Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:60296553-60907819

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm10779 13 60331449 to 60333751 2302 + protein coding gene predicted gene 10779
D13Jpk1 13 60362758 to 60362872 114 DNA segment DNA segment, Chr 13, Japan, Kominami 1
Gm35333 13 60422756 to 60434731 11975 - lincRNA gene predicted gene, 35333
Gm48500 13 60463586 to 60481298 17712 - lincRNA gene predicted gene, 48500
D13Mit43 13 60466446 to 60466577 131 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 43
Tssr122907 13 60480362 to 60480371 9 - TSS region transcription start site region 122907
A530001N23Rik 13 60483504 to 60488808 5304 - lincRNA gene RIKEN cDNA A530001N23 gene
Tssr122908 13 60508785 to 60508820 35 - TSS region transcription start site region 122908
Gm25000 13 60529296 to 60529409 113 - miRNA gene predicted gene, 25000
Gm40974 13 60601110 to 60602485 1375 - lncRNA gene predicted gene, 40974
Cpgi5753 13 60601553 to 60602819 1266 CpG island CpG island 5753
Tssr120113 13 60601695 to 60601704 9 + TSS region transcription start site region 120113
Tssr120114 13 60601743 to 60601754 11 + TSS region transcription start site region 120114
Tssr120115 13 60601774 to 60601788 14 + TSS region transcription start site region 120115
Tssr120116 13 60601921 to 60602039 118 + TSS region transcription start site region 120116
Dapk1 13 60601947 to 60763191 161244 + protein coding gene death associated protein kinase 1
Tssr120117 13 60602182 to 60602231 49 + TSS region transcription start site region 120117
Tssr4096 13 60602555 to 60602576 21 - TSS region transcription start site region 4096
Tssr122909 13 60602584 to 60602596 12 - TSS region transcription start site region 122909
Tssr120118 13 60603589 to 60603600 11 + TSS region transcription start site region 120118
Tssr4097 13 60606963 to 60606968 5 + TSS region transcription start site region 4097
Tssr120119 13 60608464 to 60608467 3 + TSS region transcription start site region 120119
Tssr120120 13 60610555 to 60610559 4 + TSS region transcription start site region 120120
Tssr120121 13 60613809 to 60613815 6 + TSS region transcription start site region 120121
Gm48582 13 60622967 to 60629395 6428 + unclassified gene predicted gene, 48582
Tssr122910 13 60624172 to 60624175 3 - TSS region transcription start site region 122910
Tssr120122 13 60636541 to 60636555 14 + TSS region transcription start site region 120122
Tssr120123 13 60640999 to 60641008 9 + TSS region transcription start site region 120123
Tssr120124 13 60641015 to 60641019 4 + TSS region transcription start site region 120124
Gm48583 13 60641790 to 60642009 219 + pseudogene predicted gene, 48583
Tssr120125 13 60646909 to 60646925 16 + TSS region transcription start site region 120125
Tssr120126 13 60647506 to 60647510 4 + TSS region transcription start site region 120126
Tssr120127 13 60647756 to 60647771 15 + TSS region transcription start site region 120127
Tssr122911 13 60672853 to 60672879 26 - TSS region transcription start site region 122911
Tssr120128 13 60672991 to 60673004 13 + TSS region transcription start site region 120128
Gm35540 13 60685966 to 60688276 2310 + lncRNA gene predicted gene, 35540
Tssr120129 13 60729380 to 60729385 5 + TSS region transcription start site region 120129
Tssr120130 13 60733825 to 60733842 17 + TSS region transcription start site region 120130
D13Mit209 13 60737260 to 60737389 129 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 209
Tssr120131 13 60738151 to 60738162 11 + TSS region transcription start site region 120131
Tssr120132 13 60739932 to 60739946 14 + TSS region transcription start site region 120132
Tssr120133 13 60751812 to 60751828 16 + TSS region transcription start site region 120133
Cpgi5754 13 60761044 to 60761217 173 CpG island CpG island 5754
Tssr120134 13 60761927 to 60761942 15 + TSS region transcription start site region 120134
Tssr120135 13 60762467 to 60762482 15 + TSS region transcription start site region 120135
Tssr120136 13 60762512 to 60762527 15 + TSS region transcription start site region 120136
Tssr120137 13 60762547 to 60762587 40 + TSS region transcription start site region 120137
Gm10312 13 60771675 to 60772163 488 + pseudogene predicted gene 10312
BC051665 13 60781887 to 60786364 4477 - protein coding gene cDNA sequence BC051665
Ctsll3 13 60798250 to 60802844 4594 - protein coding gene cathepsin L-like 3
4930486L24Rik 13 60842612 to 60864416 21804 - protein coding gene RIKEN cDNA 4930486L24 gene
Gm49392 13 60842621 to 60896894 54273 - protein coding gene predicted gene, 49392
Tssr122912 13 60843017 to 60843032 15 - TSS region transcription start site region 122912
Tssr122913 13 60848857 to 60848869 12 - TSS region transcription start site region 122913
Gm49393 13 60853230 to 60935590 82360 - protein coding gene predicted gene, 49393
Tssr122914 13 60864373 to 60864437 64 - TSS region transcription start site region 122914
Gm49391 13 60895350 to 60936571 41221 - protein coding gene predicted gene, 49391
Ctla2b 13 60895350 to 60897447 2097 - protein coding gene cytotoxic T lymphocyte-associated protein 2 beta
Tssr4098 13 60895606 to 60895646 40 - TSS region transcription start site region 4098
Tssr122915 13 60897397 to 60897414 17 - TSS region transcription start site region 122915
Tssr122916 13 60897425 to 60897430 5 - TSS region transcription start site region 122916
Tssr122917 13 60897439 to 60897455 16 - TSS region transcription start site region 122917
Tpbpb 13 60901295 to 60904847 3552 - protein coding gene trophoblast specific protein beta
Tssr122918 13 60901353 to 60901362 9 - TSS region transcription start site region 122918
Tssr120138 13 60902101 to 60902106 5 + TSS region transcription start site region 120138
Tssr120139 13 60902127 to 60902142 15 + TSS region transcription start site region 120139
Tssr120140 13 60902526 to 60902542 16 + TSS region transcription start site region 120140
Tssr122919 13 60902588 to 60902602 14 - TSS region transcription start site region 122919
Tssr122920 13 60904839 to 60904851 12 - TSS region transcription start site region 122920
Tssr122921 13 60905120 to 60905133 13 - TSS region transcription start site region 122921