Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:64334272-64914760

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31128 13 64316550 to 64343787 27237 - lncRNA gene predicted gene, 31128
Gm47123 13 64361052 to 64363022 1970 + antisense lncRNA gene predicted gene, 47123
Gm49230 13 64361343 to 64361737 394 - pseudogene predicted gene, 49230
Ctsl 13 64361890 to 64370748 8858 - protein coding gene cathepsin L
Tssr123036 13 64363000 to 64363003 3 - TSS region transcription start site region 123036
Tssr123037 13 64363688 to 64363699 11 - TSS region transcription start site region 123037
Tssr123038 13 64363748 to 64363759 11 - TSS region transcription start site region 123038
Tssr120207 13 64363795 to 64363805 10 + TSS region transcription start site region 120207
Tssr123039 13 64363851 to 64363862 11 - TSS region transcription start site region 123039
Tssr123040 13 64363936 to 64364054 118 - TSS region transcription start site region 123040
Tssr123041 13 64364056 to 64364138 82 - TSS region transcription start site region 123041
Tssr123042 13 64364141 to 64364195 54 - TSS region transcription start site region 123042
Tssr120208 13 64364163 to 64364175 12 + TSS region transcription start site region 120208
Tssr123043 13 64365233 to 64365240 7 - TSS region transcription start site region 123043
Tssr123044 13 64365253 to 64365331 78 - TSS region transcription start site region 123044
Tssr120209 13 64365281 to 64365295 14 + TSS region transcription start site region 120209
Tssr123045 13 64366162 to 64366188 26 - TSS region transcription start site region 123045
Tssr123046 13 64366508 to 64366596 88 - TSS region transcription start site region 123046
Tssr123047 13 64366600 to 64366652 52 - TSS region transcription start site region 123047
Tssr123048 13 64366897 to 64366937 40 - TSS region transcription start site region 123048
Tssr123049 13 64366939 to 64367095 156 - TSS region transcription start site region 123049
Tssr120210 13 64367026 to 64367073 47 + TSS region transcription start site region 120210
Tssr120211 13 64367882 to 64367899 17 + TSS region transcription start site region 120211
Tssr123050 13 64367882 to 64367951 69 - TSS region transcription start site region 123050
Tssr120212 13 64367966 to 64367982 16 + TSS region transcription start site region 120212
Tssr123051 13 64367972 to 64368021 49 - TSS region transcription start site region 123051
Tssr120213 13 64368126 to 64368208 82 + TSS region transcription start site region 120213
Tssr123052 13 64368149 to 64368227 78 - TSS region transcription start site region 123052
Tssr123053 13 64368233 to 64368244 11 - TSS region transcription start site region 123053
Tssr123054 13 64368756 to 64368768 12 - TSS region transcription start site region 123054
Tssr123055 13 64368819 to 64368831 12 - TSS region transcription start site region 123055
Tssr123056 13 64369016 to 64369029 13 - TSS region transcription start site region 123056
Tssr123057 13 64369050 to 64369179 129 - TSS region transcription start site region 123057
Cpgi5780 13 64369709 to 64370562 853 CpG island CpG island 5780
Tssr123058 13 64370298 to 64370315 17 - TSS region transcription start site region 123058
Tssr123059 13 64370345 to 64370362 17 - TSS region transcription start site region 123059
Tssr120214 13 64370442 to 64370464 22 + TSS region transcription start site region 120214
Tssr123060 13 64408850 to 64408853 3 - TSS region transcription start site region 123060
Tssr120215 13 64410777 to 64410781 4 + TSS region transcription start site region 120215
Tssr123061 13 64413379 to 64413409 30 - TSS region transcription start site region 123061
Tssr123062 13 64421657 to 64421674 17 - TSS region transcription start site region 123062
Tssr120216 13 64422431 to 64422440 9 + TSS region transcription start site region 120216
1700015C15Rik 13 64427956 to 64432436 4480 - antisense lncRNA gene RIKEN cDNA 1700015C15 gene
Cpgi5781 13 64432222 to 64433163 941 CpG island CpG island 5781
Cdk20 13 64432319 to 64439722 7403 + protein coding gene cyclin-dependent kinase 20
Tssr120217 13 64432347 to 64432419 72 + TSS region transcription start site region 120217
Tssr123063 13 64432462 to 64432495 33 - TSS region transcription start site region 123063
Tssr120218 13 64432479 to 64432557 78 + TSS region transcription start site region 120218
Tssr120219 13 64432595 to 64432609 14 + TSS region transcription start site region 120219
Tssr120220 13 64432763 to 64432779 16 + TSS region transcription start site region 120220
Gm31218 13 64449477 to 64508402 58925 + lincRNA gene predicted gene, 31218
Gm7712 13 64457412 to 64458788 1376 - pseudogene predicted gene 7712
Cpgi5782 13 64457689 to 64457872 183 CpG island CpG island 5782
Cpgi5783 13 64458838 to 64459021 183 CpG island CpG island 5783
Fam240b 13 64481246 to 64497792 16546 - protein coding gene family with sequence similarity 240 member B
Gm4810 13 64509490 to 64511096 1606 + pseudogene predicted gene 4810
Tssr120221 13 64510264 to 64510277 13 + TSS region transcription start site region 120221
Gm47190 13 64515443 to 64515854 411 - pseudogene predicted gene, 47190
Gm47191 13 64611860 to 64619498 7638 + pseudogene predicted gene, 47191
Gm47193 13 64619550 to 64625002 5452 + lincRNA gene predicted gene, 47193
Gm5791 13 64624272 to 64624760 488 - pseudogene predicted gene 5791
Tssr123064 13 64624782 to 64624807 25 - TSS region transcription start site region 123064
Gm4935 13 64673863 to 64675060 1197 + pseudogene predicted gene 4935
Gm47194 13 64674539 to 64685275 10736 - lincRNA gene predicted gene, 47194
Tssr120222 13 64687632 to 64687636 4 + TSS region transcription start site region 120222
Gm7065 13 64703158 to 64703631 473 + pseudogene predicted gene 7065
Cntnap3 13 64737591 to 64904029 166438 - protein coding gene contactin associated protein-like 3
Cpgi5784 13 64903910 to 64904197 287 CpG island CpG island 5784
Tssr123065 13 64903949 to 64903995 46 - TSS region transcription start site region 123065
Eif1-ps2 13 64913972 to 64914310 338 + pseudogene eukaryotic translation initiation factor 1, pseudogene 2