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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:60453086-61403184

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48500 13 60463586 to 60481298 17712 - lincRNA gene predicted gene, 48500
D13Mit43 13 60466446 to 60466577 131 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 43
Tssr122907 13 60480362 to 60480371 9 - TSS region transcription start site region 122907
A530001N23Rik 13 60483504 to 60488808 5304 - lincRNA gene RIKEN cDNA A530001N23 gene
Tssr122908 13 60508785 to 60508820 35 - TSS region transcription start site region 122908
Gm25000 13 60529296 to 60529409 113 - miRNA gene predicted gene, 25000
Gm40974 13 60601110 to 60602485 1375 - lncRNA gene predicted gene, 40974
Cpgi5753 13 60601553 to 60602819 1266 CpG island CpG island 5753
Tssr120113 13 60601695 to 60601704 9 + TSS region transcription start site region 120113
Tssr120114 13 60601743 to 60601754 11 + TSS region transcription start site region 120114
Tssr120115 13 60601774 to 60601788 14 + TSS region transcription start site region 120115
Tssr120116 13 60601921 to 60602039 118 + TSS region transcription start site region 120116
Dapk1 13 60601947 to 60763191 161244 + protein coding gene death associated protein kinase 1
Tssr120117 13 60602182 to 60602231 49 + TSS region transcription start site region 120117
Tssr4096 13 60602555 to 60602576 21 - TSS region transcription start site region 4096
Tssr122909 13 60602584 to 60602596 12 - TSS region transcription start site region 122909
Tssr120118 13 60603589 to 60603600 11 + TSS region transcription start site region 120118
Tssr4097 13 60606963 to 60606968 5 + TSS region transcription start site region 4097
Tssr120119 13 60608464 to 60608467 3 + TSS region transcription start site region 120119
Tssr120120 13 60610555 to 60610559 4 + TSS region transcription start site region 120120
Tssr120121 13 60613809 to 60613815 6 + TSS region transcription start site region 120121
Gm48582 13 60622967 to 60629395 6428 + unclassified gene predicted gene, 48582
Tssr122910 13 60624172 to 60624175 3 - TSS region transcription start site region 122910
Tssr120122 13 60636541 to 60636555 14 + TSS region transcription start site region 120122
Tssr120123 13 60640999 to 60641008 9 + TSS region transcription start site region 120123
Tssr120124 13 60641015 to 60641019 4 + TSS region transcription start site region 120124
Gm48583 13 60641790 to 60642009 219 + pseudogene predicted gene, 48583
Tssr120125 13 60646909 to 60646925 16 + TSS region transcription start site region 120125
Tssr120126 13 60647506 to 60647510 4 + TSS region transcription start site region 120126
Tssr120127 13 60647756 to 60647771 15 + TSS region transcription start site region 120127
Tssr122911 13 60672853 to 60672879 26 - TSS region transcription start site region 122911
Tssr120128 13 60672991 to 60673004 13 + TSS region transcription start site region 120128
Gm35540 13 60685966 to 60688276 2310 + lncRNA gene predicted gene, 35540
Tssr120129 13 60729380 to 60729385 5 + TSS region transcription start site region 120129
Tssr120130 13 60733825 to 60733842 17 + TSS region transcription start site region 120130
D13Mit209 13 60737260 to 60737389 129 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 209
Tssr120131 13 60738151 to 60738162 11 + TSS region transcription start site region 120131
Tssr120132 13 60739932 to 60739946 14 + TSS region transcription start site region 120132
Tssr120133 13 60751812 to 60751828 16 + TSS region transcription start site region 120133
Cpgi5754 13 60761044 to 60761217 173 CpG island CpG island 5754
Tssr120134 13 60761927 to 60761942 15 + TSS region transcription start site region 120134
Tssr120135 13 60762467 to 60762482 15 + TSS region transcription start site region 120135
Tssr120136 13 60762512 to 60762527 15 + TSS region transcription start site region 120136
Tssr120137 13 60762547 to 60762587 40 + TSS region transcription start site region 120137
Gm10312 13 60771675 to 60772163 488 + pseudogene predicted gene 10312
BC051665 13 60781887 to 60786364 4477 - protein coding gene cDNA sequence BC051665
Ctsll3 13 60798250 to 60802844 4594 - protein coding gene cathepsin L-like 3
4930486L24Rik 13 60842612 to 60864416 21804 - protein coding gene RIKEN cDNA 4930486L24 gene
Gm49392 13 60842621 to 60896894 54273 - protein coding gene predicted gene, 49392
Tssr122912 13 60843017 to 60843032 15 - TSS region transcription start site region 122912
Tssr122913 13 60848857 to 60848869 12 - TSS region transcription start site region 122913
Gm49393 13 60853230 to 60935590 82360 - protein coding gene predicted gene, 49393
Tssr122914 13 60864373 to 60864437 64 - TSS region transcription start site region 122914
Gm49391 13 60895350 to 60936571 41221 - protein coding gene predicted gene, 49391
Ctla2b 13 60895350 to 60897447 2097 - protein coding gene cytotoxic T lymphocyte-associated protein 2 beta
Tssr4098 13 60895606 to 60895646 40 - TSS region transcription start site region 4098
Tssr122915 13 60897397 to 60897414 17 - TSS region transcription start site region 122915
Tssr122916 13 60897425 to 60897430 5 - TSS region transcription start site region 122916
Tssr122917 13 60897439 to 60897455 16 - TSS region transcription start site region 122917
Tpbpb 13 60901295 to 60904847 3552 - protein coding gene trophoblast specific protein beta
Tssr122918 13 60901353 to 60901362 9 - TSS region transcription start site region 122918
Tssr120138 13 60902101 to 60902106 5 + TSS region transcription start site region 120138
Tssr120139 13 60902127 to 60902142 15 + TSS region transcription start site region 120139
Tssr120140 13 60902526 to 60902542 16 + TSS region transcription start site region 120140
Tssr122919 13 60902588 to 60902602 14 - TSS region transcription start site region 122919
Tssr122920 13 60904839 to 60904851 12 - TSS region transcription start site region 122920
Tssr122921 13 60905120 to 60905133 13 - TSS region transcription start site region 122921
Tssr120141 13 60928082 to 60928088 6 + TSS region transcription start site region 120141
Gm24594 13 60928086 to 60928184 98 + snRNA gene predicted gene, 24594
Ctla2a 13 60934155 to 60936625 2470 - protein coding gene cytotoxic T lymphocyte-associated protein 2 alpha
Tssr120142 13 60934771 to 60934778 7 + TSS region transcription start site region 120142
Tssr122922 13 60934800 to 60934811 11 - TSS region transcription start site region 122922
Tssr122923 13 60934815 to 60934825 10 - TSS region transcription start site region 122923
Tssr120143 13 60935627 to 60935640 13 + TSS region transcription start site region 120143
Tssr122924 13 60936443 to 60936471 28 - TSS region transcription start site region 122924
Tssr122925 13 60936550 to 60936569 19 - TSS region transcription start site region 122925
Tssr122926 13 60936782 to 60936787 5 - TSS region transcription start site region 122926
Tpbpa 13 60938692 to 60941935 3243 - protein coding gene trophoblast specific protein alpha
Tssr122927 13 60939406 to 60939415 9 - TSS region transcription start site region 122927
Tssr122928 13 60939429 to 60939434 5 - TSS region transcription start site region 122928
Tssr120144 13 60939457 to 60939472 15 + TSS region transcription start site region 120144
Tssr120145 13 60939559 to 60939584 25 + TSS region transcription start site region 120145
Tssr120146 13 60939965 to 60939969 4 + TSS region transcription start site region 120146
Tssr120147 13 60939977 to 60939997 20 + TSS region transcription start site region 120147
Tssr122929 13 60939989 to 60939995 6 - TSS region transcription start site region 122929
Tssr120148 13 60940181 to 60940190 9 + TSS region transcription start site region 120148
Tssr122930 13 60940183 to 60940191 8 - TSS region transcription start site region 122930
Tssr120149 13 60940212 to 60940223 11 + TSS region transcription start site region 120149
Tssr122931 13 60940226 to 60940233 7 - TSS region transcription start site region 122931
Tssr120150 13 60940229 to 60940230 1 + TSS region transcription start site region 120150
Tssr122932 13 60940234 to 60940246 12 - TSS region transcription start site region 122932
Tssr122933 13 60940633 to 60940653 20 - TSS region transcription start site region 122933
Tssr122934 13 60941916 to 60941923 7 - TSS region transcription start site region 122934
Tssr122935 13 60941932 to 60941939 7 - TSS region transcription start site region 122935
Tssr122936 13 60941944 to 60941945 1 - TSS region transcription start site region 122936
D13Mit318 13 60944485 to 60944607 122 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 318
Tssr120151 13 60955166 to 60955168 2 + TSS region transcription start site region 120151
Gm40975 13 60955219 to 60959948 4729 + lincRNA gene predicted gene, 40975
Gm40976 13 60962820 to 60962931 111 - lncRNA gene predicted gene, 40976
Ctsj 13 61000277 to 61005958 5681 - protein coding gene cathepsin J
Tssr120152 13 61003708 to 61003749 41 + TSS region transcription start site region 120152
Tssr120153 13 61004026 to 61004042 16 + TSS region transcription start site region 120153
Tssr122937 13 61005918 to 61005930 12 - TSS region transcription start site region 122937
Ctsq 13 61035038 to 61040597 5559 - protein coding gene cathepsin Q
Tssr122938 13 61037746 to 61037754 8 - TSS region transcription start site region 122938
Tssr120154 13 61039076 to 61039126 50 + TSS region transcription start site region 120154
Tssr122939 13 61040601 to 61040608 7 - TSS region transcription start site region 122939
Tssr122940 13 61040614 to 61040637 23 - TSS region transcription start site region 122940
Gm18064 13 61146195 to 61147543 1348 - pseudogene predicted gene, 18064
Ctsr 13 61159215 to 61164188 4973 - protein coding gene cathepsin R
Tssr122941 13 61164197 to 61164210 13 - TSS region transcription start site region 122941
Tssr122942 13 61164211 to 61164215 4 - TSS region transcription start site region 122942
Cts6 13 61195147 to 61203392 8245 - protein coding gene cathepsin 6
Tssr122943 13 61202189 to 61202227 38 - TSS region transcription start site region 122943
Tssr122944 13 61203406 to 61203418 12 - TSS region transcription start site region 122944
Tssr122945 13 61203428 to 61203430 2 - TSS region transcription start site region 122945
Cts8 13 61246747 to 61255348 8601 - protein coding gene cathepsin 8
Gm49398 13 61247878 to 61288839 40961 - protein coding gene predicted gene, 49398
Tssr122946 13 61255345 to 61255350 5 - TSS region transcription start site region 122946
Cts8-ps 13 61281380 to 61288850 7470 - pseudogene cathepsin 8, pseudogene
Gm5664 13 61298210 to 61303414 5204 - pseudogene predicted gene 5664
Gm27704 13 61336455 to 61336561 106 + miRNA gene predicted gene, 27704
Cts7 13 61352461 to 61358197 5736 - protein coding gene cathepsin 7
Tssr122947 13 61358193 to 61358198 5 - TSS region transcription start site region 122947