Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:61391640-62741102

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cts7-ps 13 61435838 to 61438553 2715 - pseudogene cathepsin 7, pseudogene
Gm47825 13 61443965 to 61444195 230 + pseudogene predicted gene, 47825
Ctsm-ps2 13 61482408 to 61490329 7921 - pseudogene cathepsin M, pseudogene 2
Gm47848 13 61510288 to 61511518 1230 + pseudogene predicted gene, 47848
Gm7756 13 61531840 to 61532673 833 - pseudogene predicted gene 7756
Ctsm 13 61535743 to 61541839 6096 - protein coding gene cathepsin M
Gm49352 13 61538390 to 61568174 29784 - protein coding gene predicted gene, 49352
Tssr122948 13 61541828 to 61541842 14 - TSS region transcription start site region 122948
Tssr122949 13 61541892 to 61541900 8 - TSS region transcription start site region 122949
Cts3 13 61564630 to 61570127 5497 - protein coding gene cathepsin 3
Tssr122950 13 61567914 to 61567920 6 - TSS region transcription start site region 122950
Tssr122951 13 61570097 to 61570109 12 - TSS region transcription start site region 122951
Tssr122952 13 61570111 to 61570135 24 - TSS region transcription start site region 122952
Gm21933 13 61630023 to 61636282 6259 + protein coding gene predicted gene, 21933
Gm49357 13 61655303 to 61743770 88467 + lincRNA gene predicted gene, 49357
Gm20599 13 61655310 to 61700833 45523 + pseudogene predicted gene, 20599
Cpgi5755 13 61665811 to 61666207 396 CpG island CpG island 5755
Gm7622 13 61665941 to 61667140 1199 + pseudogene predicted pseudogene 7622
Gm6474 13 61687282 to 61687980 698 - pseudogene predicted gene 6474
Gm48116 13 61709556 to 61711238 1682 + lincRNA gene predicted gene, 48116
Gm6436 13 61710587 to 61711371 784 - pseudogene predicted gene 6436
Tssr120155 13 61712975 to 61712998 23 + TSS region transcription start site region 120155
Gm9595 13 61723588 to 61724331 743 + pseudogene predicted gene 9595
BC052688 13 61771580 to 61787282 15702 + pseudogene cDNA sequence BC052688
Selenok-ps4 13 61799903 to 61800179 276 + pseudogene selenoprotein K, pseudogene 4
Gm23739 13 61804141 to 61804248 107 - miRNA gene predicted gene, 23739
Gm7240 13 61804257 to 61861675 57418 + pseudogene predicted gene 7240
Tssr4099 13 61804272 to 61804308 36 + TSS region transcription start site region 4099
Gm24193 13 61823544 to 61823664 120 - miRNA gene predicted gene, 24193
Tssr120156 13 61827502 to 61827505 3 + TSS region transcription start site region 120156
Gm35619 13 61917549 to 61918148 599 + pseudogene predicted gene, 35619
Gm21935 13 61984004 to 61993289 9285 + pseudogene predicted gene, 21935
Tssr120157 13 61995287 to 61995297 10 + TSS region transcription start site region 120157
Tssr122953 13 61999542 to 61999545 3 - TSS region transcription start site region 122953
Gm48228 13 62006640 to 62126102 119462 - lincRNA gene predicted gene, 48228
Selenok-ps8 13 62006668 to 62006947 279 + pseudogene selenoprotein K, pseudogene 8
Gm25649 13 62013035 to 62013144 109 - miRNA gene predicted gene, 25649
Gm3325 13 62015605 to 62050986 35381 + protein coding gene predicted gene 3325
Tssr120158 13 62015918 to 62015960 42 + TSS region transcription start site region 120158
Cpgi5756 13 62015949 to 62016170 221 CpG island CpG island 5756
Gm6478 13 62035422 to 62036163 741 + pseudogene predicted pseudogene 6478
Gm40977 13 62102690 to 62112031 9341 + pseudogene predicted gene, 40977
Selenok-ps5 13 62125729 to 62126006 277 + pseudogene selenoprotein K, pseudogene 5
Zfp808 13 62129890 to 62173938 44048 + protein coding gene zinc finger protein 808
Tssr120159 13 62129894 to 62129923 29 + TSS region transcription start site region 120159
Gm23713 13 62136762 to 62136831 69 + snoRNA gene predicted gene, 23713
Gm24539 13 62136930 to 62137062 132 + snoRNA gene predicted gene, 24539
Gm36501 13 62151170 to 62151914 744 + pseudogene predicted gene, 36501
Gm7640 13 62199609 to 62200482 873 - pseudogene predicted gene 7640
Gm17352 13 62217501 to 62217986 485 - pseudogene predicted gene, 17352
2810408B13Rik 13 62232674 to 62237254 4580 + unclassified non-coding RNA gene RIKEN cDNA 2810408B13 gene
Tssr120160 13 62263575 to 62263612 37 + TSS region transcription start site region 120160
Tssr120161 13 62263613 to 62263624 11 + TSS region transcription start site region 120161
Gm3333 13 62273747 to 62275241 1494 + pseudogene predicted gene 3333
Gm3338 13 62322396 to 62322664 268 + pseudogene predicted gene 3338
Gm19792 13 62336463 to 62340727 4264 - pseudogene predicted gene, 19792
Gm3604 13 62368328 to 62383177 14849 - protein coding gene predicted gene 3604
Gm25933 13 62383237 to 62383344 107 + miRNA gene predicted gene, 25933
Gm23855 13 62384918 to 62385052 134 + snoRNA gene predicted gene, 23855
Gm48690 13 62385104 to 62385416 312 + pseudogene predicted gene, 48690
Selenok-ps6 13 62387651 to 62387933 282 - pseudogene selenoprotein K, pseudogene 6
Gm48691 13 62402493 to 62417043 14550 - pseudogene predicted gene, 48691
Gm48699 13 62432866 to 62434390 1524 - unclassified gene predicted gene, 48699
Gm48701 13 62449317 to 62451609 2292 - unclassified gene predicted gene, 48701
Zfp935 13 62453016 to 62466812 13796 - protein coding gene zinc finger protein 935
Gm49359 13 62453016 to 62466832 13816 - protein coding gene predicted gene, 49359
Cpgi5757 13 62466640 to 62466864 224 CpG island CpG island 5757
Tssr122954 13 62466794 to 62466839 45 - TSS region transcription start site region 122954
Gm22256 13 62466865 to 62466971 106 + miRNA gene predicted gene, 22256
Gm21145 13 62486263 to 62498749 12486 - lncRNA gene predicted gene, 21145
Zfp934 13 62516795 to 62579320 62525 - protein coding gene zinc finger protein 934
Gm7664 13 62528216 to 62528960 744 - pseudogene predicted gene 7664
Gm24095 13 62543203 to 62543335 132 - snoRNA gene predicted gene, 24095
Gm22615 13 62543434 to 62543503 69 - snoRNA gene predicted gene, 22615
Gm38639 13 62552641 to 62555638 2997 - lncRNA gene predicted gene, 38639
6720489N17Rik 13 62603013 to 62624182 21169 - protein coding gene RIKEN cDNA 6720489N17 gene
Tssr4100 13 62621084 to 62621085 1 - TSS region transcription start site region 4100
Tssr122955 13 62624135 to 62624182 47 - TSS region transcription start site region 122955
Gm24020 13 62624194 to 62624301 107 + miRNA gene predicted gene, 24020
Gm46421 13 62630175 to 62633775 3600 - lncRNA gene predicted gene, 46421
Gm36298 13 62639886 to 62643252 3366 - pseudogene predicted gene, 36298
Tssr122956 13 62653192 to 62653232 40 - TSS region transcription start site region 122956
Gm7045 13 62670299 to 62670903 604 - pseudogene predicted gene 7045
Gm45951 13 62671784 to 62706256 34472 - protein coding gene predicted gene, 45951
Gm48735 13 62681192 to 62682501 1309 - unclassified gene predicted gene, 48735
Platr25 13 62696953 to 62724217 27264 - lincRNA gene pluripotency associated transcript 25
Gm48734 13 62734907 to 62737195 2288 - unclassified gene predicted gene, 48734
Gm40979 13 62739042 to 62761999 22957 - lncRNA gene predicted gene, 40979