Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:63844197-64334208

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ercc6l2 13 63815240 to 63900302 85062 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2
Gm47424 13 63861082 to 63862291 1209 + sense intronic lncRNA gene predicted gene, 47424
Gm46423 13 63900364 to 63908682 8318 - lncRNA gene predicted gene, 46423
Cpgi5770 13 63901219 to 63902178 959 CpG island CpG island 5770
Gm30950 13 63927755 to 63938637 10882 + lncRNA gene predicted gene, 30950
D13Ertd297e 13 63943147 to 63943360 213 DNA segment DNA segment, Chr 13, ERATO Doi 297, expressed
Gm7695 13 63945881 to 63946521 640 - pseudogene predicted gene 7695
Cpgi5771 13 63946332 to 63946545 213 CpG island CpG island 5771
Tssr4105 13 63946542 to 63946552 10 - TSS region transcription start site region 4105
Tssr122992 13 63968696 to 63968736 40 - TSS region transcription start site region 122992
D13Mit253 13 63999903 to 63999979 76 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 253
Gm30999 13 64056253 to 64057242 989 + lncRNA gene predicted gene, 30999
Hsd17b3 13 64058266 to 64089230 30964 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 3
Tssr122993 13 64059811 to 64059815 4 - TSS region transcription start site region 122993
Tssr4106 13 64066065 to 64066081 16 - TSS region transcription start site region 4106
Tssr4107 13 64066084 to 64066091 7 - TSS region transcription start site region 4107
Tssr122994 13 64066113 to 64066118 5 - TSS region transcription start site region 122994
Tssr122995 13 64066127 to 64066138 11 - TSS region transcription start site region 122995
Tssr122996 13 64066141 to 64066146 5 - TSS region transcription start site region 122996
Tssr122997 13 64066178 to 64066201 23 - TSS region transcription start site region 122997
Tssr122998 13 64066284 to 64066287 3 - TSS region transcription start site region 122998
Tssr122999 13 64076598 to 64076617 19 - TSS region transcription start site region 122999
Tssr123000 13 64084484 to 64084491 7 - TSS region transcription start site region 123000
Tssr123001 13 64084635 to 64084644 9 - TSS region transcription start site region 123001
Tssr123002 13 64084819 to 64084829 10 - TSS region transcription start site region 123002
D13Mit224 13 64085712 to 64085828 116 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 224
Tssr123003 13 64089145 to 64089164 19 - TSS region transcription start site region 123003
Tssr123004 13 64089179 to 64089192 13 - TSS region transcription start site region 123004
Tssr123005 13 64089197 to 64089208 11 - TSS region transcription start site region 123005
Tssr123006 13 64089222 to 64089236 14 - TSS region transcription start site region 123006
Tssr123007 13 64089257 to 64089267 10 - TSS region transcription start site region 123007
Tssr123008 13 64089374 to 64089394 20 - TSS region transcription start site region 123008
Tssr123009 13 64089422 to 64089429 7 - TSS region transcription start site region 123009
Tssr123010 13 64089469 to 64089500 31 - TSS region transcription start site region 123010
Slc35d2 13 64096308 to 64129368 33060 - protein coding gene solute carrier family 35, member D2
Tssr123011 13 64107146 to 64107179 33 - TSS region transcription start site region 123011
Tssr123012 13 64107181 to 64107192 11 - TSS region transcription start site region 123012
Tssr123013 13 64128520 to 64128524 4 - TSS region transcription start site region 123013
Cpgi5772 13 64129140 to 64129428 288 CpG island CpG island 5772
Tssr123014 13 64129305 to 64129348 43 - TSS region transcription start site region 123014
Zfp367 13 64133025 to 64153199 20174 - protein coding gene zinc finger protein 367
Tssr123015 13 64133929 to 64133933 4 - TSS region transcription start site region 123015
Tssr123016 13 64150106 to 64150117 11 - TSS region transcription start site region 123016
Cpgi5773 13 64152133 to 64153667 1534 CpG island CpG island 5773
Tssr123017 13 64152410 to 64152455 45 - TSS region transcription start site region 123017
Gm47513 13 64152581 to 64154596 2015 + unclassified gene predicted gene, 47513
Tssr123018 13 64152706 to 64152748 42 - TSS region transcription start site region 123018
Tssr123019 13 64153129 to 64153145 16 - TSS region transcription start site region 123019
Tssr123020 13 64153149 to 64153189 40 - TSS region transcription start site region 123020
Tssr123021 13 64153194 to 64153207 13 - TSS region transcription start site region 123021
Tssr123022 13 64153264 to 64153277 13 - TSS region transcription start site region 123022
Tssr120196 13 64153709 to 64153720 11 + TSS region transcription start site region 120196
Cpgi5774 13 64154080 to 64154238 158 CpG island CpG island 5774
Tssr4108 13 64161465 to 64161470 5 + TSS region transcription start site region 4108
Cpgi5775 13 64161487 to 64163108 1621 CpG island CpG island 5775
Tssr120197 13 64161796 to 64161832 36 + TSS region transcription start site region 120197
Tssr120198 13 64161834 to 64161859 25 + TSS region transcription start site region 120198
Tssr120199 13 64161862 to 64161910 48 + TSS region transcription start site region 120199
Habp4 13 64161866 to 64186537 24671 + protein coding gene hyaluronic acid binding protein 4
Tssr120200 13 64161942 to 64161949 7 + TSS region transcription start site region 120200
Cpgi5776 13 64169795 to 64170165 370 CpG island CpG island 5776
Tssr120201 13 64183861 to 64183870 9 + TSS region transcription start site region 120201
Tssr120202 13 64183886 to 64183899 13 + TSS region transcription start site region 120202
Cdc14b 13 64192545 to 64274988 82443 - protein coding gene CDC14 cell division cycle 14B
Tssr120203 13 64204002 to 64204011 9 + TSS region transcription start site region 120203
Gm46424 13 64210523 to 64210690 167 + pseudogene predicted gene, 46424
Cpgi5777 13 64248394 to 64249115 721 CpG island CpG island 5777
Tssr123023 13 64248495 to 64248538 43 - TSS region transcription start site region 123023
Tssr123024 13 64248623 to 64248648 25 - TSS region transcription start site region 123024
Tssr120204 13 64248649 to 64248675 26 + TSS region transcription start site region 120204
1810034E14Rik 13 64248700 to 64268145 19445 + antisense lncRNA gene RIKEN cDNA 1810034E14 gene
D13Ertd666e 13 64258899 to 64259103 204 DNA segment DNA segment, Chr 13, ERATO Doi 666, expressed
Gm47004 13 64262114 to 64264374 2260 + unclassified gene predicted gene, 47004
Tssr123025 13 64272619 to 64272623 4 - TSS region transcription start site region 123025
Cpgi5778 13 64273928 to 64275701 1773 CpG island CpG island 5778
Tssr123026 13 64274922 to 64274947 25 - TSS region transcription start site region 123026
Tssr123027 13 64274950 to 64274959 9 - TSS region transcription start site region 123027
Tssr123028 13 64274962 to 64275004 42 - TSS region transcription start site region 123028
Tssr123029 13 64275031 to 64275042 11 - TSS region transcription start site region 123029
Tssr120205 13 64275120 to 64275131 11 + TSS region transcription start site region 120205
Tssr120206 13 64276258 to 64276262 4 + TSS region transcription start site region 120206
Tssr123030 13 64289156 to 64289158 2 - TSS region transcription start site region 123030
Gm47003 13 64291077 to 64298039 6962 + antisense lncRNA gene predicted gene, 47003
Prxl2c 13 64291836 to 64312710 20874 - protein coding gene peroxiredoxin like 2C
Gm25654 13 64296437 to 64296524 87 - snRNA gene predicted gene, 25654
D13Dcr11 13 64299118 to 64299213 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 11
Tssr123031 13 64307064 to 64307068 4 - TSS region transcription start site region 123031
Cpgi5779 13 64312120 to 64312964 844 CpG island CpG island 5779
Tssr123032 13 64312568 to 64312623 55 - TSS region transcription start site region 123032
Tssr123033 13 64312628 to 64312654 26 - TSS region transcription start site region 123033
Tssr123034 13 64312676 to 64312746 70 - TSS region transcription start site region 123034
Gm31128 13 64316550 to 64343787 27237 - lncRNA gene predicted gene, 31128
Tssr123035 13 64320386 to 64320391 5 - TSS region transcription start site region 123035