Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:63233328-63848460

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aopep 13 62964893 to 63326096 361203 + protein coding gene aminopeptidase O
Tssr120172 13 63239551 to 63239576 25 + TSS region transcription start site region 120172
Cpgi5763 13 63239556 to 63240554 998 CpG island CpG island 5763
Tssr120173 13 63240013 to 63240051 38 + TSS region transcription start site region 120173
Tssr120174 13 63240056 to 63240093 37 + TSS region transcription start site region 120174
Tssr120175 13 63240386 to 63240400 14 + TSS region transcription start site region 120175
Tssr120176 13 63240545 to 63240567 22 + TSS region transcription start site region 120176
Tssr120177 13 63241037 to 63241040 3 + TSS region transcription start site region 120177
Gm47586 13 63244221 to 63246248 2027 + unclassified gene predicted gene, 47586
Tssr122968 13 63246246 to 63246250 4 - TSS region transcription start site region 122968
Tssr120178 13 63246838 to 63246847 9 + TSS region transcription start site region 120178
Tssr120179 13 63246875 to 63246880 5 + TSS region transcription start site region 120179
Tssr120180 13 63251378 to 63251392 14 + TSS region transcription start site region 120180
Tssr120181 13 63251724 to 63251750 26 + TSS region transcription start site region 120181
Tssr120182 13 63252604 to 63252609 5 + TSS region transcription start site region 120182
Gm47603 13 63253024 to 63255564 2540 - unclassified gene predicted gene, 47603
Tssr4104 13 63256763 to 63256773 10 + TSS region transcription start site region 4104
Tssr120183 13 63271451 to 63271457 6 + TSS region transcription start site region 120183
Tssr120184 13 63272596 to 63272600 4 + TSS region transcription start site region 120184
Tssr122969 13 63272657 to 63272664 7 - TSS region transcription start site region 122969
Tssr120185 13 63272793 to 63272808 15 + TSS region transcription start site region 120185
Tssr120186 13 63272987 to 63273005 18 + TSS region transcription start site region 120186
Gm47585 13 63273600 to 63275911 2311 + unclassified gene predicted gene, 47585
Tssr120187 13 63273615 to 63273618 3 + TSS region transcription start site region 120187
Tssr120188 13 63274399 to 63274402 3 + TSS region transcription start site region 120188
Gm47602 13 63276905 to 63279224 2319 - unclassified gene predicted gene, 47602
Tssr120189 13 63278906 to 63278919 13 + TSS region transcription start site region 120189
Tssr120190 13 63279012 to 63279025 13 + TSS region transcription start site region 120190
Tssr120191 13 63279111 to 63279137 26 + TSS region transcription start site region 120191
Tssr122970 13 63288501 to 63288506 5 - TSS region transcription start site region 122970
Gm16907 13 63289601 to 63297147 7546 - lincRNA gene predicted gene, 16907
Tssr120192 13 63293159 to 63293166 7 + TSS region transcription start site region 120192
D13Mit283 13 63297367 to 63297479 112 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 283
Mirc22 13 63300484 to 63301275 791 complex/cluster/region microRNA cluster 22, including Mir23b through Mir24-1
Mir23b 13 63300484 to 63300557 73 + miRNA gene microRNA 23b
Mir27b 13 63300712 to 63300784 72 + miRNA gene microRNA 27b
Mir3074-1 13 63301199 to 63301283 84 - miRNA gene microRNA 3074-1
Mir24-1 13 63301208 to 63301275 67 + miRNA gene microRNA 24-1
Tssr120193 13 63301270 to 63301276 6 + TSS region transcription start site region 120193
Fancc 13 63304705 to 63497294 192589 - protein coding gene Fanconi anemia, complementation group C
Tssr122971 13 63323518 to 63323525 7 - TSS region transcription start site region 122971
Tssr122972 13 63325017 to 63325021 4 - TSS region transcription start site region 122972
Gm16133 13 63329556 to 63339961 10405 + antisense lncRNA gene predicted gene 16133
Gm16132 13 63376761 to 63381045 4284 - sense intronic lncRNA gene predicted gene 16132
Tssr122973 13 63398252 to 63398261 9 - TSS region transcription start site region 122973
Tssr122974 13 63398281 to 63398299 18 - TSS region transcription start site region 122974
Gm47588 13 63410918 to 63414767 3849 - unclassified gene predicted gene, 47588
Cpgi5764 13 63430898 to 63431978 1080 CpG island CpG island 5764
Tssr122975 13 63431587 to 63431617 30 - TSS region transcription start site region 122975
Tssr122976 13 63431698 to 63431733 35 - TSS region transcription start site region 122976
Tssr122977 13 63431737 to 63431755 18 - TSS region transcription start site region 122977
Gm16134 13 63446930 to 63447265 335 - pseudogene predicted gene 16134
Cpgi5765 13 63497076 to 63497304 228 CpG island CpG island 5765
Ptch1 13 63508328 to 63573598 65270 - protein coding gene patched 1
D13Mit123 13 63527597 to 63527742 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 123
Tssr122978 13 63533584 to 63533605 21 - TSS region transcription start site region 122978
Tssr122979 13 63539338 to 63539352 14 - TSS region transcription start site region 122979
Tssr122980 13 63540323 to 63540329 6 - TSS region transcription start site region 122980
Tssr122981 13 63553321 to 63553325 4 - TSS region transcription start site region 122981
Tssr122982 13 63563067 to 63563084 17 - TSS region transcription start site region 122982
Cpgi5766 13 63563070 to 63566672 3602 CpG island CpG island 5766
Tssr122983 13 63563087 to 63563131 44 - TSS region transcription start site region 122983
Tssr120194 13 63563397 to 63563402 5 + TSS region transcription start site region 120194
Tssr122984 13 63564730 to 63564772 42 - TSS region transcription start site region 122984
Tssr122985 13 63566157 to 63566182 25 - TSS region transcription start site region 122985
Tssr122986 13 63566187 to 63566224 37 - TSS region transcription start site region 122986
Tssr122987 13 63566249 to 63566278 29 - TSS region transcription start site region 122987
A930032L01Rik 13 63567098 to 63568054 956 - unclassified gene RIKEN cDNA A930032L01 gene
Cpgi5767 13 63567660 to 63568475 815 CpG island CpG island 5767
Cpgi5768 13 63572280 to 63573877 1597 CpG island CpG island 5768
Tssr122988 13 63573142 to 63573146 4 - TSS region transcription start site region 122988
Tssr122989 13 63573400 to 63573430 30 - TSS region transcription start site region 122989
Gm30655 13 63575051 to 63582562 7511 + lincRNA gene predicted gene, 30655
Gm30709 13 63621599 to 63627360 5761 - lincRNA gene predicted gene, 30709
D13Mit311 13 63648993 to 63649113 120 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 311
Gm47387 13 63661797 to 63662161 364 + pseudogene predicted gene, 47387
1700024I08Rik 13 63675756 to 63734298 58542 - lincRNA gene RIKEN cDNA 1700024I08 gene
Tssr122990 13 63701930 to 63701966 36 - TSS region transcription start site region 122990
Gm47390 13 63730149 to 63734599 4450 + lincRNA gene predicted gene, 47390
Gm47417 13 63748751 to 63749268 517 + pseudogene predicted gene, 47417
Gm47418 13 63794106 to 63795428 1322 + lincRNA gene predicted gene, 47418
C030010C08Rik 13 63813310 to 63815559 2249 unclassified gene RIKEN cDNA C030010C08 gene
Cpgi5769 13 63814761 to 63815755 994 CpG island CpG island 5769
Tssr122991 13 63815115 to 63815165 50 - TSS region transcription start site region 122991
Ercc6l2 13 63815240 to 63900302 85062 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2
Tssr120195 13 63815290 to 63815379 89 + TSS region transcription start site region 120195