591 to 67451638 47 - TSS region transcription start site region 123102
Gm38307 13 67451658 to 67453497 1839 + unclassified gene predicted gene, 38307
Gm7928 13 67460000 to 67460700 700 + pseudogene predicted gene 7928
D13Mit98 13 67468709 to 67468908 199 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 98
Elsgp2 13 67468709 to 67468908 199 QTL elevated serum gp70 2
Zfp874b 13 67471513 to 67484258 12745 - protein coding gene zinc finger protein 874b
Gm48899 13 67472478 to 67473500 1022 + antisense lncRNA gene predicted gene, 48899
Tssr123103 13 67484225 to 67484269 44 - TSS region transcription start site region 123103
Zfp58 13 67490167 to 67500522 10355 - protein coding gene zinc finger protein 58
Gm26965 13 67491152 to 67526151 34999 - protein coding gene predicted gene, 26965
Tssr123104 13 67495645 to 67495649 4 - TSS region transcription start site region 123104
Tssr120254 13 67499481 to 67499503 22 + TSS region transcription start site region 120254
Cpgi5801 13 67500067 to 67500522 455 CpG island CpG island 5801
Tssr123105 13 67500451 to 67500512 61 - TSS region transcription start site region 123105
Gm18261 13 67505524 to 67506446 922 - pseudogene predicted gene, 18261
Zfp87 13 67515781 to 67526177 10396 - protein coding gene zinc finger protein 87
Cpgi5802 13 67525866 to 67526348 482 CpG island CpG island 5802
Tssr123106 13 67526136 to 67526179 43 - TSS region transcription start site region 123106
Zfp748 13 67538641 to 67553152 14511 - protein coding gene zinc finger protein 748
Cpgi5803 13 67552816 to 67553350 534 CpG island CpG island 5803
9430065F17Rik 13 67553035 to 67564010 10975 + antisense lncRNA gene RIKEN cDNA 9430065F17 gene
Tssr123107 13 67553099 to 67553176 77 - TSS region transcription start site region 123107
Tssr120255 13 67586370 to 67586389 19 + TSS region transcription start site region 120255
Zfp729b 13 67589439 to 67609707 20268 - protein coding gene zinc finger protein 729b
Gm49345 13 67592159 to 67637769 45610 - protein coding gene predicted gene, 49345
Tssr123108 13 67609634 to 67609664 30 - TSS region transcription start site region 123108
Tssr123109 13 67609667 to 67609695 28 - TSS region transcription start site region 123109
Zfp729a 13 67616309 to 67638063 21754 - protein coding gene zinc finger protein 729a
Cpgi5804 13 67637427 to 67637682 255 CpG island CpG island 5804
Tssr123110 13 67637730 to 67637737 7 - TSS region transcription start site region 123110
Tssr123111 13 67637740 to 67637749 9 - TSS region transcription start site region 123111
Tssr123112 13 67637776 to 67637801 25 - TSS region transcription start site region 123112
Gm46439 13 67642545 to 67646495 3950 + pseudogene predicted gene, 46439
Gm48095 13 67658669 to 67667943 9274 + antisense lncRNA gene predicted gene, 48095
Tssr120256 13 67660370 to 67660375 5 + TSS region transcription start site region 120256
Gm26587 13 67660457 to 67661445 988 + pseudogene predicted gene, 26587
Zfp738 13 67667441 to 67683570 16129 - protein coding gene zinc finger protein 738
Tssr123113 13 67683475 to 67683562 87 - TSS region transcription start site region 123113
Gm26875 13 67699082 to 67700031 949 + pseudogene predicted gene, 26875
Zfp65 13 67705309 to 67729173 23864 - protein coding gene zinc finger protein 65
Tssr123114 13 67724264 to 67724340 76 - TSS region transcription start site region 123114
Gm48894 13 67725060 to 67725438 378 - pseudogene predicted gene, 48894
Tssr120257 13 67728736 to 67728766 30 + TSS region transcription start site region 120257
Tssr123115 13 67729109 to 67729145 36 - TSS region transcription start site region 123115
Tssr120258 13 67729231 to 67729244 13 + TSS region transcription start site region 120258
Zfp85os 13 67729262 to 67756838 27576 + antisense lncRNA gene zinc finger protein 85, opposite strand
Tssr120259 13 67744199 to 67744208 9 + TSS region transcription start site region 120259
Tssr120260 13 67744220 to 67744225 5 + TSS region transcription start site region 120260
Zfp85 13 67747800 to 67755134 7334 - protein coding gene zinc finger protein 85
Tssr123116 13 67755132 to 67755169 37 - TSS region transcription start site region 123116
Tssr123117 13 67755192 to 67755211 19 - TSS region transcription start site region 123117
Gm9894 13 67764247 to 67765065 818 - pseudogene predicted gene 9894
Tssr120261 13 67779683 to 67779768 85 + TSS region transcription start site region 120261
Zfp493 13 67779693 to 67789082 9389 + protein coding gene zinc finger protein 493
Cpgi5805 13 67779767 to 67780021 254 CpG island CpG island 5805
Tssr120262 13 67779785 to 67779796 11 + TSS region transcription start site region 120262
4930525G20Rik 13 67796594 to 67830985 34391 - antisense lncRNA gene RIKEN cDNA 4930525G20 gene
Tssr120263 13 67810170 to 67810173 3 + TSS region transcription start site region 120263
Gm9625 13 67810246 to 67811200 954 + pseudogene predicted gene 9625
Tssr120264 13 67813777 to 67813831 54 + TSS region transcription start site region 120264
Zfp273 13 67813816 to 67827000 13184 + protein coding gene zinc finger protein 273
Cpgi5806 13 67813821 to 67814251 430 CpG island CpG island 5806
Tssr123118 13 67830906 to 67830911 5 - TSS region transcription start site region 123118
Tssr123119 13 67830934 to 67830958 24 - TSS region transcription start site region 123119
Tssr123120 13 67830998 to 67831011 13 - TSS region transcription start site region 123120
Gm10037 13 67831106 to 67844035 12929 + protein coding gene predicted gene 10037
Tssr120265 13 67863324 to 67863328 4 + TSS region transcription start site region 120265
BC048507 13 67863326 to 67863923 597 + protein coding gene cDNA sequence BC048507
Tssr120266 13 67863351 to 67863372 21 + TSS region transcription start site region 120266
Tssr120267 13 67863379 to 67863393 14 + TSS region transcription start site region 120267
Cpgi5807 13 67863381 to 67863790 409 CpG island CpG island 5807
Gm40991 13 67885454 to 67889982 4528 - protein coding gene predicted gene, 40991
Gm7969 13 67949751 to 67954507 4756 + lincRNA gene predicted gene 7969
Gm48419 13 67965483 to 67970239 4756 + lincRNA gene predicted gene, 48419
Gm48423 13 67981215 to 67985971 4756 + lincRNA gene predicted gene, 48423
Gm48424 13 68060456 to 68060608 152 - pseudogene predicted gene, 48424