Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:65435468-67126580

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn2r-ps96 13 65421636 to 65435538 13902 - pseudogene vomeronasal 2, receptor, pseudogene 96
Hmgb1-ps11 13 65436524 to 65437144 620 - pseudogene high mobility group box 1, pseudogene 11
Gm40985 13 65461756 to 65469447 7691 + lncRNA gene predicted gene, 40985
Gm48136 13 65478385 to 65479292 907 - pseudogene predicted gene, 48136
Gm48165 13 65487439 to 65624203 136764 + pseudogene predicted gene, 48165
Gm48168 13 65491789 to 65496793 5004 - lincRNA gene predicted gene, 48168
Gm48166 13 65493490 to 65630774 137284 + lincRNA gene predicted gene, 48166
Gm10139 13 65512678 to 65512848 170 + protein coding gene predicted gene 10139
Gm48171 13 65514187 to 65514978 791 + pseudogene predicted gene, 48171
Gm48169 13 65518174 to 65518412 238 + pseudogene predicted gene, 48169
Gm48167 13 65541990 to 65542205 215 - pseudogene predicted gene, 48167
Tssr123077 13 65557690 to 65557709 19 - TSS region transcription start site region 123077
Cbx3-ps2 13 65559168 to 65559711 543 + pseudogene chromobox 3, pseudogene 2
Vmn2r-ps97 13 65564185 to 65575340 11155 - pseudogene vomeronasal 2, receptor, pseudogene 97
Gm3829 13 65579063 to 65579659 596 - pseudogene predicted gene 3829
Gm26639 13 65590293 to 65591561 1268 - lincRNA gene predicted gene, 26639
Gm48170 13 65615824 to 65620243 4419 - lincRNA gene predicted gene, 48170
Gm48164 13 65623404 to 65624052 648 + pseudogene predicted gene, 48164
Gm19448 13 65639768 to 65660118 20350 + lncRNA gene predicted gene, 19448
Gm48185 13 65649558 to 65650349 791 + pseudogene predicted gene, 48185
Gm48186 13 65653504 to 65653742 238 + pseudogene predicted gene, 48186
Gm19428 13 65689613 to 65713454 23841 - protein coding gene predicted gene, 19428
Gm19118 13 65697063 to 65697160 97 + pseudogene predicted gene, 19118
Cpgi5794 13 65726812 to 65726998 186 CpG island CpG island 5794
Vmn2r-ps98 13 65727774 to 65734119 6345 - pseudogene vomeronasal 2, receptor, pseudogene 98
Gm38428 13 65761849 to 65762695 846 - pseudogene predicted gene, 38428
Platr2 13 65780905 to 65867305 86400 + lincRNA gene pluripotency associated transcript 2
Gm40986 13 65849063 to 65863393 14330 - lncRNA gene predicted gene, 40986
Gm7822 13 65874239 to 65874819 580 + pseudogene predicted gene 7822
Vmn2r-ps99 13 65875884 to 65889731 13847 + pseudogene vomeronasal 2, receptor, pseudogene 99
Cbx3-ps1 13 65894215 to 65894759 544 - pseudogene chromobox 3, pseudogene 1
Tssr120231 13 65897157 to 65897171 14 + TSS region transcription start site region 120231
Gm17353 13 65897183 to 65907988 10805 + protein coding gene predicted gene, 17353
Gm48218 13 65908223 to 65908904 681 + pseudogene predicted gene, 48218
Gm48219 13 65912526 to 65912759 233 + pseudogene predicted gene, 48219
Gm32476 13 65935670 to 65950327 14657 - lncRNA gene predicted gene, 32476
Vmn2r-ps100 13 65944054 to 65948541 4487 + pseudogene vomeronasal 2, receptor, pseudogene 100
Tssr120232 13 65950568 to 65950582 14 + TSS region transcription start site region 120232
Gm46425 13 65950589 to 65958927 8338 + protein coding gene predicted gene, 46425
Gm40987 13 65976343 to 65982791 6448 - lincRNA gene predicted gene, 40987
Tssr123078 13 65991076 to 65991111 35 - TSS region transcription start site region 123078
Gm48220 13 65994038 to 65995128 1090 + pseudogene predicted gene, 48220
Gm48221 13 65994049 to 65995400 1351 - lincRNA gene predicted gene, 48221
Tssr120233 13 66007544 to 66007554 10 + TSS region transcription start site region 120233
Cpgi5795 13 66007564 to 66007937 373 CpG island CpG island 5795
Rybp-ps 13 66007737 to 66008417 680 + pseudogene RING1 and YY1 binding protein, pseudogene
Tssr120234 13 66007873 to 66007883 10 + TSS region transcription start site region 120234
Gm48222 13 66032209 to 66040247 8038 + lincRNA gene predicted gene, 48222
Gm21931 13 66040567 to 66042029 1462 + pseudogene predicted gene, 21931
Gm3844 13 66062452 to 66062976 524 protein coding gene predicted gene 3844
Tssr123079 13 66062935 to 66062944 9 - TSS region transcription start site region 123079
Tssr123080 13 66062983 to 66063005 22 - TSS region transcription start site region 123080
Gm10324 13 66119547 to 66122836 3289 + protein coding gene predicted gene 10324
Gm45965 13 66163779 to 66165062 1283 + protein coding gene predicted gene, 45965
Gm48223 13 66177347 to 66178100 753 + lincRNA gene predicted gene, 48223
Gm17514 13 66183079 to 66203636 20557 - lincRNA gene predicted gene, 17514
Vmn2r-ps102 13 66193297 to 66198556 5259 + pseudogene vomeronasal 2, receptor, pseudogene 102
Tssr120235 13 66203735 to 66203748 13 + TSS region transcription start site region 120235
Gm48240 13 66221378 to 66222470 1092 - pseudogene predicted gene, 48240
Gm10772 13 66227319 to 66227573 254 - protein coding gene predicted gene 10772
Gm48241 13 66240777 to 66240929 152 + pseudogene predicted gene, 48241
Tssr123081 13 66244101 to 66244113 12 - TSS region transcription start site region 123081
Gm26754 13 66244270 to 66451277 207007 + lincRNA gene predicted gene, 26754
Vmn2r-ps103 13 66249287 to 66255510 6223 - pseudogene vomeronasal 2, receptor, pseudogene 103
Gm48245 13 66279919 to 66280057 138 - pseudogene predicted gene, 48245
Gm21029 13 66280468 to 66281580 1112 - pseudogene predicted gene, 21029
Gm46426 13 66281716 to 66284053 2337 - protein coding gene predicted gene, 46426
Gm18260 13 66308304 to 66309296 992 - pseudogene predicted gene, 18260
Gm48246 13 66334682 to 66334879 197 - pseudogene predicted gene, 48246
Gm46395 13 66339451 to 66340569 1118 - pseudogene predicted gene, 46395
C330022B21Rik 13 66340586 to 66342935 2349 - pseudogene RIKEN cDNA C330022B21 gene
Gm26715 13 66349396 to 66365772 16376 + lincRNA gene predicted gene, 26715
Vmn2r-ps104 13 66351314 to 66355797 4483 - pseudogene vomeronasal 2, receptor, pseudogene 104
Gm33043 13 66368764 to 66370696 1932 - lncRNA gene predicted gene, 33043
Gm48247 13 66393128 to 66393323 195 - pseudogene predicted gene, 48247
Gm48244 13 66396552 to 66397532 980 - pseudogene predicted gene, 48244
Gm19119 13 66398531 to 66399255 724 + pseudogene predicted gene, 19119
Gm48243 13 66412482 to 66412857 375 + pseudogene predicted gene, 48243
2410141K09Rik 13 66418114 to 66441118 23004 - protein coding gene RIKEN cDNA 2410141K09 gene
Tssr123082 13 66441125 to 66441146 21 - TSS region transcription start site region 123082
Tssr120236 13 66441276 to 66441288 12 + TSS region transcription start site region 120236
Gm48322 13 66454648 to 66455354 706 - pseudogene predicted gene, 48322
Tssr120237 13 66488195 to 66488235 40 + TSS region transcription start site region 120237
Gm48323 13 66490947 to 66491147 200 + pseudogene predicted gene, 48323
Gm26806 13 66503160 to 66519887 16727 - lincRNA gene predicted gene, 26806
Vmn2r-ps105 13 66512152 to 66515159 3007 + pseudogene vomeronasal 2, receptor, pseudogene 105
Gm46428 13 66519349 to 66526631 7282 + lncRNA gene predicted gene, 46428
Gm46427 13 66527953 to 66529383 1430 + protein coding gene predicted gene, 46427
Gm48351 13 66534025 to 66534222 197 + pseudogene predicted gene, 48351
Gm48360 13 66549713 to 66551220 1507 - pseudogene predicted gene, 48360
Tssr120238 13 66563898 to 66563916 18 + TSS region transcription start site region 120238
Gm19117 13 66565936 to 66592059 26123 - pseudogene predicted gene, 19117
Gm49531 13 66565945 to 66566038 93 - pseudogene predicted gene, 49531
Gm10769 13 66574447 to 66575296 849 + pseudogene predicted pseudogene 10769
Gm27501 13 66586810 to 66586916 106 - miRNA gene predicted gene, 27501
Gm45966 13 66589169 to 66598733 9564 + protein coding gene predicted gene, 45966
Tssr120239 13 66589173 to 66589180 7 + TSS region transcription start site region 120239
Gm49532 13 66591913 to 66592013 100 - pseudogene predicted gene, 49532
Gm48361 13 66621686 to 66622905 1219 - pseudogene predicted gene, 48361
Gm46429 13 66633005 to 66634986 1981 + lncRNA gene predicted gene, 46429
Gm18412 13 66668920 to 66669864 944 - pseudogene predicted gene, 18412
Zfp640 13 66668946 to 66680803 11857 - pseudogene zinc finger protein 640
Vmn2r-ps106 13 66682839 to 66688352 5513 - pseudogene vomeronasal 2, receptor, pseudogene 106
Gm40988 13 66695345 to 66711165 15820 + lincRNA gene predicted gene, 40988
Tssr123083 13 66698263 to 66698279 16 - TSS region transcription start site region 123083
Gm40989 13 66738371 to 66741313 2942 - lncRNA gene predicted gene, 40989
Gm48404 13 66756334 to 66756486 152 - pseudogene predicted gene, 48404
Gm48412 13 66777441 to 66779142 1701 + lincRNA gene predicted gene, 48412
Gm7896 13 66792583 to 66802563 9980 - protein coding gene predicted gene 7869
Gm48413 13 66799297 to 66799390 93 + pseudogene predicted gene, 48413
Vmn2r-ps108 13 66808949 to 66814287 5338 - pseudogene vomeronasal 2, receptor, pseudogene 108
Gm48414 13 66845824 to 66846036 212 - pseudogene predicted gene, 48414
Gm38429 13 66849651 to 66850772 1121 - pseudogene predicted gene, 38429
Gm10323 13 66849651 to 66854871 5220 - protein coding gene predicted gene 10323
Cbx3-ps4 13 66864524 to 66865072 548 + pseudogene chromobox 3, pseudogene 4
Vmn2r-ps109 13 66869544 to 66873029 3485 - pseudogene vomeronasal 2, receptor, pseudogene 109
Gm5451 13 66874081 to 66874659 578 + pseudogene predicted gene 5451
Gm7911 13 66875090 to 66875710 620 - pseudogene predicted gene 7911
Uqcrb 13 66900621 to 66905350 4729 - protein coding gene ubiquinol-cytochrome c reductase binding protein
Cpgi5796 13 66904873 to 66905373 500 CpG island CpG island 5796
Tssr123084 13 66905322 to 66905370 48 - TSS region transcription start site region 123084
Gm10767 13 66905415 to 66909166 3751 + protein coding gene predicted gene 10767
Mterf3 13 66906968 to 66933088 26120 - protein coding gene mitochondrial transcription termination factor 3
Tssr120240 13 66918568 to 66918577 9 + TSS region transcription start site region 120240
Cpgi5797 13 66932681 to 66933985 1304 CpG island CpG island 5797
Tssr120241 13 66932786 to 66932794 8 + TSS region transcription start site region 120241
Tssr120242 13 66932802 to 66932843 41 + TSS region transcription start site region 120242
Ptdss1 13 66932830 to 66998401 65571 + protein coding gene phosphatidylserine synthase 1
Rsl2 13 66932830 to 68999541 2066711 heritable phenotypic marker regulator of sex limited protein 2
Tssr123085 13 66932916 to 66932927 11 - TSS region transcription start site region 123085
Tssr123086 13 66932929 to 66932947 18 - TSS region transcription start site region 123086
Tssr123087 13 66932980 to 66932989 9 - TSS region transcription start site region 123087
Tssr123088 13 66932998 to 66933009 11 - TSS region transcription start site region 123088
Tssr123089 13 66933014 to 66933069 55 - TSS region transcription start site region 123089
Tssr123090 13 66933080 to 66933092 12 - TSS region transcription start site region 123090
Tssr120243 13 66933346 to 66933357 11 + TSS region transcription start site region 120243
Tssr120244 13 66933376 to 66933383 7 + TSS region transcription start site region 120244
Tssr120245 13 66933384 to 66933424 40 + TSS region transcription start site region 120245
Tssr120246 13 66989296 to 66989300 4 + TSS region transcription start site region 120246
Tssr120247 13 66994913 to 66994918 5 + TSS region transcription start site region 120247
4933433G19Rik 13 66996818 to 67032405 35587 - antisense lncRNA gene RIKEN cDNA 4933433G19 gene
Tssr123091 13 67011526 to 67011533 7 - TSS region transcription start site region 123091
Zfp712 13 67038596 to 67061170 22574 - protein coding gene zinc finger protein 712
Gm48705 13 67050735 to 67051025 290 + pseudogene predicted gene, 48705
Cpgi5798 13 67060895 to 67061283 388 CpG island CpG island 5798
Tssr123092 13 67061131 to 67061178 47 - TSS region transcription start site region 123092
Gm28557 13 67069399 to 67108604 39205 - protein coding gene predicted gene 28557
Zfp708 13 67069399 to 67097976 28577 - protein coding gene zinc finger protein 708
Tssr123093 13 67081503 to 67081555 52 - TSS region transcription start site region 123093
Gm46440 13 67084561 to 67091795 7234 + antisense lncRNA gene predicted gene, 46440
Gm17938 13 67089485 to 67090130 645 + pseudogene predicted gene, 17938
Rslcan18 13 67096613 to 67114028 17415 - protein coding gene regulator of sex-limitation candidate 18
Cpgi5799 13 67108116 to 67108670 554 CpG island CpG island 5799
Tssr123094 13 67108546 to 67108609 63 - TSS region transcription start site region 123094
Tssr120248 13 67125102 to 67125112 10 + TSS region transcription start site region 120248
Zfp759 13 67125124 to 67142404 17280 + protein coding gene zinc finger protein 759