Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:66363946-66985803

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26754 13 66244270 to 66451277 207007 + lincRNA gene predicted gene, 26754
Gm26715 13 66349396 to 66365772 16376 + lincRNA gene predicted gene, 26715
Gm33043 13 66368764 to 66370696 1932 - lncRNA gene predicted gene, 33043
Gm48247 13 66393128 to 66393323 195 - pseudogene predicted gene, 48247
Gm48244 13 66396552 to 66397532 980 - pseudogene predicted gene, 48244
Gm19119 13 66398531 to 66399255 724 + pseudogene predicted gene, 19119
Gm48243 13 66412482 to 66412857 375 + pseudogene predicted gene, 48243
2410141K09Rik 13 66418114 to 66441118 23004 - protein coding gene RIKEN cDNA 2410141K09 gene
Tssr123082 13 66441125 to 66441146 21 - TSS region transcription start site region 123082
Tssr120236 13 66441276 to 66441288 12 + TSS region transcription start site region 120236
Gm48322 13 66454648 to 66455354 706 - pseudogene predicted gene, 48322
Tssr120237 13 66488195 to 66488235 40 + TSS region transcription start site region 120237
Gm48323 13 66490947 to 66491147 200 + pseudogene predicted gene, 48323
Gm26806 13 66503160 to 66519887 16727 - lincRNA gene predicted gene, 26806
Vmn2r-ps105 13 66512152 to 66515159 3007 + pseudogene vomeronasal 2, receptor, pseudogene 105
Gm46428 13 66519349 to 66526631 7282 + lncRNA gene predicted gene, 46428
Gm46427 13 66527953 to 66529383 1430 + protein coding gene predicted gene, 46427
Gm48351 13 66534025 to 66534222 197 + pseudogene predicted gene, 48351
Gm48360 13 66549713 to 66551220 1507 - pseudogene predicted gene, 48360
Tssr120238 13 66563898 to 66563916 18 + TSS region transcription start site region 120238
Gm19117 13 66565936 to 66592059 26123 - pseudogene predicted gene, 19117
Gm49531 13 66565945 to 66566038 93 - pseudogene predicted gene, 49531
Gm10769 13 66574447 to 66575296 849 + pseudogene predicted pseudogene 10769
Gm27501 13 66586810 to 66586916 106 - miRNA gene predicted gene, 27501
Gm45966 13 66589169 to 66598733 9564 + protein coding gene predicted gene, 45966
Tssr120239 13 66589173 to 66589180 7 + TSS region transcription start site region 120239
Gm49532 13 66591913 to 66592013 100 - pseudogene predicted gene, 49532
Gm48361 13 66621686 to 66622905 1219 - pseudogene predicted gene, 48361
Gm46429 13 66633005 to 66634986 1981 + lncRNA gene predicted gene, 46429
Gm18412 13 66668920 to 66669864 944 - pseudogene predicted gene, 18412
Zfp640 13 66668946 to 66680803 11857 - pseudogene zinc finger protein 640
Vmn2r-ps106 13 66682839 to 66688352 5513 - pseudogene vomeronasal 2, receptor, pseudogene 106
Gm40988 13 66695345 to 66711165 15820 + lincRNA gene predicted gene, 40988
Tssr123083 13 66698263 to 66698279 16 - TSS region transcription start site region 123083
Gm40989 13 66738371 to 66741313 2942 - lncRNA gene predicted gene, 40989
Gm48404 13 66756334 to 66756486 152 - pseudogene predicted gene, 48404
Gm48412 13 66777441 to 66779142 1701 + lincRNA gene predicted gene, 48412
Gm7896 13 66792583 to 66802563 9980 - protein coding gene predicted gene 7869
Gm48413 13 66799297 to 66799390 93 + pseudogene predicted gene, 48413
Vmn2r-ps108 13 66808949 to 66814287 5338 - pseudogene vomeronasal 2, receptor, pseudogene 108
Gm48414 13 66845824 to 66846036 212 - pseudogene predicted gene, 48414
Gm10323 13 66849651 to 66854871 5220 - protein coding gene predicted gene 10323
Gm38429 13 66849651 to 66850772 1121 - pseudogene predicted gene, 38429
Cbx3-ps4 13 66864524 to 66865072 548 + pseudogene chromobox 3, pseudogene 4
Vmn2r-ps109 13 66869544 to 66873029 3485 - pseudogene vomeronasal 2, receptor, pseudogene 109
Gm5451 13 66874081 to 66874659 578 + pseudogene predicted gene 5451
Gm7911 13 66875090 to 66875710 620 - pseudogene predicted gene 7911
Uqcrb 13 66900621 to 66905350 4729 - protein coding gene ubiquinol-cytochrome c reductase binding protein
Cpgi5796 13 66904873 to 66905373 500 CpG island CpG island 5796
Tssr123084 13 66905322 to 66905370 48 - TSS region transcription start site region 123084
Gm10767 13 66905415 to 66909166 3751 + protein coding gene predicted gene 10767
Mterf3 13 66906968 to 66933088 26120 - protein coding gene mitochondrial transcription termination factor 3
Tssr120240 13 66918568 to 66918577 9 + TSS region transcription start site region 120240
Cpgi5797 13 66932681 to 66933985 1304 CpG island CpG island 5797
Tssr120241 13 66932786 to 66932794 8 + TSS region transcription start site region 120241
Tssr120242 13 66932802 to 66932843 41 + TSS region transcription start site region 120242
Rsl2 13 66932830 to 68999541 2066711 heritable phenotypic marker regulator of sex limited protein 2
Ptdss1 13 66932830 to 66998401 65571 + protein coding gene phosphatidylserine synthase 1
Tssr123085 13 66932916 to 66932927 11 - TSS region transcription start site region 123085
Tssr123086 13 66932929 to 66932947 18 - TSS region transcription start site region 123086
Tssr123087 13 66932980 to 66932989 9 - TSS region transcription start site region 123087
Tssr123088 13 66932998 to 66933009 11 - TSS region transcription start site region 123088
Tssr123089 13 66933014 to 66933069 55 - TSS region transcription start site region 123089
Tssr123090 13 66933080 to 66933092 12 - TSS region transcription start site region 123090
Tssr120243 13 66933346 to 66933357 11 + TSS region transcription start site region 120243
Tssr120244 13 66933376 to 66933383 7 + TSS region transcription start site region 120244
Tssr120245 13 66933384 to 66933424 40 + TSS region transcription start site region 120245