Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:60905288-62116518

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49393 13 60853230 to 60935590 82360 - protein coding gene predicted gene, 49393
Gm49391 13 60895350 to 60936571 41221 - protein coding gene predicted gene, 49391
Tssr120141 13 60928082 to 60928088 6 + TSS region transcription start site region 120141
Gm24594 13 60928086 to 60928184 98 + snRNA gene predicted gene, 24594
Ctla2a 13 60934155 to 60936625 2470 - protein coding gene cytotoxic T lymphocyte-associated protein 2 alpha
Tssr120142 13 60934771 to 60934778 7 + TSS region transcription start site region 120142
Tssr122922 13 60934800 to 60934811 11 - TSS region transcription start site region 122922
Tssr122923 13 60934815 to 60934825 10 - TSS region transcription start site region 122923
Tssr120143 13 60935627 to 60935640 13 + TSS region transcription start site region 120143
Tssr122924 13 60936443 to 60936471 28 - TSS region transcription start site region 122924
Tssr122925 13 60936550 to 60936569 19 - TSS region transcription start site region 122925
Tssr122926 13 60936782 to 60936787 5 - TSS region transcription start site region 122926
Tpbpa 13 60938692 to 60941935 3243 - protein coding gene trophoblast specific protein alpha
Tssr122927 13 60939406 to 60939415 9 - TSS region transcription start site region 122927
Tssr122928 13 60939429 to 60939434 5 - TSS region transcription start site region 122928
Tssr120144 13 60939457 to 60939472 15 + TSS region transcription start site region 120144
Tssr120145 13 60939559 to 60939584 25 + TSS region transcription start site region 120145
Tssr120146 13 60939965 to 60939969 4 + TSS region transcription start site region 120146
Tssr120147 13 60939977 to 60939997 20 + TSS region transcription start site region 120147
Tssr122929 13 60939989 to 60939995 6 - TSS region transcription start site region 122929
Tssr120148 13 60940181 to 60940190 9 + TSS region transcription start site region 120148
Tssr122930 13 60940183 to 60940191 8 - TSS region transcription start site region 122930
Tssr120149 13 60940212 to 60940223 11 + TSS region transcription start site region 120149
Tssr122931 13 60940226 to 60940233 7 - TSS region transcription start site region 122931
Tssr120150 13 60940229 to 60940230 1 + TSS region transcription start site region 120150
Tssr122932 13 60940234 to 60940246 12 - TSS region transcription start site region 122932
Tssr122933 13 60940633 to 60940653 20 - TSS region transcription start site region 122933
Tssr122934 13 60941916 to 60941923 7 - TSS region transcription start site region 122934
Tssr122935 13 60941932 to 60941939 7 - TSS region transcription start site region 122935
Tssr122936 13 60941944 to 60941945 1 - TSS region transcription start site region 122936
D13Mit318 13 60944485 to 60944607 122 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 318
Tssr120151 13 60955166 to 60955168 2 + TSS region transcription start site region 120151
Gm40975 13 60955219 to 60959948 4729 + lincRNA gene predicted gene, 40975
Gm40976 13 60962820 to 60962931 111 - lncRNA gene predicted gene, 40976
Ctsj 13 61000277 to 61005958 5681 - protein coding gene cathepsin J
Tssr120152 13 61003708 to 61003749 41 + TSS region transcription start site region 120152
Tssr120153 13 61004026 to 61004042 16 + TSS region transcription start site region 120153
Tssr122937 13 61005918 to 61005930 12 - TSS region transcription start site region 122937
Ctsq 13 61035038 to 61040597 5559 - protein coding gene cathepsin Q
Tssr122938 13 61037746 to 61037754 8 - TSS region transcription start site region 122938
Tssr120154 13 61039076 to 61039126 50 + TSS region transcription start site region 120154
Tssr122939 13 61040601 to 61040608 7 - TSS region transcription start site region 122939
Tssr122940 13 61040614 to 61040637 23 - TSS region transcription start site region 122940
Gm18064 13 61146195 to 61147543 1348 - pseudogene predicted gene, 18064
Ctsr 13 61159215 to 61164188 4973 - protein coding gene cathepsin R
Tssr122941 13 61164197 to 61164210 13 - TSS region transcription start site region 122941
Tssr122942 13 61164211 to 61164215 4 - TSS region transcription start site region 122942
Cts6 13 61195147 to 61203392 8245 - protein coding gene cathepsin 6
Tssr122943 13 61202189 to 61202227 38 - TSS region transcription start site region 122943
Tssr122944 13 61203406 to 61203418 12 - TSS region transcription start site region 122944
Tssr122945 13 61203428 to 61203430 2 - TSS region transcription start site region 122945
Cts8 13 61246747 to 61255348 8601 - protein coding gene cathepsin 8
Gm49398 13 61247878 to 61288839 40961 - protein coding gene predicted gene, 49398
Tssr122946 13 61255345 to 61255350 5 - TSS region transcription start site region 122946
Cts8-ps 13 61281380 to 61288850 7470 - pseudogene cathepsin 8, pseudogene
Gm5664 13 61298210 to 61303414 5204 - pseudogene predicted gene 5664
Gm27704 13 61336455 to 61336561 106 + miRNA gene predicted gene, 27704
Cts7 13 61352461 to 61358197 5736 - protein coding gene cathepsin 7
Tssr122947 13 61358193 to 61358198 5 - TSS region transcription start site region 122947
Cts7-ps 13 61435838 to 61438553 2715 - pseudogene cathepsin 7, pseudogene
Gm47825 13 61443965 to 61444195 230 + pseudogene predicted gene, 47825
Ctsm-ps2 13 61482408 to 61490329 7921 - pseudogene cathepsin M, pseudogene 2
Gm47848 13 61510288 to 61511518 1230 + pseudogene predicted gene, 47848
Gm7756 13 61531840 to 61532673 833 - pseudogene predicted gene 7756
Ctsm 13 61535743 to 61541839 6096 - protein coding gene cathepsin M
Gm49352 13 61538390 to 61568174 29784 - protein coding gene predicted gene, 49352
Tssr122948 13 61541828 to 61541842 14 - TSS region transcription start site region 122948
Tssr122949 13 61541892 to 61541900 8 - TSS region transcription start site region 122949
Cts3 13 61564630 to 61570127 5497 - protein coding gene cathepsin 3
Tssr122950 13 61567914 to 61567920 6 - TSS region transcription start site region 122950
Tssr122951 13 61570097 to 61570109 12 - TSS region transcription start site region 122951
Tssr122952 13 61570111 to 61570135 24 - TSS region transcription start site region 122952
Gm21933 13 61630023 to 61636282 6259 + protein coding gene predicted gene, 21933
Gm49357 13 61655303 to 61743770 88467 + lincRNA gene predicted gene, 49357
Gm20599 13 61655310 to 61700833 45523 + pseudogene predicted gene, 20599
Cpgi5755 13 61665811 to 61666207 396 CpG island CpG island 5755
Gm7622 13 61665941 to 61667140 1199 + pseudogene predicted pseudogene 7622
Gm6474 13 61687282 to 61687980 698 - pseudogene predicted gene 6474
Gm48116 13 61709556 to 61711238 1682 + lincRNA gene predicted gene, 48116
Gm6436 13 61710587 to 61711371 784 - pseudogene predicted gene 6436
Tssr120155 13 61712975 to 61712998 23 + TSS region transcription start site region 120155
Gm9595 13 61723588 to 61724331 743 + pseudogene predicted gene 9595
BC052688 13 61771580 to 61787282 15702 + pseudogene cDNA sequence BC052688
Selenok-ps4 13 61799903 to 61800179 276 + pseudogene selenoprotein K, pseudogene 4
Gm23739 13 61804141 to 61804248 107 - miRNA gene predicted gene, 23739
Gm7240 13 61804257 to 61861675 57418 + pseudogene predicted gene 7240
Tssr4099 13 61804272 to 61804308 36 + TSS region transcription start site region 4099
Gm24193 13 61823544 to 61823664 120 - miRNA gene predicted gene, 24193
Tssr120156 13 61827502 to 61827505 3 + TSS region transcription start site region 120156
Gm35619 13 61917549 to 61918148 599 + pseudogene predicted gene, 35619
Gm21935 13 61984004 to 61993289 9285 + pseudogene predicted gene, 21935
Tssr120157 13 61995287 to 61995297 10 + TSS region transcription start site region 120157
Tssr122953 13 61999542 to 61999545 3 - TSS region transcription start site region 122953
Gm48228 13 62006640 to 62126102 119462 - lincRNA gene predicted gene, 48228
Selenok-ps8 13 62006668 to 62006947 279 + pseudogene selenoprotein K, pseudogene 8
Gm25649 13 62013035 to 62013144 109 - miRNA gene predicted gene, 25649
Gm3325 13 62015605 to 62050986 35381 + protein coding gene predicted gene 3325
Tssr120158 13 62015918 to 62015960 42 + TSS region transcription start site region 120158
Cpgi5756 13 62015949 to 62016170 221 CpG island CpG island 5756
Gm6478 13 62035422 to 62036163 741 + pseudogene predicted pseudogene 6478
Gm40977 13 62102690 to 62112031 9341 + pseudogene predicted gene, 40977