Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:61483889-64643891

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373 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctsm-ps2 13 61482408 to 61490329 7921 - pseudogene cathepsin M, pseudogene 2
Gm47848 13 61510288 to 61511518 1230 + pseudogene predicted gene, 47848
Gm7756 13 61531840 to 61532673 833 - pseudogene predicted gene 7756
Ctsm 13 61535743 to 61541839 6096 - protein coding gene cathepsin M
Gm49352 13 61538390 to 61568174 29784 - protein coding gene predicted gene, 49352
Tssr122948 13 61541828 to 61541842 14 - TSS region transcription start site region 122948
Tssr122949 13 61541892 to 61541900 8 - TSS region transcription start site region 122949
Cts3 13 61564630 to 61570127 5497 - protein coding gene cathepsin 3
Tssr122950 13 61567914 to 61567920 6 - TSS region transcription start site region 122950
Tssr122951 13 61570097 to 61570109 12 - TSS region transcription start site region 122951
Tssr122952 13 61570111 to 61570135 24 - TSS region transcription start site region 122952
Gm21933 13 61630023 to 61636282 6259 + protein coding gene predicted gene, 21933
Gm49357 13 61655303 to 61743770 88467 + lincRNA gene predicted gene, 49357
Gm20599 13 61655310 to 61700833 45523 + pseudogene predicted gene, 20599
Cpgi5755 13 61665811 to 61666207 396 CpG island CpG island 5755
Gm7622 13 61665941 to 61667140 1199 + pseudogene predicted pseudogene 7622
Gm6474 13 61687282 to 61687980 698 - pseudogene predicted gene 6474
Gm48116 13 61709556 to 61711238 1682 + lincRNA gene predicted gene, 48116
Gm6436 13 61710587 to 61711371 784 - pseudogene predicted gene 6436
Tssr120155 13 61712975 to 61712998 23 + TSS region transcription start site region 120155
Gm9595 13 61723588 to 61724331 743 + pseudogene predicted gene 9595
BC052688 13 61771580 to 61787282 15702 + pseudogene cDNA sequence BC052688
Selenok-ps4 13 61799903 to 61800179 276 + pseudogene selenoprotein K, pseudogene 4
Gm23739 13 61804141 to 61804248 107 - miRNA gene predicted gene, 23739
Gm7240 13 61804257 to 61861675 57418 + pseudogene predicted gene 7240
Tssr4099 13 61804272 to 61804308 36 + TSS region transcription start site region 4099
Gm24193 13 61823544 to 61823664 120 - miRNA gene predicted gene, 24193
Tssr120156 13 61827502 to 61827505 3 + TSS region transcription start site region 120156
Gm35619 13 61917549 to 61918148 599 + pseudogene predicted gene, 35619
Gm21935 13 61984004 to 61993289 9285 + pseudogene predicted gene, 21935
Tssr120157 13 61995287 to 61995297 10 + TSS region transcription start site region 120157
Tssr122953 13 61999542 to 61999545 3 - TSS region transcription start site region 122953
Gm48228 13 62006640 to 62126102 119462 - lincRNA gene predicted gene, 48228
Selenok-ps8 13 62006668 to 62006947 279 + pseudogene selenoprotein K, pseudogene 8
Gm25649 13 62013035 to 62013144 109 - miRNA gene predicted gene, 25649
Gm3325 13 62015605 to 62050986 35381 + protein coding gene predicted gene 3325
Tssr120158 13 62015918 to 62015960 42 + TSS region transcription start site region 120158
Cpgi5756 13 62015949 to 62016170 221 CpG island CpG island 5756
Gm6478 13 62035422 to 62036163 741 + pseudogene predicted pseudogene 6478
Gm40977 13 62102690 to 62112031 9341 + pseudogene predicted gene, 40977
Selenok-ps5 13 62125729 to 62126006 277 + pseudogene selenoprotein K, pseudogene 5
Zfp808 13 62129890 to 62173938 44048 + protein coding gene zinc finger protein 808
Tssr120159 13 62129894 to 62129923 29 + TSS region transcription start site region 120159
Gm23713 13 62136762 to 62136831 69 + snoRNA gene predicted gene, 23713
Gm24539 13 62136930 to 62137062 132 + snoRNA gene predicted gene, 24539
Gm36501 13 62151170 to 62151914 744 + pseudogene predicted gene, 36501
Gm7640 13 62199609 to 62200482 873 - pseudogene predicted gene 7640
Gm17352 13 62217501 to 62217986 485 - pseudogene predicted gene, 17352
2810408B13Rik 13 62232674 to 62237254 4580 + unclassified non-coding RNA gene RIKEN cDNA 2810408B13 gene
Tssr120160 13 62263575 to 62263612 37 + TSS region transcription start site region 120160
Tssr120161 13 62263613 to 62263624 11 + TSS region transcription start site region 120161
Gm3333 13 62273747 to 62275241 1494 + pseudogene predicted gene 3333
Gm3338 13 62322396 to 62322664 268 + pseudogene predicted gene 3338
Gm19792 13 62336463 to 62340727 4264 - pseudogene predicted gene, 19792
Gm3604 13 62368328 to 62383177 14849 - protein coding gene predicted gene 3604
Gm25933 13 62383237 to 62383344 107 + miRNA gene predicted gene, 25933
Gm23855 13 62384918 to 62385052 134 + snoRNA gene predicted gene, 23855
Gm48690 13 62385104 to 62385416 312 + pseudogene predicted gene, 48690
Selenok-ps6 13 62387651 to 62387933 282 - pseudogene selenoprotein K, pseudogene 6
Gm48691 13 62402493 to 62417043 14550 - pseudogene predicted gene, 48691
Gm48699 13 62432866 to 62434390 1524 - unclassified gene predicted gene, 48699
Gm48701 13 62449317 to 62451609 2292 - unclassified gene predicted gene, 48701
Zfp935 13 62453016 to 62466812 13796 - protein coding gene zinc finger protein 935
Gm49359 13 62453016 to 62466832 13816 - protein coding gene predicted gene, 49359
Cpgi5757 13 62466640 to 62466864 224 CpG island CpG island 5757
Tssr122954 13 62466794 to 62466839 45 - TSS region transcription start site region 122954
Gm22256 13 62466865 to 62466971 106 + miRNA gene predicted gene, 22256
Gm21145 13 62486263 to 62498749 12486 - lncRNA gene predicted gene, 21145
Zfp934 13 62516795 to 62579320 62525 - protein coding gene zinc finger protein 934
Gm7664 13 62528216 to 62528960 744 - pseudogene predicted gene 7664
Gm24095 13 62543203 to 62543335 132 - snoRNA gene predicted gene, 24095
Gm22615 13 62543434 to 62543503 69 - snoRNA gene predicted gene, 22615
Gm38639 13 62552641 to 62555638 2997 - lncRNA gene predicted gene, 38639
6720489N17Rik 13 62603013 to 62624182 21169 - protein coding gene RIKEN cDNA 6720489N17 gene
Tssr4100 13 62621084 to 62621085 1 - TSS region transcription start site region 4100
Tssr122955 13 62624135 to 62624182 47 - TSS region transcription start site region 122955
Gm24020 13 62624194 to 62624301 107 + miRNA gene predicted gene, 24020
Gm46421 13 62630175 to 62633775 3600 - lncRNA gene predicted gene, 46421
Gm36298 13 62639886 to 62643252 3366 - pseudogene predicted gene, 36298
Tssr122956 13 62653192 to 62653232 40 - TSS region transcription start site region 122956
Gm7045 13 62670299 to 62670903 604 - pseudogene predicted gene 7045
Gm45951 13 62671784 to 62706256 34472 - protein coding gene predicted gene, 45951
Gm48735 13 62681192 to 62682501 1309 - unclassified gene predicted gene, 48735
Platr25 13 62696953 to 62724217 27264 - lincRNA gene pluripotency associated transcript 25
Gm48734 13 62734907 to 62737195 2288 - unclassified gene predicted gene, 48734
Gm40979 13 62739042 to 62761999 22957 - lncRNA gene predicted gene, 40979
Tssr122957 13 62760686 to 62760715 29 - TSS region transcription start site region 122957
Mir713 13 62760739 to 62760846 107 + miRNA gene microRNA 713
Gm5141 13 62772200 to 62785808 13608 - protein coding gene predicted gene 5141
Tssr120162 13 62778596 to 62778604 8 + TSS region transcription start site region 120162
Gm21963 13 62778782 to 62779111 329 + pseudogene predicted gene, 21963
Gm24588 13 62779594 to 62779676 82 + miRNA gene predicted gene, 24588
Gm25448 13 62791507 to 62791613 106 + snRNA gene predicted gene, 25448
Cpgi5758 13 62812898 to 62813169 271 CpG island CpG island 5758
Tssr4101 13 62812971 to 62813019 48 + TSS region transcription start site region 4101
Gm7049 13 62813076 to 62814787 1711 + pseudogene predicted gene 7049
Gm48795 13 62813969 to 62815523 1554 - lincRNA gene predicted gene, 48795
Fbp2 13 62836885 to 62858370 21485 - protein coding gene fructose bisphosphatase 2
Tssr122958 13 62858346 to 62858359 13 - TSS region transcription start site region 122958
Tssr122959 13 62858364 to 62858411 47 - TSS region transcription start site region 122959
Tssr122960 13 62858415 to 62858425 10 - TSS region transcription start site region 122960
Tssr122961 13 62858702 to 62858723 21 - TSS region transcription start site region 122961
Fbp1 13 62864753 to 62888282 23529 - protein coding gene fructose bisphosphatase 1
Tssr122962 13 62867365 to 62867385 20 - TSS region transcription start site region 122962
Gm38679 13 62878667 to 62885078 6411 - lncRNA gene predicted gene, 38679
Tssr122963 13 62879975 to 62880014 39 - TSS region transcription start site region 122963
Cpgi5759 13 62887704 to 62888218 514 CpG island CpG island 5759
Tssr122964 13 62888127 to 62888149 22 - TSS region transcription start site region 122964
Tssr122965 13 62888153 to 62888168 15 - TSS region transcription start site region 122965
Tssr122966 13 62888380 to 62888393 13 - TSS region transcription start site region 122966
D13Ertd205e 13 62894867 to 62895075 208 DNA segment DNA segment, Chr 13, ERATO Doi 205, expressed
Gm40981 13 62912315 to 62917835 5520 - lncRNA gene predicted gene, 40981
Gm48812 13 62944561 to 62949442 4881 - lincRNA gene predicted gene, 48812
Cpgi5760 13 62964657 to 62965392 735 CpG island CpG island 5760
Tssr120163 13 62964867 to 62964931 64 + TSS region transcription start site region 120163
Aopep 13 62964893 to 63326096 361203 + protein coding gene aminopeptidase O
Tssr120164 13 62964938 to 62964951 13 + TSS region transcription start site region 120164
Tubb2a-ps1 13 62967346 to 62968657 1311 - pseudogene tubulin, beta 2a, pseudogene 1
Cpgi5761 13 62967521 to 62967736 215 CpG island CpG island 5761
Cpgi5762 13 62968575 to 62968752 177 CpG island CpG island 5762
Tssr4102 13 62968735 to 62968740 5 - TSS region transcription start site region 4102
Gm47584 13 63009959 to 63011240 1281 + unclassified gene predicted gene, 47584
Tssr4103 13 63063889 to 63063891 2 + TSS region transcription start site region 4103
Gm46422 13 63090776 to 63094751 3975 - lncRNA gene predicted gene, 46422
Tssr120165 13 63108893 to 63108904 11 + TSS region transcription start site region 120165
Tssr120166 13 63109002 to 63109016 14 + TSS region transcription start site region 120166
Tssr122967 13 63113094 to 63113105 11 - TSS region transcription start site region 122967
Tssr120167 13 63113268 to 63113305 37 + TSS region transcription start site region 120167
Tssr120168 13 63117029 to 63117039 10 + TSS region transcription start site region 120168
Tssr120169 13 63117049 to 63117060 11 + TSS region transcription start site region 120169
Gm30409 13 63134051 to 63134511 460 + sense intronic lncRNA gene predicted gene, 30409
Gm47587 13 63142494 to 63143934 1440 + sense intronic lncRNA gene predicted gene, 47587
Tssr120170 13 63151508 to 63151530 22 + TSS region transcription start site region 120170
Tssr120171 13 63151534 to 63151547 13 + TSS region transcription start site region 120171
Gm47583 13 63210950 to 63214374 3424 + unclassified gene predicted gene, 47583
Tssr120172 13 63239551 to 63239576 25 + TSS region transcription start site region 120172
Cpgi5763 13 63239556 to 63240554 998 CpG island CpG island 5763
Tssr120173 13 63240013 to 63240051 38 + TSS region transcription start site region 120173
Tssr120174 13 63240056 to 63240093 37 + TSS region transcription start site region 120174
Tssr120175 13 63240386 to 63240400 14 + TSS region transcription start site region 120175
Tssr120176 13 63240545 to 63240567 22 + TSS region transcription start site region 120176
Tssr120177 13 63241037 to 63241040 3 + TSS region transcription start site region 120177
Gm47586 13 63244221 to 63246248 2027 + unclassified gene predicted gene, 47586
Tssr122968 13 63246246 to 63246250 4 - TSS region transcription start site region 122968
Tssr120178 13 63246838 to 63246847 9 + TSS region transcription start site region 120178
Tssr120179 13 63246875 to 63246880 5 + TSS region transcription start site region 120179
Tssr120180 13 63251378 to 63251392 14 + TSS region transcription start site region 120180
Tssr120181 13 63251724 to 63251750 26 + TSS region transcription start site region 120181
Tssr120182 13 63252604 to 63252609 5 + TSS region transcription start site region 120182
Gm47603 13 63253024 to 63255564 2540 - unclassified gene predicted gene, 47603
Tssr4104 13 63256763 to 63256773 10 + TSS region transcription start site region 4104
Tssr120183 13 63271451 to 63271457 6 + TSS region transcription start site region 120183
Tssr120184 13 63272596 to 63272600 4 + TSS region transcription start site region 120184
Tssr122969 13 63272657 to 63272664 7 - TSS region transcription start site region 122969
Tssr120185 13 63272793 to 63272808 15 + TSS region transcription start site region 120185
Tssr120186 13 63272987 to 63273005 18 + TSS region transcription start site region 120186
Gm47585 13 63273600 to 63275911 2311 + unclassified gene predicted gene, 47585
Tssr120187 13 63273615 to 63273618 3 + TSS region transcription start site region 120187
Tssr120188 13 63274399 to 63274402 3 + TSS region transcription start site region 120188
Gm47602 13 63276905 to 63279224 2319 - unclassified gene predicted gene, 47602
Tssr120189 13 63278906 to 63278919 13 + TSS region transcription start site region 120189
Tssr120190 13 63279012 to 63279025 13 + TSS region transcription start site region 120190
Tssr120191 13 63279111 to 63279137 26 + TSS region transcription start site region 120191
Tssr122970 13 63288501 to 63288506 5 - TSS region transcription start site region 122970
Gm16907 13 63289601 to 63297147 7546 - lincRNA gene predicted gene, 16907
Tssr120192 13 63293159 to 63293166 7 + TSS region transcription start site region 120192
D13Mit283 13 63297367 to 63297479 112 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 283
Mir23b 13 63300484 to 63300557 73 + miRNA gene microRNA 23b
Mirc22 13 63300484 to 63301275 791 complex/cluster/region microRNA cluster 22, including Mir23b through Mir24-1
Mir27b 13 63300712 to 63300784 72 + miRNA gene microRNA 27b
Mir3074-1 13 63301199 to 63301283 84 - miRNA gene microRNA 3074-1
Mir24-1 13 63301208 to 63301275 67 + miRNA gene microRNA 24-1
Tssr120193 13 63301270 to 63301276 6 + TSS region transcription start site region 120193
Fancc 13 63304705 to 63497294 192589 - protein coding gene Fanconi anemia, complementation group C
Tssr122971 13 63323518 to 63323525 7 - TSS region transcription start site region 122971
Tssr122972 13 63325017 to 63325021 4 - TSS region transcription start site region 122972
Gm16133 13 63329556 to 63339961 10405 + antisense lncRNA gene predicted gene 16133
Gm16132 13 63376761 to 63381045 4284 - sense intronic lncRNA gene predicted gene 16132
Tssr122973 13 63398252 to 63398261 9 - TSS region transcription start site region 122973
Tssr122974 13 63398281 to 63398299 18 - TSS region transcription start site region 122974
Gm47588 13 63410918 to 63414767 3849 - unclassified gene predicted gene, 47588
Cpgi5764 13 63430898 to 63431978 1080 CpG island CpG island 5764
Tssr122975 13 63431587 to 63431617 30 - TSS region transcription start site region 122975
Tssr122976 13 63431698 to 63431733 35 - TSS region transcription start site region 122976
Tssr122977 13 63431737 to 63431755 18 - TSS region transcription start site region 122977
Gm16134 13 63446930 to 63447265 335 - pseudogene predicted gene 16134
Cpgi5765 13 63497076 to 63497304 228 CpG island CpG island 5765
Ptch1 13 63508328 to 63573598 65270 - protein coding gene patched 1
D13Mit123 13 63527597 to 63527742 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 123
Tssr122978 13 63533584 to 63533605 21 - TSS region transcription start site region 122978
Tssr122979 13 63539338 to 63539352 14 - TSS region transcription start site region 122979
Tssr122980 13 63540323 to 63540329 6 - TSS region transcription start site region 122980
Tssr122981 13 63553321 to 63553325 4 - TSS region transcription start site region 122981
Tssr122982 13 63563067 to 63563084 17 - TSS region transcription start site region 122982
Cpgi5766 13 63563070 to 63566672 3602 CpG island CpG island 5766
Tssr122983 13 63563087 to 63563131 44 - TSS region transcription start site region 122983
Tssr120194 13 63563397 to 63563402 5 + TSS region transcription start site region 120194
Tssr122984 13 63564730 to 63564772 42 - TSS region transcription start site region 122984
Tssr122985 13 63566157 to 63566182 25 - TSS region transcription start site region 122985
Tssr122986 13 63566187 to 63566224 37 - TSS region transcription start site region 122986