Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:64082689-64832872

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hsd17b3 13 64058266 to 64089230 30964 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 3
Tssr123000 13 64084484 to 64084491 7 - TSS region transcription start site region 123000
Tssr123001 13 64084635 to 64084644 9 - TSS region transcription start site region 123001
Tssr123002 13 64084819 to 64084829 10 - TSS region transcription start site region 123002
D13Mit224 13 64085712 to 64085828 116 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 224
Tssr123003 13 64089145 to 64089164 19 - TSS region transcription start site region 123003
Tssr123004 13 64089179 to 64089192 13 - TSS region transcription start site region 123004
Tssr123005 13 64089197 to 64089208 11 - TSS region transcription start site region 123005
Tssr123006 13 64089222 to 64089236 14 - TSS region transcription start site region 123006
Tssr123007 13 64089257 to 64089267 10 - TSS region transcription start site region 123007
Tssr123008 13 64089374 to 64089394 20 - TSS region transcription start site region 123008
Tssr123009 13 64089422 to 64089429 7 - TSS region transcription start site region 123009
Tssr123010 13 64089469 to 64089500 31 - TSS region transcription start site region 123010
Slc35d2 13 64096308 to 64129368 33060 - protein coding gene solute carrier family 35, member D2
Tssr123011 13 64107146 to 64107179 33 - TSS region transcription start site region 123011
Tssr123012 13 64107181 to 64107192 11 - TSS region transcription start site region 123012
Tssr123013 13 64128520 to 64128524 4 - TSS region transcription start site region 123013
Cpgi5772 13 64129140 to 64129428 288 CpG island CpG island 5772
Tssr123014 13 64129305 to 64129348 43 - TSS region transcription start site region 123014
Zfp367 13 64133025 to 64153199 20174 - protein coding gene zinc finger protein 367
Tssr123015 13 64133929 to 64133933 4 - TSS region transcription start site region 123015
Tssr123016 13 64150106 to 64150117 11 - TSS region transcription start site region 123016
Cpgi5773 13 64152133 to 64153667 1534 CpG island CpG island 5773
Tssr123017 13 64152410 to 64152455 45 - TSS region transcription start site region 123017
Gm47513 13 64152581 to 64154596 2015 + unclassified gene predicted gene, 47513
Tssr123018 13 64152706 to 64152748 42 - TSS region transcription start site region 123018
Tssr123019 13 64153129 to 64153145 16 - TSS region transcription start site region 123019
Tssr123020 13 64153149 to 64153189 40 - TSS region transcription start site region 123020
Tssr123021 13 64153194 to 64153207 13 - TSS region transcription start site region 123021
Tssr123022 13 64153264 to 64153277 13 - TSS region transcription start site region 123022
Tssr120196 13 64153709 to 64153720 11 + TSS region transcription start site region 120196
Cpgi5774 13 64154080 to 64154238 158 CpG island CpG island 5774
Tssr4108 13 64161465 to 64161470 5 + TSS region transcription start site region 4108
Cpgi5775 13 64161487 to 64163108 1621 CpG island CpG island 5775
Tssr120197 13 64161796 to 64161832 36 + TSS region transcription start site region 120197
Tssr120198 13 64161834 to 64161859 25 + TSS region transcription start site region 120198
Tssr120199 13 64161862 to 64161910 48 + TSS region transcription start site region 120199
Habp4 13 64161866 to 64186537 24671 + protein coding gene hyaluronic acid binding protein 4
Tssr120200 13 64161942 to 64161949 7 + TSS region transcription start site region 120200
Cpgi5776 13 64169795 to 64170165 370 CpG island CpG island 5776
Tssr120201 13 64183861 to 64183870 9 + TSS region transcription start site region 120201
Tssr120202 13 64183886 to 64183899 13 + TSS region transcription start site region 120202
Cdc14b 13 64192545 to 64274988 82443 - protein coding gene CDC14 cell division cycle 14B
Tssr120203 13 64204002 to 64204011 9 + TSS region transcription start site region 120203
Gm46424 13 64210523 to 64210690 167 + pseudogene predicted gene, 46424
Cpgi5777 13 64248394 to 64249115 721 CpG island CpG island 5777
Tssr123023 13 64248495 to 64248538 43 - TSS region transcription start site region 123023
Tssr123024 13 64248623 to 64248648 25 - TSS region transcription start site region 123024
Tssr120204 13 64248649 to 64248675 26 + TSS region transcription start site region 120204
1810034E14Rik 13 64248700 to 64268145 19445 + antisense lncRNA gene RIKEN cDNA 1810034E14 gene
D13Ertd666e 13 64258899 to 64259103 204 DNA segment DNA segment, Chr 13, ERATO Doi 666, expressed
Gm47004 13 64262114 to 64264374 2260 + unclassified gene predicted gene, 47004
Tssr123025 13 64272619 to 64272623 4 - TSS region transcription start site region 123025
Cpgi5778 13 64273928 to 64275701 1773 CpG island CpG island 5778
Tssr123026 13 64274922 to 64274947 25 - TSS region transcription start site region 123026
Tssr123027 13 64274950 to 64274959 9 - TSS region transcription start site region 123027
Tssr123028 13 64274962 to 64275004 42 - TSS region transcription start site region 123028
Tssr123029 13 64275031 to 64275042 11 - TSS region transcription start site region 123029
Tssr120205 13 64275120 to 64275131 11 + TSS region transcription start site region 120205
Tssr120206 13 64276258 to 64276262 4 + TSS region transcription start site region 120206
Tssr123030 13 64289156 to 64289158 2 - TSS region transcription start site region 123030
Gm47003 13 64291077 to 64298039 6962 + antisense lncRNA gene predicted gene, 47003
Prxl2c 13 64291836 to 64312710 20874 - protein coding gene peroxiredoxin like 2C
Gm25654 13 64296437 to 64296524 87 - snRNA gene predicted gene, 25654
D13Dcr11 13 64299118 to 64299213 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 11
Tssr123031 13 64307064 to 64307068 4 - TSS region transcription start site region 123031
Cpgi5779 13 64312120 to 64312964 844 CpG island CpG island 5779
Tssr123032 13 64312568 to 64312623 55 - TSS region transcription start site region 123032
Tssr123033 13 64312628 to 64312654 26 - TSS region transcription start site region 123033
Tssr123034 13 64312676 to 64312746 70 - TSS region transcription start site region 123034
Gm31128 13 64316550 to 64343787 27237 - lncRNA gene predicted gene, 31128
Tssr123035 13 64320386 to 64320391 5 - TSS region transcription start site region 123035
Gm47123 13 64361052 to 64363022 1970 + antisense lncRNA gene predicted gene, 47123
Gm49230 13 64361343 to 64361737 394 - pseudogene predicted gene, 49230
Ctsl 13 64361890 to 64370748 8858 - protein coding gene cathepsin L
Tssr123036 13 64363000 to 64363003 3 - TSS region transcription start site region 123036
Tssr123037 13 64363688 to 64363699 11 - TSS region transcription start site region 123037
Tssr123038 13 64363748 to 64363759 11 - TSS region transcription start site region 123038
Tssr120207 13 64363795 to 64363805 10 + TSS region transcription start site region 120207
Tssr123039 13 64363851 to 64363862 11 - TSS region transcription start site region 123039
Tssr123040 13 64363936 to 64364054 118 - TSS region transcription start site region 123040
Tssr123041 13 64364056 to 64364138 82 - TSS region transcription start site region 123041
Tssr123042 13 64364141 to 64364195 54 - TSS region transcription start site region 123042
Tssr120208 13 64364163 to 64364175 12 + TSS region transcription start site region 120208
Tssr123043 13 64365233 to 64365240 7 - TSS region transcription start site region 123043
Tssr123044 13 64365253 to 64365331 78 - TSS region transcription start site region 123044
Tssr120209 13 64365281 to 64365295 14 + TSS region transcription start site region 120209
Tssr123045 13 64366162 to 64366188 26 - TSS region transcription start site region 123045
Tssr123046 13 64366508 to 64366596 88 - TSS region transcription start site region 123046
Tssr123047 13 64366600 to 64366652 52 - TSS region transcription start site region 123047
Tssr123048 13 64366897 to 64366937 40 - TSS region transcription start site region 123048
Tssr123049 13 64366939 to 64367095 156 - TSS region transcription start site region 123049
Tssr120210 13 64367026 to 64367073 47 + TSS region transcription start site region 120210
Tssr120211 13 64367882 to 64367899 17 + TSS region transcription start site region 120211
Tssr123050 13 64367882 to 64367951 69 - TSS region transcription start site region 123050
Tssr120212 13 64367966 to 64367982 16 + TSS region transcription start site region 120212
Tssr123051 13 64367972 to 64368021 49 - TSS region transcription start site region 123051
Tssr120213 13 64368126 to 64368208 82 + TSS region transcription start site region 120213
Tssr123052 13 64368149 to 64368227 78 - TSS region transcription start site region 123052
Tssr123053 13 64368233 to 64368244 11 - TSS region transcription start site region 123053
Tssr123054 13 64368756 to 64368768 12 - TSS region transcription start site region 123054
Tssr123055 13 64368819 to 64368831 12 - TSS region transcription start site region 123055
Tssr123056 13 64369016 to 64369029 13 - TSS region transcription start site region 123056
Tssr123057 13 64369050 to 64369179 129 - TSS region transcription start site region 123057
Cpgi5780 13 64369709 to 64370562 853 CpG island CpG island 5780
Tssr123058 13 64370298 to 64370315 17 - TSS region transcription start site region 123058
Tssr123059 13 64370345 to 64370362 17 - TSS region transcription start site region 123059
Tssr120214 13 64370442 to 64370464 22 + TSS region transcription start site region 120214
Tssr123060 13 64408850 to 64408853 3 - TSS region transcription start site region 123060
Tssr120215 13 64410777 to 64410781 4 + TSS region transcription start site region 120215
Tssr123061 13 64413379 to 64413409 30 - TSS region transcription start site region 123061
Tssr123062 13 64421657 to 64421674 17 - TSS region transcription start site region 123062
Tssr120216 13 64422431 to 64422440 9 + TSS region transcription start site region 120216
1700015C15Rik 13 64427956 to 64432436 4480 - antisense lncRNA gene RIKEN cDNA 1700015C15 gene
Cpgi5781 13 64432222 to 64433163 941 CpG island CpG island 5781
Cdk20 13 64432319 to 64439722 7403 + protein coding gene cyclin-dependent kinase 20
Tssr120217 13 64432347 to 64432419 72 + TSS region transcription start site region 120217
Tssr123063 13 64432462 to 64432495 33 - TSS region transcription start site region 123063
Tssr120218 13 64432479 to 64432557 78 + TSS region transcription start site region 120218
Tssr120219 13 64432595 to 64432609 14 + TSS region transcription start site region 120219
Tssr120220 13 64432763 to 64432779 16 + TSS region transcription start site region 120220
Gm31218 13 64449477 to 64508402 58925 + lincRNA gene predicted gene, 31218
Gm7712 13 64457412 to 64458788 1376 - pseudogene predicted gene 7712
Cpgi5782 13 64457689 to 64457872 183 CpG island CpG island 5782
Cpgi5783 13 64458838 to 64459021 183 CpG island CpG island 5783
Fam240b 13 64481246 to 64497792 16546 - protein coding gene family with sequence similarity 240 member B
Gm4810 13 64509490 to 64511096 1606 + pseudogene predicted gene 4810
Tssr120221 13 64510264 to 64510277 13 + TSS region transcription start site region 120221
Gm47190 13 64515443 to 64515854 411 - pseudogene predicted gene, 47190
Gm47191 13 64611860 to 64619498 7638 + pseudogene predicted gene, 47191
Gm47193 13 64619550 to 64625002 5452 + lincRNA gene predicted gene, 47193
Gm5791 13 64624272 to 64624760 488 - pseudogene predicted gene 5791
Tssr123064 13 64624782 to 64624807 25 - TSS region transcription start site region 123064
Gm4935 13 64673863 to 64675060 1197 + pseudogene predicted gene 4935
Gm47194 13 64674539 to 64685275 10736 - lincRNA gene predicted gene, 47194
Tssr120222 13 64687632 to 64687636 4 + TSS region transcription start site region 120222
Gm7065 13 64703158 to 64703631 473 + pseudogene predicted gene 7065
Cntnap3 13 64737591 to 64904029 166438 - protein coding gene contactin associated protein-like 3