Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:64642376-65583142

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdac 13 56127983 to 64961758 8833775 heritable phenotypic marker modifier of Dac
Gm4935 13 64673863 to 64675060 1197 + pseudogene predicted gene 4935
Gm47194 13 64674539 to 64685275 10736 - lincRNA gene predicted gene, 47194
Tssr120222 13 64687632 to 64687636 4 + TSS region transcription start site region 120222
Gm7065 13 64703158 to 64703631 473 + pseudogene predicted gene 7065
Cntnap3 13 64737591 to 64904029 166438 - protein coding gene contactin associated protein-like 3
Cpgi5784 13 64903910 to 64904197 287 CpG island CpG island 5784
Tssr123065 13 64903949 to 64903995 46 - TSS region transcription start site region 123065
Eif1-ps2 13 64913972 to 64914310 338 + pseudogene eukaryotic translation initiation factor 1, pseudogene 2
Spata31 13 64917406 to 64923194 5788 + protein coding gene spermatogenesis associated 31
Tssr120223 13 64917431 to 64917466 35 + TSS region transcription start site region 120223
D13Dcr12 13 64919565 to 64919660 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 12
Gm4811 13 64927942 to 64929161 1219 - pseudogene predicted gene 4811
D13Mit310 13 64961637 to 64961758 121 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 310
Gm6888 13 64998934 to 65000335 1401 + pseudogene predicted gene 6888
Tssr120224 13 65033046 to 65033065 19 + TSS region transcription start site region 120224
Spata31d1c 13 65033058 to 65038004 4946 + protein coding gene spermatogenesis associated 31 subfamily D, member 1C
Prss47 13 65044606 to 65052760 8154 - protein coding gene protease, serine 47
Tssr4109 13 65052380 to 65052386 6 - TSS region transcription start site region 4109
Tssr123066 13 65052390 to 65052400 10 - TSS region transcription start site region 123066
Tssr123067 13 65052816 to 65052823 7 - TSS region transcription start site region 123067
Mfsd14b 13 65065030 to 65113002 47972 - protein coding gene major facilitator superfamily domain containing 14B
Tssr123068 13 65066518 to 65066529 11 - TSS region transcription start site region 123068
Tssr123069 13 65097139 to 65097157 18 - TSS region transcription start site region 123069
Cpgi5785 13 65112376 to 65113142 766 CpG island CpG island 5785
Tssr123070 13 65112879 to 65112897 18 - TSS region transcription start site region 123070
Tssr123071 13 65112904 to 65112962 58 - TSS region transcription start site region 123071
Tssr123072 13 65112963 to 65112987 24 - TSS region transcription start site region 123072
Tssr123073 13 65112994 to 65113004 10 - TSS region transcription start site region 123073
Tssr123074 13 65122205 to 65122228 23 - TSS region transcription start site region 123074
Gm3785 13 65125878 to 65126079 201 + pseudogene predicted gene 3785
Olfr465-ps1 13 65144261 to 65145208 947 + pseudogene olfactory receptor 465, pseudogene 1
Olfr466 13 65152226 to 65153152 926 + protein coding gene olfactory receptor 466
Gm24130 13 65158258 to 65158408 150 + snoRNA gene predicted gene, 24130
Cpgi5786 13 65175736 to 65176651 915 CpG island CpG island 5786
Nlrp4f 13 65177111 to 65205716 28605 - protein coding gene NLR family, pyrin domain containing 4F
Tssr123075 13 65205961 to 65205969 8 - TSS region transcription start site region 123075
Gm47249 13 65212111 to 65214903 2792 + lincRNA gene predicted gene, 47249
Cpgi5787 13 65240675 to 65242729 2054 CpG island CpG island 5787
Tssr120225 13 65240918 to 65240970 52 + TSS region transcription start site region 120225
Tssr120226 13 65241474 to 65241499 25 + TSS region transcription start site region 120226
Tssr120227 13 65241506 to 65241526 20 + TSS region transcription start site region 120227
Gm36445 13 65241753 to 65250154 8401 + lincRNA gene predicted gene, 36445
Gm47250 13 65243717 to 65243867 150 - pseudogene predicted gene, 47250
Gm47251 13 65252704 to 65253703 999 - lincRNA gene predicted gene, 47251
Cpgi5788 13 65257285 to 65257657 372 CpG island CpG island 5788
Cpgi5789 13 65258071 to 65260151 2080 CpG island CpG island 5789
Gm10775 13 65259539 to 65260826 1287 + protein coding gene predicted gene 10775
Gm47254 13 65264677 to 65264878 201 - pseudogene predicted gene, 47254
Cpgi5790 13 65278484 to 65279092 608 CpG island CpG island 5790
Zfp369 13 65278519 to 65297804 19285 + protein coding gene zinc finger protein 369
Tssr123076 13 65278709 to 65278752 43 - TSS region transcription start site region 123076
Tssr120228 13 65278795 to 65278808 13 + TSS region transcription start site region 120228
Tssr120229 13 65278810 to 65278838 28 + TSS region transcription start site region 120229
Tssr120230 13 65278839 to 65278866 27 + TSS region transcription start site region 120230
Gm47258 13 65289453 to 65290794 1341 + unclassified gene predicted gene, 47258
Cpgi5791 13 65310023 to 65310207 184 CpG island CpG island 5791
Cpgi5792 13 65311304 to 65311656 352 CpG island CpG island 5792
Gm3800 13 65313758 to 65314311 553 + pseudogene predicted gene 3800
Gm47263 13 65332907 to 65333113 206 - pseudogene predicted gene, 47263
Gm7762 13 65336862 to 65348585 11723 - lincRNA gene predicted gene 7762
Gm47264 13 65345127 to 65345282 155 + pseudogene predicted gene, 47264
Cpgi5793 13 65352300 to 65352537 237 CpG island CpG island 5793
Vmn2r-ps95 13 65353256 to 65364427 11171 - pseudogene vomeronasal 2, receptor, pseudogene 95
Gm7768 13 65368150 to 65368746 596 - pseudogene predicted gene 7768
Gm40983 13 65380329 to 65382097 1768 + lincRNA gene predicted gene, 40983
Gm40982 13 65381228 to 65381866 638 - lncRNA gene predicted gene, 40982
Gm48103 13 65396007 to 65396138 131 - pseudogene predicted gene, 48103
Gm31714 13 65396483 to 65415122 18639 - protein coding gene predicted gene, 31714
Gm21930 13 65396555 to 65397678 1123 - pseudogene predicted gene, 21930
Gm48111 13 65404296 to 65408136 3840 + pseudogene predicted gene, 48111
Cbx3-ps5 13 65416601 to 65417144 543 + pseudogene chromobox 3, pseudogene 5
Vmn2r-ps96 13 65421636 to 65435538 13902 - pseudogene vomeronasal 2, receptor, pseudogene 96
Hmgb1-ps11 13 65436524 to 65437144 620 - pseudogene high mobility group box 1, pseudogene 11
Gm40985 13 65461756 to 65469447 7691 + lncRNA gene predicted gene, 40985
Gm48136 13 65478385 to 65479292 907 - pseudogene predicted gene, 48136
Gm48165 13 65487439 to 65624203 136764 + pseudogene predicted gene, 48165
Gm48168 13 65491789 to 65496793 5004 - lincRNA gene predicted gene, 48168
Gm48166 13 65493490 to 65630774 137284 + lincRNA gene predicted gene, 48166
Gm10139 13 65512678 to 65512848 170 + protein coding gene predicted gene 10139
Gm48171 13 65514187 to 65514978 791 + pseudogene predicted gene, 48171
Gm48169 13 65518174 to 65518412 238 + pseudogene predicted gene, 48169
Gm48167 13 65541990 to 65542205 215 - pseudogene predicted gene, 48167
Tssr123077 13 65557690 to 65557709 19 - TSS region transcription start site region 123077
Cbx3-ps2 13 65559168 to 65559711 543 + pseudogene chromobox 3, pseudogene 2
Vmn2r-ps97 13 65564185 to 65575340 11155 - pseudogene vomeronasal 2, receptor, pseudogene 97
Gm3829 13 65579063 to 65579659 596 - pseudogene predicted gene 3829