Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:60913016-64006812

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291 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49393 13 60853230 to 60935590 82360 - protein coding gene predicted gene, 49393
Gm49391 13 60895350 to 60936571 41221 - protein coding gene predicted gene, 49391
Tssr120141 13 60928082 to 60928088 6 + TSS region transcription start site region 120141
Gm24594 13 60928086 to 60928184 98 + snRNA gene predicted gene, 24594
Ctla2a 13 60934155 to 60936625 2470 - protein coding gene cytotoxic T lymphocyte-associated protein 2 alpha
Tssr120142 13 60934771 to 60934778 7 + TSS region transcription start site region 120142
Tssr122922 13 60934800 to 60934811 11 - TSS region transcription start site region 122922
Tssr122923 13 60934815 to 60934825 10 - TSS region transcription start site region 122923
Tssr120143 13 60935627 to 60935640 13 + TSS region transcription start site region 120143
Tssr122924 13 60936443 to 60936471 28 - TSS region transcription start site region 122924
Tssr122925 13 60936550 to 60936569 19 - TSS region transcription start site region 122925
Tssr122926 13 60936782 to 60936787 5 - TSS region transcription start site region 122926
Tpbpa 13 60938692 to 60941935 3243 - protein coding gene trophoblast specific protein alpha
Tssr122927 13 60939406 to 60939415 9 - TSS region transcription start site region 122927
Tssr122928 13 60939429 to 60939434 5 - TSS region transcription start site region 122928
Tssr120144 13 60939457 to 60939472 15 + TSS region transcription start site region 120144
Tssr120145 13 60939559 to 60939584 25 + TSS region transcription start site region 120145
Tssr120146 13 60939965 to 60939969 4 + TSS region transcription start site region 120146
Tssr120147 13 60939977 to 60939997 20 + TSS region transcription start site region 120147
Tssr122929 13 60939989 to 60939995 6 - TSS region transcription start site region 122929
Tssr120148 13 60940181 to 60940190 9 + TSS region transcription start site region 120148
Tssr122930 13 60940183 to 60940191 8 - TSS region transcription start site region 122930
Tssr120149 13 60940212 to 60940223 11 + TSS region transcription start site region 120149
Tssr122931 13 60940226 to 60940233 7 - TSS region transcription start site region 122931
Tssr120150 13 60940229 to 60940230 1 + TSS region transcription start site region 120150
Tssr122932 13 60940234 to 60940246 12 - TSS region transcription start site region 122932
Tssr122933 13 60940633 to 60940653 20 - TSS region transcription start site region 122933
Tssr122934 13 60941916 to 60941923 7 - TSS region transcription start site region 122934
Tssr122935 13 60941932 to 60941939 7 - TSS region transcription start site region 122935
Tssr122936 13 60941944 to 60941945 1 - TSS region transcription start site region 122936
D13Mit318 13 60944485 to 60944607 122 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 318
Tssr120151 13 60955166 to 60955168 2 + TSS region transcription start site region 120151
Gm40975 13 60955219 to 60959948 4729 + lincRNA gene predicted gene, 40975
Gm40976 13 60962820 to 60962931 111 - lncRNA gene predicted gene, 40976
Ctsj 13 61000277 to 61005958 5681 - protein coding gene cathepsin J
Tssr120152 13 61003708 to 61003749 41 + TSS region transcription start site region 120152
Tssr120153 13 61004026 to 61004042 16 + TSS region transcription start site region 120153
Tssr122937 13 61005918 to 61005930 12 - TSS region transcription start site region 122937
Ctsq 13 61035038 to 61040597 5559 - protein coding gene cathepsin Q
Tssr122938 13 61037746 to 61037754 8 - TSS region transcription start site region 122938
Tssr120154 13 61039076 to 61039126 50 + TSS region transcription start site region 120154
Tssr122939 13 61040601 to 61040608 7 - TSS region transcription start site region 122939
Tssr122940 13 61040614 to 61040637 23 - TSS region transcription start site region 122940
Gm18064 13 61146195 to 61147543 1348 - pseudogene predicted gene, 18064
Ctsr 13 61159215 to 61164188 4973 - protein coding gene cathepsin R
Tssr122941 13 61164197 to 61164210 13 - TSS region transcription start site region 122941
Tssr122942 13 61164211 to 61164215 4 - TSS region transcription start site region 122942
Cts6 13 61195147 to 61203392 8245 - protein coding gene cathepsin 6
Tssr122943 13 61202189 to 61202227 38 - TSS region transcription start site region 122943
Tssr122944 13 61203406 to 61203418 12 - TSS region transcription start site region 122944
Tssr122945 13 61203428 to 61203430 2 - TSS region transcription start site region 122945
Cts8 13 61246747 to 61255348 8601 - protein coding gene cathepsin 8
Gm49398 13 61247878 to 61288839 40961 - protein coding gene predicted gene, 49398
Tssr122946 13 61255345 to 61255350 5 - TSS region transcription start site region 122946
Cts8-ps 13 61281380 to 61288850 7470 - pseudogene cathepsin 8, pseudogene
Gm5664 13 61298210 to 61303414 5204 - pseudogene predicted gene 5664
Gm27704 13 61336455 to 61336561 106 + miRNA gene predicted gene, 27704
Cts7 13 61352461 to 61358197 5736 - protein coding gene cathepsin 7
Tssr122947 13 61358193 to 61358198 5 - TSS region transcription start site region 122947
Cts7-ps 13 61435838 to 61438553 2715 - pseudogene cathepsin 7, pseudogene
Gm47825 13 61443965 to 61444195 230 + pseudogene predicted gene, 47825
Ctsm-ps2 13 61482408 to 61490329 7921 - pseudogene cathepsin M, pseudogene 2
Gm47848 13 61510288 to 61511518 1230 + pseudogene predicted gene, 47848
Gm7756 13 61531840 to 61532673 833 - pseudogene predicted gene 7756
Ctsm 13 61535743 to 61541839 6096 - protein coding gene cathepsin M
Gm49352 13 61538390 to 61568174 29784 - protein coding gene predicted gene, 49352
Tssr122948 13 61541828 to 61541842 14 - TSS region transcription start site region 122948
Tssr122949 13 61541892 to 61541900 8 - TSS region transcription start site region 122949
Cts3 13 61564630 to 61570127 5497 - protein coding gene cathepsin 3
Tssr122950 13 61567914 to 61567920 6 - TSS region transcription start site region 122950
Tssr122951 13 61570097 to 61570109 12 - TSS region transcription start site region 122951
Tssr122952 13 61570111 to 61570135 24 - TSS region transcription start site region 122952
Gm21933 13 61630023 to 61636282 6259 + protein coding gene predicted gene, 21933
Gm49357 13 61655303 to 61743770 88467 + lincRNA gene predicted gene, 49357
Gm20599 13 61655310 to 61700833 45523 + pseudogene predicted gene, 20599
Cpgi5755 13 61665811 to 61666207 396 CpG island CpG island 5755
Gm7622 13 61665941 to 61667140 1199 + pseudogene predicted pseudogene 7622
Gm6474 13 61687282 to 61687980 698 - pseudogene predicted gene 6474
Gm48116 13 61709556 to 61711238 1682 + lincRNA gene predicted gene, 48116
Gm6436 13 61710587 to 61711371 784 - pseudogene predicted gene 6436
Tssr120155 13 61712975 to 61712998 23 + TSS region transcription start site region 120155
Gm9595 13 61723588 to 61724331 743 + pseudogene predicted gene 9595
BC052688 13 61771580 to 61787282 15702 + pseudogene cDNA sequence BC052688
Selenok-ps4 13 61799903 to 61800179 276 + pseudogene selenoprotein K, pseudogene 4
Gm23739 13 61804141 to 61804248 107 - miRNA gene predicted gene, 23739
Gm7240 13 61804257 to 61861675 57418 + pseudogene predicted gene 7240
Tssr4099 13 61804272 to 61804308 36 + TSS region transcription start site region 4099
Gm24193 13 61823544 to 61823664 120 - miRNA gene predicted gene, 24193
Tssr120156 13 61827502 to 61827505 3 + TSS region transcription start site region 120156
Gm35619 13 61917549 to 61918148 599 + pseudogene predicted gene, 35619
Gm21935 13 61984004 to 61993289 9285 + pseudogene predicted gene, 21935
Tssr120157 13 61995287 to 61995297 10 + TSS region transcription start site region 120157
Tssr122953 13 61999542 to 61999545 3 - TSS region transcription start site region 122953
Gm48228 13 62006640 to 62126102 119462 - lincRNA gene predicted gene, 48228
Selenok-ps8 13 62006668 to 62006947 279 + pseudogene selenoprotein K, pseudogene 8
Gm25649 13 62013035 to 62013144 109 - miRNA gene predicted gene, 25649
Gm3325 13 62015605 to 62050986 35381 + protein coding gene predicted gene 3325
Tssr120158 13 62015918 to 62015960 42 + TSS region transcription start site region 120158
Cpgi5756 13 62015949 to 62016170 221 CpG island CpG island 5756
Gm6478 13 62035422 to 62036163 741 + pseudogene predicted pseudogene 6478
Gm40977 13 62102690 to 62112031 9341 + pseudogene predicted gene, 40977
Selenok-ps5 13 62125729 to 62126006 277 + pseudogene selenoprotein K, pseudogene 5
Zfp808 13 62129890 to 62173938 44048 + protein coding gene zinc finger protein 808
Tssr120159 13 62129894 to 62129923 29 + TSS region transcription start site region 120159
Gm23713 13 62136762 to 62136831 69 + snoRNA gene predicted gene, 23713
Gm24539 13 62136930 to 62137062 132 + snoRNA gene predicted gene, 24539
Gm36501 13 62151170 to 62151914 744 + pseudogene predicted gene, 36501
Gm7640 13 62199609 to 62200482 873 - pseudogene predicted gene 7640
Gm17352 13 62217501 to 62217986 485 - pseudogene predicted gene, 17352
2810408B13Rik 13 62232674 to 62237254 4580 + unclassified non-coding RNA gene RIKEN cDNA 2810408B13 gene
Tssr120160 13 62263575 to 62263612 37 + TSS region transcription start site region 120160
Tssr120161 13 62263613 to 62263624 11 + TSS region transcription start site region 120161
Gm3333 13 62273747 to 62275241 1494 + pseudogene predicted gene 3333
Gm3338 13 62322396 to 62322664 268 + pseudogene predicted gene 3338
Gm19792 13 62336463 to 62340727 4264 - pseudogene predicted gene, 19792
Gm3604 13 62368328 to 62383177 14849 - protein coding gene predicted gene 3604
Gm25933 13 62383237 to 62383344 107 + miRNA gene predicted gene, 25933
Gm23855 13 62384918 to 62385052 134 + snoRNA gene predicted gene, 23855
Gm48690 13 62385104 to 62385416 312 + pseudogene predicted gene, 48690
Selenok-ps6 13 62387651 to 62387933 282 - pseudogene selenoprotein K, pseudogene 6
Gm48691 13 62402493 to 62417043 14550 - pseudogene predicted gene, 48691
Gm48699 13 62432866 to 62434390 1524 - unclassified gene predicted gene, 48699
Gm48701 13 62449317 to 62451609 2292 - unclassified gene predicted gene, 48701
Zfp935 13 62453016 to 62466812 13796 - protein coding gene zinc finger protein 935
Gm49359 13 62453016 to 62466832 13816 - protein coding gene predicted gene, 49359
Cpgi5757 13 62466640 to 62466864 224 CpG island CpG island 5757
Tssr122954 13 62466794 to 62466839 45 - TSS region transcription start site region 122954
Gm22256 13 62466865 to 62466971 106 + miRNA gene predicted gene, 22256
Gm21145 13 62486263 to 62498749 12486 - lncRNA gene predicted gene, 21145
Zfp934 13 62516795 to 62579320 62525 - protein coding gene zinc finger protein 934
Gm7664 13 62528216 to 62528960 744 - pseudogene predicted gene 7664
Gm24095 13 62543203 to 62543335 132 - snoRNA gene predicted gene, 24095
Gm22615 13 62543434 to 62543503 69 - snoRNA gene predicted gene, 22615
Gm38639 13 62552641 to 62555638 2997 - lncRNA gene predicted gene, 38639
6720489N17Rik 13 62603013 to 62624182 21169 - protein coding gene RIKEN cDNA 6720489N17 gene
Tssr4100 13 62621084 to 62621085 1 - TSS region transcription start site region 4100
Tssr122955 13 62624135 to 62624182 47 - TSS region transcription start site region 122955
Gm24020 13 62624194 to 62624301 107 + miRNA gene predicted gene, 24020
Gm46421 13 62630175 to 62633775 3600 - lncRNA gene predicted gene, 46421
Gm36298 13 62639886 to 62643252 3366 - pseudogene predicted gene, 36298
Tssr122956 13 62653192 to 62653232 40 - TSS region transcription start site region 122956
Gm7045 13 62670299 to 62670903 604 - pseudogene predicted gene 7045
Gm45951 13 62671784 to 62706256 34472 - protein coding gene predicted gene, 45951
Gm48735 13 62681192 to 62682501 1309 - unclassified gene predicted gene, 48735
Platr25 13 62696953 to 62724217 27264 - lincRNA gene pluripotency associated transcript 25
Gm48734 13 62734907 to 62737195 2288 - unclassified gene predicted gene, 48734
Gm40979 13 62739042 to 62761999 22957 - lncRNA gene predicted gene, 40979
Tssr122957 13 62760686 to 62760715 29 - TSS region transcription start site region 122957
Mir713 13 62760739 to 62760846 107 + miRNA gene microRNA 713
Gm5141 13 62772200 to 62785808 13608 - protein coding gene predicted gene 5141
Tssr120162 13 62778596 to 62778604 8 + TSS region transcription start site region 120162
Gm21963 13 62778782 to 62779111 329 + pseudogene predicted gene, 21963
Gm24588 13 62779594 to 62779676 82 + miRNA gene predicted gene, 24588
Gm25448 13 62791507 to 62791613 106 + snRNA gene predicted gene, 25448
Cpgi5758 13 62812898 to 62813169 271 CpG island CpG island 5758
Tssr4101 13 62812971 to 62813019 48 + TSS region transcription start site region 4101
Gm7049 13 62813076 to 62814787 1711 + pseudogene predicted gene 7049
Gm48795 13 62813969 to 62815523 1554 - lincRNA gene predicted gene, 48795
Fbp2 13 62836885 to 62858370 21485 - protein coding gene fructose bisphosphatase 2
Tssr122958 13 62858346 to 62858359 13 - TSS region transcription start site region 122958
Tssr122959 13 62858364 to 62858411 47 - TSS region transcription start site region 122959
Tssr122960 13 62858415 to 62858425 10 - TSS region transcription start site region 122960
Tssr122961 13 62858702 to 62858723 21 - TSS region transcription start site region 122961
Fbp1 13 62864753 to 62888282 23529 - protein coding gene fructose bisphosphatase 1
Tssr122962 13 62867365 to 62867385 20 - TSS region transcription start site region 122962
Gm38679 13 62878667 to 62885078 6411 - lncRNA gene predicted gene, 38679
Tssr122963 13 62879975 to 62880014 39 - TSS region transcription start site region 122963
Cpgi5759 13 62887704 to 62888218 514 CpG island CpG island 5759
Tssr122964 13 62888127 to 62888149 22 - TSS region transcription start site region 122964
Tssr122965 13 62888153 to 62888168 15 - TSS region transcription start site region 122965
Tssr122966 13 62888380 to 62888393 13 - TSS region transcription start site region 122966
D13Ertd205e 13 62894867 to 62895075 208 DNA segment DNA segment, Chr 13, ERATO Doi 205, expressed
Gm40981 13 62912315 to 62917835 5520 - lncRNA gene predicted gene, 40981
Gm48812 13 62944561 to 62949442 4881 - lincRNA gene predicted gene, 48812
Cpgi5760 13 62964657 to 62965392 735 CpG island CpG island 5760
Tssr120163 13 62964867 to 62964931 64 + TSS region transcription start site region 120163
Aopep 13 62964893 to 63326096 361203 + protein coding gene aminopeptidase O
Tssr120164 13 62964938 to 62964951 13 + TSS region transcription start site region 120164
Tubb2a-ps1 13 62967346 to 62968657 1311 - pseudogene tubulin, beta 2a, pseudogene 1
Cpgi5761 13 62967521 to 62967736 215 CpG island CpG island 5761
Cpgi5762 13 62968575 to 62968752 177 CpG island CpG island 5762
Tssr4102 13 62968735 to 62968740 5 - TSS region transcription start site region 4102
Gm47584 13 63009959 to 63011240 1281 + unclassified gene predicted gene, 47584
Tssr4103 13 63063889 to 63063891 2 + TSS region transcription start site region 4103
Gm46422 13 63090776 to 63094751 3975 - lncRNA gene predicted gene, 46422
Tssr120165 13 63108893 to 63108904 11 + TSS region transcription start site region 120165
Tssr120166 13 63109002 to 63109016 14 + TSS region transcription start site region 120166
Tssr122967 13 63113094 to 63113105 11 - TSS region transcription start site region 122967
Tssr120167 13 63113268 to 63113305 37 + TSS region transcription start site region 120167
Tssr120168 13 63117029 to 63117039 10 + TSS region transcription start site region 120168
Tssr120169 13 63117049 to 63117060 11 + TSS region transcription start site region 120169
Gm30409 13 63134051 to 63134511 460 + sense intronic lncRNA gene predicted gene, 30409
Gm47587 13 63142494 to 63143934 1440 + sense intronic lncRNA gene predicted gene, 47587
Tssr120170 13 63151508 to 63151530 22 + TSS region transcription start site region 120170
Tssr120171 13 63151534 to 63151547 13 + TSS region transcription start site region 120171
Gm47583 13 63210950 to 63214374 3424 + unclassified gene predicted gene, 47583
Tssr120172 13 63239551 to 63239576 25 + TSS region transcription start site region 120172
Cpgi5763 13 63239556 to 63240554 998 CpG island CpG island 5763
Tssr120173 13 63240013 to 63240051 38 + TSS region transcription start site region 120173
Tssr120174 13 63240056 to 63240093 37 + TSS region transcription start site region 120174