Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:64192285-66322657

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231 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdac 13 56127983 to 64961758 8833775 heritable phenotypic marker modifier of Dac
Cdc14b 13 64192545 to 64274988 82443 - protein coding gene CDC14 cell division cycle 14B
Tssr120203 13 64204002 to 64204011 9 + TSS region transcription start site region 120203
Gm46424 13 64210523 to 64210690 167 + pseudogene predicted gene, 46424
Cpgi5777 13 64248394 to 64249115 721 CpG island CpG island 5777
Tssr123023 13 64248495 to 64248538 43 - TSS region transcription start site region 123023
Tssr123024 13 64248623 to 64248648 25 - TSS region transcription start site region 123024
Tssr120204 13 64248649 to 64248675 26 + TSS region transcription start site region 120204
1810034E14Rik 13 64248700 to 64268145 19445 + antisense lncRNA gene RIKEN cDNA 1810034E14 gene
D13Ertd666e 13 64258899 to 64259103 204 DNA segment DNA segment, Chr 13, ERATO Doi 666, expressed
Gm47004 13 64262114 to 64264374 2260 + unclassified gene predicted gene, 47004
Tssr123025 13 64272619 to 64272623 4 - TSS region transcription start site region 123025
Cpgi5778 13 64273928 to 64275701 1773 CpG island CpG island 5778
Tssr123026 13 64274922 to 64274947 25 - TSS region transcription start site region 123026
Tssr123027 13 64274950 to 64274959 9 - TSS region transcription start site region 123027
Tssr123028 13 64274962 to 64275004 42 - TSS region transcription start site region 123028
Tssr123029 13 64275031 to 64275042 11 - TSS region transcription start site region 123029
Tssr120205 13 64275120 to 64275131 11 + TSS region transcription start site region 120205
Tssr120206 13 64276258 to 64276262 4 + TSS region transcription start site region 120206
Tssr123030 13 64289156 to 64289158 2 - TSS region transcription start site region 123030
Gm47003 13 64291077 to 64298039 6962 + antisense lncRNA gene predicted gene, 47003
Prxl2c 13 64291836 to 64312710 20874 - protein coding gene peroxiredoxin like 2C
Gm25654 13 64296437 to 64296524 87 - snRNA gene predicted gene, 25654
D13Dcr11 13 64299118 to 64299213 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 11
Tssr123031 13 64307064 to 64307068 4 - TSS region transcription start site region 123031
Cpgi5779 13 64312120 to 64312964 844 CpG island CpG island 5779
Tssr123032 13 64312568 to 64312623 55 - TSS region transcription start site region 123032
Tssr123033 13 64312628 to 64312654 26 - TSS region transcription start site region 123033
Tssr123034 13 64312676 to 64312746 70 - TSS region transcription start site region 123034
Gm31128 13 64316550 to 64343787 27237 - lncRNA gene predicted gene, 31128
Tssr123035 13 64320386 to 64320391 5 - TSS region transcription start site region 123035
Gm47123 13 64361052 to 64363022 1970 + antisense lncRNA gene predicted gene, 47123
Gm49230 13 64361343 to 64361737 394 - pseudogene predicted gene, 49230
Ctsl 13 64361890 to 64370748 8858 - protein coding gene cathepsin L
Tssr123036 13 64363000 to 64363003 3 - TSS region transcription start site region 123036
Tssr123037 13 64363688 to 64363699 11 - TSS region transcription start site region 123037
Tssr123038 13 64363748 to 64363759 11 - TSS region transcription start site region 123038
Tssr120207 13 64363795 to 64363805 10 + TSS region transcription start site region 120207
Tssr123039 13 64363851 to 64363862 11 - TSS region transcription start site region 123039
Tssr123040 13 64363936 to 64364054 118 - TSS region transcription start site region 123040
Tssr123041 13 64364056 to 64364138 82 - TSS region transcription start site region 123041
Tssr123042 13 64364141 to 64364195 54 - TSS region transcription start site region 123042
Tssr120208 13 64364163 to 64364175 12 + TSS region transcription start site region 120208
Tssr123043 13 64365233 to 64365240 7 - TSS region transcription start site region 123043
Tssr123044 13 64365253 to 64365331 78 - TSS region transcription start site region 123044
Tssr120209 13 64365281 to 64365295 14 + TSS region transcription start site region 120209
Tssr123045 13 64366162 to 64366188 26 - TSS region transcription start site region 123045
Tssr123046 13 64366508 to 64366596 88 - TSS region transcription start site region 123046
Tssr123047 13 64366600 to 64366652 52 - TSS region transcription start site region 123047
Tssr123048 13 64366897 to 64366937 40 - TSS region transcription start site region 123048
Tssr123049 13 64366939 to 64367095 156 - TSS region transcription start site region 123049
Tssr120210 13 64367026 to 64367073 47 + TSS region transcription start site region 120210
Tssr120211 13 64367882 to 64367899 17 + TSS region transcription start site region 120211
Tssr123050 13 64367882 to 64367951 69 - TSS region transcription start site region 123050
Tssr120212 13 64367966 to 64367982 16 + TSS region transcription start site region 120212
Tssr123051 13 64367972 to 64368021 49 - TSS region transcription start site region 123051
Tssr120213 13 64368126 to 64368208 82 + TSS region transcription start site region 120213
Tssr123052 13 64368149 to 64368227 78 - TSS region transcription start site region 123052
Tssr123053 13 64368233 to 64368244 11 - TSS region transcription start site region 123053
Tssr123054 13 64368756 to 64368768 12 - TSS region transcription start site region 123054
Tssr123055 13 64368819 to 64368831 12 - TSS region transcription start site region 123055
Tssr123056 13 64369016 to 64369029 13 - TSS region transcription start site region 123056
Tssr123057 13 64369050 to 64369179 129 - TSS region transcription start site region 123057
Cpgi5780 13 64369709 to 64370562 853 CpG island CpG island 5780
Tssr123058 13 64370298 to 64370315 17 - TSS region transcription start site region 123058
Tssr123059 13 64370345 to 64370362 17 - TSS region transcription start site region 123059
Tssr120214 13 64370442 to 64370464 22 + TSS region transcription start site region 120214
Tssr123060 13 64408850 to 64408853 3 - TSS region transcription start site region 123060
Tssr120215 13 64410777 to 64410781 4 + TSS region transcription start site region 120215
Tssr123061 13 64413379 to 64413409 30 - TSS region transcription start site region 123061
Tssr123062 13 64421657 to 64421674 17 - TSS region transcription start site region 123062
Tssr120216 13 64422431 to 64422440 9 + TSS region transcription start site region 120216
1700015C15Rik 13 64427956 to 64432436 4480 - antisense lncRNA gene RIKEN cDNA 1700015C15 gene
Cpgi5781 13 64432222 to 64433163 941 CpG island CpG island 5781
Cdk20 13 64432319 to 64439722 7403 + protein coding gene cyclin-dependent kinase 20
Tssr120217 13 64432347 to 64432419 72 + TSS region transcription start site region 120217
Tssr123063 13 64432462 to 64432495 33 - TSS region transcription start site region 123063
Tssr120218 13 64432479 to 64432557 78 + TSS region transcription start site region 120218
Tssr120219 13 64432595 to 64432609 14 + TSS region transcription start site region 120219
Tssr120220 13 64432763 to 64432779 16 + TSS region transcription start site region 120220
Gm31218 13 64449477 to 64508402 58925 + lincRNA gene predicted gene, 31218
Gm7712 13 64457412 to 64458788 1376 - pseudogene predicted gene 7712
Cpgi5782 13 64457689 to 64457872 183 CpG island CpG island 5782
Cpgi5783 13 64458838 to 64459021 183 CpG island CpG island 5783
Fam240b 13 64481246 to 64497792 16546 - protein coding gene family with sequence similarity 240 member B
Gm4810 13 64509490 to 64511096 1606 + pseudogene predicted gene 4810
Tssr120221 13 64510264 to 64510277 13 + TSS region transcription start site region 120221
Gm47190 13 64515443 to 64515854 411 - pseudogene predicted gene, 47190
Gm47191 13 64611860 to 64619498 7638 + pseudogene predicted gene, 47191
Gm47193 13 64619550 to 64625002 5452 + lincRNA gene predicted gene, 47193
Gm5791 13 64624272 to 64624760 488 - pseudogene predicted gene 5791
Tssr123064 13 64624782 to 64624807 25 - TSS region transcription start site region 123064
Gm4935 13 64673863 to 64675060 1197 + pseudogene predicted gene 4935
Gm47194 13 64674539 to 64685275 10736 - lincRNA gene predicted gene, 47194
Tssr120222 13 64687632 to 64687636 4 + TSS region transcription start site region 120222
Gm7065 13 64703158 to 64703631 473 + pseudogene predicted gene 7065
Cntnap3 13 64737591 to 64904029 166438 - protein coding gene contactin associated protein-like 3
Cpgi5784 13 64903910 to 64904197 287 CpG island CpG island 5784
Tssr123065 13 64903949 to 64903995 46 - TSS region transcription start site region 123065
Eif1-ps2 13 64913972 to 64914310 338 + pseudogene eukaryotic translation initiation factor 1, pseudogene 2
Spata31 13 64917406 to 64923194 5788 + protein coding gene spermatogenesis associated 31
Tssr120223 13 64917431 to 64917466 35 + TSS region transcription start site region 120223
D13Dcr12 13 64919565 to 64919660 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 12
Gm4811 13 64927942 to 64929161 1219 - pseudogene predicted gene 4811
D13Mit310 13 64961637 to 64961758 121 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 310
Gm6888 13 64998934 to 65000335 1401 + pseudogene predicted gene 6888
Tssr120224 13 65033046 to 65033065 19 + TSS region transcription start site region 120224
Spata31d1c 13 65033058 to 65038004 4946 + protein coding gene spermatogenesis associated 31 subfamily D, member 1C
Prss47 13 65044606 to 65052760 8154 - protein coding gene protease, serine 47
Tssr4109 13 65052380 to 65052386 6 - TSS region transcription start site region 4109
Tssr123066 13 65052390 to 65052400 10 - TSS region transcription start site region 123066
Tssr123067 13 65052816 to 65052823 7 - TSS region transcription start site region 123067
Mfsd14b 13 65065030 to 65113002 47972 - protein coding gene major facilitator superfamily domain containing 14B
Tssr123068 13 65066518 to 65066529 11 - TSS region transcription start site region 123068
Tssr123069 13 65097139 to 65097157 18 - TSS region transcription start site region 123069
Cpgi5785 13 65112376 to 65113142 766 CpG island CpG island 5785
Tssr123070 13 65112879 to 65112897 18 - TSS region transcription start site region 123070
Tssr123071 13 65112904 to 65112962 58 - TSS region transcription start site region 123071
Tssr123072 13 65112963 to 65112987 24 - TSS region transcription start site region 123072
Tssr123073 13 65112994 to 65113004 10 - TSS region transcription start site region 123073
Tssr123074 13 65122205 to 65122228 23 - TSS region transcription start site region 123074
Gm3785 13 65125878 to 65126079 201 + pseudogene predicted gene 3785
Olfr465-ps1 13 65144261 to 65145208 947 + pseudogene olfactory receptor 465, pseudogene 1
Olfr466 13 65152226 to 65153152 926 + protein coding gene olfactory receptor 466
Gm24130 13 65158258 to 65158408 150 + snoRNA gene predicted gene, 24130
Cpgi5786 13 65175736 to 65176651 915 CpG island CpG island 5786
Nlrp4f 13 65177111 to 65205716 28605 - protein coding gene NLR family, pyrin domain containing 4F
Tssr123075 13 65205961 to 65205969 8 - TSS region transcription start site region 123075
Gm47249 13 65212111 to 65214903 2792 + lincRNA gene predicted gene, 47249
Cpgi5787 13 65240675 to 65242729 2054 CpG island CpG island 5787
Tssr120225 13 65240918 to 65240970 52 + TSS region transcription start site region 120225
Tssr120226 13 65241474 to 65241499 25 + TSS region transcription start site region 120226
Tssr120227 13 65241506 to 65241526 20 + TSS region transcription start site region 120227
Gm36445 13 65241753 to 65250154 8401 + lincRNA gene predicted gene, 36445
Gm47250 13 65243717 to 65243867 150 - pseudogene predicted gene, 47250
Gm47251 13 65252704 to 65253703 999 - lincRNA gene predicted gene, 47251
Cpgi5788 13 65257285 to 65257657 372 CpG island CpG island 5788
Cpgi5789 13 65258071 to 65260151 2080 CpG island CpG island 5789
Gm10775 13 65259539 to 65260826 1287 + protein coding gene predicted gene 10775
Gm47254 13 65264677 to 65264878 201 - pseudogene predicted gene, 47254
Cpgi5790 13 65278484 to 65279092 608 CpG island CpG island 5790
Zfp369 13 65278519 to 65297804 19285 + protein coding gene zinc finger protein 369
Tssr123076 13 65278709 to 65278752 43 - TSS region transcription start site region 123076
Tssr120228 13 65278795 to 65278808 13 + TSS region transcription start site region 120228
Tssr120229 13 65278810 to 65278838 28 + TSS region transcription start site region 120229
Tssr120230 13 65278839 to 65278866 27 + TSS region transcription start site region 120230
Gm47258 13 65289453 to 65290794 1341 + unclassified gene predicted gene, 47258
Cpgi5791 13 65310023 to 65310207 184 CpG island CpG island 5791
Cpgi5792 13 65311304 to 65311656 352 CpG island CpG island 5792
Gm3800 13 65313758 to 65314311 553 + pseudogene predicted gene 3800
Gm47263 13 65332907 to 65333113 206 - pseudogene predicted gene, 47263
Gm7762 13 65336862 to 65348585 11723 - lincRNA gene predicted gene 7762
Gm47264 13 65345127 to 65345282 155 + pseudogene predicted gene, 47264
Cpgi5793 13 65352300 to 65352537 237 CpG island CpG island 5793
Vmn2r-ps95 13 65353256 to 65364427 11171 - pseudogene vomeronasal 2, receptor, pseudogene 95
Gm7768 13 65368150 to 65368746 596 - pseudogene predicted gene 7768
Gm40983 13 65380329 to 65382097 1768 + lincRNA gene predicted gene, 40983
Gm40982 13 65381228 to 65381866 638 - lncRNA gene predicted gene, 40982
Gm48103 13 65396007 to 65396138 131 - pseudogene predicted gene, 48103
Gm31714 13 65396483 to 65415122 18639 - protein coding gene predicted gene, 31714
Gm21930 13 65396555 to 65397678 1123 - pseudogene predicted gene, 21930
Gm48111 13 65404296 to 65408136 3840 + pseudogene predicted gene, 48111
Cbx3-ps5 13 65416601 to 65417144 543 + pseudogene chromobox 3, pseudogene 5
Vmn2r-ps96 13 65421636 to 65435538 13902 - pseudogene vomeronasal 2, receptor, pseudogene 96
Hmgb1-ps11 13 65436524 to 65437144 620 - pseudogene high mobility group box 1, pseudogene 11
Gm40985 13 65461756 to 65469447 7691 + lncRNA gene predicted gene, 40985
Gm48136 13 65478385 to 65479292 907 - pseudogene predicted gene, 48136
Gm48165 13 65487439 to 65624203 136764 + pseudogene predicted gene, 48165
Gm48168 13 65491789 to 65496793 5004 - lincRNA gene predicted gene, 48168
Gm48166 13 65493490 to 65630774 137284 + lincRNA gene predicted gene, 48166
Gm10139 13 65512678 to 65512848 170 + protein coding gene predicted gene 10139
Gm48171 13 65514187 to 65514978 791 + pseudogene predicted gene, 48171
Gm48169 13 65518174 to 65518412 238 + pseudogene predicted gene, 48169
Gm48167 13 65541990 to 65542205 215 - pseudogene predicted gene, 48167
Tssr123077 13 65557690 to 65557709 19 - TSS region transcription start site region 123077
Cbx3-ps2 13 65559168 to 65559711 543 + pseudogene chromobox 3, pseudogene 2
Vmn2r-ps97 13 65564185 to 65575340 11155 - pseudogene vomeronasal 2, receptor, pseudogene 97
Gm3829 13 65579063 to 65579659 596 - pseudogene predicted gene 3829
Gm26639 13 65590293 to 65591561 1268 - lincRNA gene predicted gene, 26639
Gm48170 13 65615824 to 65620243 4419 - lincRNA gene predicted gene, 48170
Gm48164 13 65623404 to 65624052 648 + pseudogene predicted gene, 48164
Gm19448 13 65639768 to 65660118 20350 + lncRNA gene predicted gene, 19448
Gm48185 13 65649558 to 65650349 791 + pseudogene predicted gene, 48185
Gm48186 13 65653504 to 65653742 238 + pseudogene predicted gene, 48186
Gm19428 13 65689613 to 65713454 23841 - protein coding gene predicted gene, 19428
Gm19118 13 65697063 to 65697160 97 + pseudogene predicted gene, 19118
Cpgi5794 13 65726812 to 65726998 186 CpG island CpG island 5794
Vmn2r-ps98 13 65727774 to 65734119 6345 - pseudogene vomeronasal 2, receptor, pseudogene 98
Gm38428 13 65761849 to 65762695 846 - pseudogene predicted gene, 38428
Platr2 13 65780905 to 65867305 86400 + lincRNA gene pluripotency associated transcript 2
Gm40986 13 65849063 to 65863393 14330 - lncRNA gene predicted gene, 40986
Gm7822 13 65874239 to 65874819 580 + pseudogene predicted gene 7822
Vmn2r-ps99 13 65875884 to 65889731 13847 + pseudogene vomeronasal 2, receptor, pseudogene 99
Cbx3-ps1 13 65894215 to 65894759 544 - pseudogene chromobox 3, pseudogene 1
Tssr120231 13 65897157 to 65897171 14 + TSS region transcription start site region 120231
Gm17353 13 65897183 to 65907988 10805 + protein coding gene predicted gene, 17353
Gm48218 13 65908223 to 65908904 681 + pseudogene predicted gene, 48218
Gm48219 13 65912526 to 65912759 233 + pseudogene predicted gene, 48219
Gm32476 13 65935670 to 65950327 14657 - lncRNA gene predicted gene, 32476
Vmn2r-ps100 13 65944054 to 65948541 4487 + pseudogene vomeronasal 2, receptor, pseudogene 100