Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:63273993-64024113

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aopep 13 62964893 to 63326096 361203 + protein coding gene aminopeptidase O
Gm47585 13 63273600 to 63275911 2311 + unclassified gene predicted gene, 47585
Tssr120188 13 63274399 to 63274402 3 + TSS region transcription start site region 120188
Gm47602 13 63276905 to 63279224 2319 - unclassified gene predicted gene, 47602
Tssr120189 13 63278906 to 63278919 13 + TSS region transcription start site region 120189
Tssr120190 13 63279012 to 63279025 13 + TSS region transcription start site region 120190
Tssr120191 13 63279111 to 63279137 26 + TSS region transcription start site region 120191
Tssr122970 13 63288501 to 63288506 5 - TSS region transcription start site region 122970
Gm16907 13 63289601 to 63297147 7546 - lincRNA gene predicted gene, 16907
Tssr120192 13 63293159 to 63293166 7 + TSS region transcription start site region 120192
D13Mit283 13 63297367 to 63297479 112 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 283
Mir23b 13 63300484 to 63300557 73 + miRNA gene microRNA 23b
Mirc22 13 63300484 to 63301275 791 complex/cluster/region microRNA cluster 22, including Mir23b through Mir24-1
Mir27b 13 63300712 to 63300784 72 + miRNA gene microRNA 27b
Mir3074-1 13 63301199 to 63301283 84 - miRNA gene microRNA 3074-1
Mir24-1 13 63301208 to 63301275 67 + miRNA gene microRNA 24-1
Tssr120193 13 63301270 to 63301276 6 + TSS region transcription start site region 120193
Fancc 13 63304705 to 63497294 192589 - protein coding gene Fanconi anemia, complementation group C
Tssr122971 13 63323518 to 63323525 7 - TSS region transcription start site region 122971
Tssr122972 13 63325017 to 63325021 4 - TSS region transcription start site region 122972
Gm16133 13 63329556 to 63339961 10405 + antisense lncRNA gene predicted gene 16133
Gm16132 13 63376761 to 63381045 4284 - sense intronic lncRNA gene predicted gene 16132
Tssr122973 13 63398252 to 63398261 9 - TSS region transcription start site region 122973
Tssr122974 13 63398281 to 63398299 18 - TSS region transcription start site region 122974
Gm47588 13 63410918 to 63414767 3849 - unclassified gene predicted gene, 47588
Cpgi5764 13 63430898 to 63431978 1080 CpG island CpG island 5764
Tssr122975 13 63431587 to 63431617 30 - TSS region transcription start site region 122975
Tssr122976 13 63431698 to 63431733 35 - TSS region transcription start site region 122976
Tssr122977 13 63431737 to 63431755 18 - TSS region transcription start site region 122977
Gm16134 13 63446930 to 63447265 335 - pseudogene predicted gene 16134
Cpgi5765 13 63497076 to 63497304 228 CpG island CpG island 5765
Ptch1 13 63508328 to 63573598 65270 - protein coding gene patched 1
D13Mit123 13 63527597 to 63527742 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 123
Tssr122978 13 63533584 to 63533605 21 - TSS region transcription start site region 122978
Tssr122979 13 63539338 to 63539352 14 - TSS region transcription start site region 122979
Tssr122980 13 63540323 to 63540329 6 - TSS region transcription start site region 122980
Tssr122981 13 63553321 to 63553325 4 - TSS region transcription start site region 122981
Tssr122982 13 63563067 to 63563084 17 - TSS region transcription start site region 122982
Cpgi5766 13 63563070 to 63566672 3602 CpG island CpG island 5766
Tssr122983 13 63563087 to 63563131 44 - TSS region transcription start site region 122983
Tssr120194 13 63563397 to 63563402 5 + TSS region transcription start site region 120194
Tssr122984 13 63564730 to 63564772 42 - TSS region transcription start site region 122984
Tssr122985 13 63566157 to 63566182 25 - TSS region transcription start site region 122985
Tssr122986 13 63566187 to 63566224 37 - TSS region transcription start site region 122986
Tssr122987 13 63566249 to 63566278 29 - TSS region transcription start site region 122987
A930032L01Rik 13 63567098 to 63568054 956 - unclassified gene RIKEN cDNA A930032L01 gene
Cpgi5767 13 63567660 to 63568475 815 CpG island CpG island 5767
Cpgi5768 13 63572280 to 63573877 1597 CpG island CpG island 5768
Tssr122988 13 63573142 to 63573146 4 - TSS region transcription start site region 122988
Tssr122989 13 63573400 to 63573430 30 - TSS region transcription start site region 122989
Gm30655 13 63575051 to 63582562 7511 + lincRNA gene predicted gene, 30655
Gm30709 13 63621599 to 63627360 5761 - lincRNA gene predicted gene, 30709
D13Mit311 13 63648993 to 63649113 120 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 311
Gm47387 13 63661797 to 63662161 364 + pseudogene predicted gene, 47387
1700024I08Rik 13 63675756 to 63734298 58542 - lincRNA gene RIKEN cDNA 1700024I08 gene
Tssr122990 13 63701930 to 63701966 36 - TSS region transcription start site region 122990
Gm47390 13 63730149 to 63734599 4450 + lincRNA gene predicted gene, 47390
Gm47417 13 63748751 to 63749268 517 + pseudogene predicted gene, 47417
Gm47418 13 63794106 to 63795428 1322 + lincRNA gene predicted gene, 47418
C030010C08Rik 13 63813310 to 63815559 2249 unclassified gene RIKEN cDNA C030010C08 gene
Cpgi5769 13 63814761 to 63815755 994 CpG island CpG island 5769
Tssr122991 13 63815115 to 63815165 50 - TSS region transcription start site region 122991
Ercc6l2 13 63815240 to 63900302 85062 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2
Tssr120195 13 63815290 to 63815379 89 + TSS region transcription start site region 120195
Gm47424 13 63861082 to 63862291 1209 + sense intronic lncRNA gene predicted gene, 47424
Gm46423 13 63900364 to 63908682 8318 - lncRNA gene predicted gene, 46423
Cpgi5770 13 63901219 to 63902178 959 CpG island CpG island 5770
Gm30950 13 63927755 to 63938637 10882 + lncRNA gene predicted gene, 30950
D13Ertd297e 13 63943147 to 63943360 213 DNA segment DNA segment, Chr 13, ERATO Doi 297, expressed
Gm7695 13 63945881 to 63946521 640 - pseudogene predicted gene 7695
Cpgi5771 13 63946332 to 63946545 213 CpG island CpG island 5771
Tssr4105 13 63946542 to 63946552 10 - TSS region transcription start site region 4105
Tssr122992 13 63968696 to 63968736 40 - TSS region transcription start site region 122992
D13Mit253 13 63999903 to 63999979 76 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 253