Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:61221828-61861842

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cts8 13 61246747 to 61255348 8601 - protein coding gene cathepsin 8
Gm49398 13 61247878 to 61288839 40961 - protein coding gene predicted gene, 49398
Tssr122946 13 61255345 to 61255350 5 - TSS region transcription start site region 122946
Cts8-ps 13 61281380 to 61288850 7470 - pseudogene cathepsin 8, pseudogene
Gm5664 13 61298210 to 61303414 5204 - pseudogene predicted gene 5664
Gm27704 13 61336455 to 61336561 106 + miRNA gene predicted gene, 27704
Cts7 13 61352461 to 61358197 5736 - protein coding gene cathepsin 7
Tssr122947 13 61358193 to 61358198 5 - TSS region transcription start site region 122947
Cts7-ps 13 61435838 to 61438553 2715 - pseudogene cathepsin 7, pseudogene
Gm47825 13 61443965 to 61444195 230 + pseudogene predicted gene, 47825
Ctsm-ps2 13 61482408 to 61490329 7921 - pseudogene cathepsin M, pseudogene 2
Gm47848 13 61510288 to 61511518 1230 + pseudogene predicted gene, 47848
Gm7756 13 61531840 to 61532673 833 - pseudogene predicted gene 7756
Ctsm 13 61535743 to 61541839 6096 - protein coding gene cathepsin M
Gm49352 13 61538390 to 61568174 29784 - protein coding gene predicted gene, 49352
Tssr122948 13 61541828 to 61541842 14 - TSS region transcription start site region 122948
Tssr122949 13 61541892 to 61541900 8 - TSS region transcription start site region 122949
Cts3 13 61564630 to 61570127 5497 - protein coding gene cathepsin 3
Tssr122950 13 61567914 to 61567920 6 - TSS region transcription start site region 122950
Tssr122951 13 61570097 to 61570109 12 - TSS region transcription start site region 122951
Tssr122952 13 61570111 to 61570135 24 - TSS region transcription start site region 122952
Gm21933 13 61630023 to 61636282 6259 + protein coding gene predicted gene, 21933
Gm49357 13 61655303 to 61743770 88467 + lincRNA gene predicted gene, 49357
Gm20599 13 61655310 to 61700833 45523 + pseudogene predicted gene, 20599
Cpgi5755 13 61665811 to 61666207 396 CpG island CpG island 5755
Gm7622 13 61665941 to 61667140 1199 + pseudogene predicted pseudogene 7622
Gm6474 13 61687282 to 61687980 698 - pseudogene predicted gene 6474
Gm48116 13 61709556 to 61711238 1682 + lincRNA gene predicted gene, 48116
Gm6436 13 61710587 to 61711371 784 - pseudogene predicted gene 6436
Tssr120155 13 61712975 to 61712998 23 + TSS region transcription start site region 120155
Gm9595 13 61723588 to 61724331 743 + pseudogene predicted gene 9595
BC052688 13 61771580 to 61787282 15702 + pseudogene cDNA sequence BC052688
Selenok-ps4 13 61799903 to 61800179 276 + pseudogene selenoprotein K, pseudogene 4
Gm23739 13 61804141 to 61804248 107 - miRNA gene predicted gene, 23739
Gm7240 13 61804257 to 61861675 57418 + pseudogene predicted gene 7240
Tssr4099 13 61804272 to 61804308 36 + TSS region transcription start site region 4099
Gm24193 13 61823544 to 61823664 120 - miRNA gene predicted gene, 24193
Tssr120156 13 61827502 to 61827505 3 + TSS region transcription start site region 120156