Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:60174076-61904126

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gas1 13 60174405 to 60177365 2960 - protein coding gene growth arrest specific 1
Tssr122895 13 60174869 to 60174888 19 - TSS region transcription start site region 122895
Tssr122896 13 60174987 to 60174997 10 - TSS region transcription start site region 122896
Tssr122897 13 60175024 to 60175038 14 - TSS region transcription start site region 122897
Tssr122898 13 60175206 to 60175224 18 - TSS region transcription start site region 122898
Cpgi5749 13 60175519 to 60177839 2320 CpG island CpG island 5749
Tssr122899 13 60176049 to 60176053 4 - TSS region transcription start site region 122899
Tssr122900 13 60176547 to 60176564 17 - TSS region transcription start site region 122900
Gm48488 13 60176682 to 60182862 6180 + lincRNA gene predicted gene, 48488
Tssr122901 13 60177064 to 60177083 19 - TSS region transcription start site region 122901
Tssr122902 13 60177118 to 60177148 30 - TSS region transcription start site region 122902
Tssr122903 13 60177166 to 60177202 36 - TSS region transcription start site region 122903
Tssr122904 13 60177357 to 60177373 16 - TSS region transcription start site region 122904
Tssr122905 13 60177392 to 60177399 7 - TSS region transcription start site region 122905
Tssr122906 13 60177498 to 60177574 76 - TSS region transcription start site region 122906
Cpgi5750 13 60179333 to 60179828 495 CpG island CpG island 5750
Gm5084 13 60205471 to 60216018 10547 + lincRNA gene predicted gene 5084
Cpgi5751 13 60205925 to 60206142 217 CpG island CpG island 5751
Cpgi5752 13 60248535 to 60248708 173 CpG island CpG island 5752
Tssr120112 13 60248564 to 60248567 3 + TSS region transcription start site region 120112
Gm19249 13 60248566 to 60249006 440 + pseudogene predicted gene, 19249
Gm24999 13 60293672 to 60293772 100 + miRNA gene predicted gene, 24999
Gm10779 13 60331449 to 60333751 2302 + protein coding gene predicted gene 10779
D13Jpk1 13 60362758 to 60362872 114 DNA segment DNA segment, Chr 13, Japan, Kominami 1
Gm35333 13 60422756 to 60434731 11975 - lincRNA gene predicted gene, 35333
Gm48500 13 60463586 to 60481298 17712 - lincRNA gene predicted gene, 48500
D13Mit43 13 60466446 to 60466577 131 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 43
Tssr122907 13 60480362 to 60480371 9 - TSS region transcription start site region 122907
A530001N23Rik 13 60483504 to 60488808 5304 - lincRNA gene RIKEN cDNA A530001N23 gene
Tssr122908 13 60508785 to 60508820 35 - TSS region transcription start site region 122908
Gm25000 13 60529296 to 60529409 113 - miRNA gene predicted gene, 25000
Gm40974 13 60601110 to 60602485 1375 - lncRNA gene predicted gene, 40974
Cpgi5753 13 60601553 to 60602819 1266 CpG island CpG island 5753
Tssr120113 13 60601695 to 60601704 9 + TSS region transcription start site region 120113
Tssr120114 13 60601743 to 60601754 11 + TSS region transcription start site region 120114
Tssr120115 13 60601774 to 60601788 14 + TSS region transcription start site region 120115
Tssr120116 13 60601921 to 60602039 118 + TSS region transcription start site region 120116
Dapk1 13 60601947 to 60763191 161244 + protein coding gene death associated protein kinase 1
Tssr120117 13 60602182 to 60602231 49 + TSS region transcription start site region 120117
Tssr4096 13 60602555 to 60602576 21 - TSS region transcription start site region 4096
Tssr122909 13 60602584 to 60602596 12 - TSS region transcription start site region 122909
Tssr120118 13 60603589 to 60603600 11 + TSS region transcription start site region 120118
Tssr4097 13 60606963 to 60606968 5 + TSS region transcription start site region 4097
Tssr120119 13 60608464 to 60608467 3 + TSS region transcription start site region 120119
Tssr120120 13 60610555 to 60610559 4 + TSS region transcription start site region 120120
Tssr120121 13 60613809 to 60613815 6 + TSS region transcription start site region 120121
Gm48582 13 60622967 to 60629395 6428 + unclassified gene predicted gene, 48582
Tssr122910 13 60624172 to 60624175 3 - TSS region transcription start site region 122910
Tssr120122 13 60636541 to 60636555 14 + TSS region transcription start site region 120122
Tssr120123 13 60640999 to 60641008 9 + TSS region transcription start site region 120123
Tssr120124 13 60641015 to 60641019 4 + TSS region transcription start site region 120124
Gm48583 13 60641790 to 60642009 219 + pseudogene predicted gene, 48583
Tssr120125 13 60646909 to 60646925 16 + TSS region transcription start site region 120125
Tssr120126 13 60647506 to 60647510 4 + TSS region transcription start site region 120126
Tssr120127 13 60647756 to 60647771 15 + TSS region transcription start site region 120127
Tssr122911 13 60672853 to 60672879 26 - TSS region transcription start site region 122911
Tssr120128 13 60672991 to 60673004 13 + TSS region transcription start site region 120128
Gm35540 13 60685966 to 60688276 2310 + lncRNA gene predicted gene, 35540
Tssr120129 13 60729380 to 60729385 5 + TSS region transcription start site region 120129
Tssr120130 13 60733825 to 60733842 17 + TSS region transcription start site region 120130
D13Mit209 13 60737260 to 60737389 129 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 209
Tssr120131 13 60738151 to 60738162 11 + TSS region transcription start site region 120131
Tssr120132 13 60739932 to 60739946 14 + TSS region transcription start site region 120132
Tssr120133 13 60751812 to 60751828 16 + TSS region transcription start site region 120133
Cpgi5754 13 60761044 to 60761217 173 CpG island CpG island 5754
Tssr120134 13 60761927 to 60761942 15 + TSS region transcription start site region 120134
Tssr120135 13 60762467 to 60762482 15 + TSS region transcription start site region 120135
Tssr120136 13 60762512 to 60762527 15 + TSS region transcription start site region 120136
Tssr120137 13 60762547 to 60762587 40 + TSS region transcription start site region 120137
Gm10312 13 60771675 to 60772163 488 + pseudogene predicted gene 10312
BC051665 13 60781887 to 60786364 4477 - protein coding gene cDNA sequence BC051665
Ctsll3 13 60798250 to 60802844 4594 - protein coding gene cathepsin L-like 3
4930486L24Rik 13 60842612 to 60864416 21804 - protein coding gene RIKEN cDNA 4930486L24 gene
Gm49392 13 60842621 to 60896894 54273 - protein coding gene predicted gene, 49392
Tssr122912 13 60843017 to 60843032 15 - TSS region transcription start site region 122912
Tssr122913 13 60848857 to 60848869 12 - TSS region transcription start site region 122913
Gm49393 13 60853230 to 60935590 82360 - protein coding gene predicted gene, 49393
Tssr122914 13 60864373 to 60864437 64 - TSS region transcription start site region 122914
Gm49391 13 60895350 to 60936571 41221 - protein coding gene predicted gene, 49391
Ctla2b 13 60895350 to 60897447 2097 - protein coding gene cytotoxic T lymphocyte-associated protein 2 beta
Tssr4098 13 60895606 to 60895646 40 - TSS region transcription start site region 4098
Tssr122915 13 60897397 to 60897414 17 - TSS region transcription start site region 122915
Tssr122916 13 60897425 to 60897430 5 - TSS region transcription start site region 122916
Tssr122917 13 60897439 to 60897455 16 - TSS region transcription start site region 122917
Tpbpb 13 60901295 to 60904847 3552 - protein coding gene trophoblast specific protein beta
Tssr122918 13 60901353 to 60901362 9 - TSS region transcription start site region 122918
Tssr120138 13 60902101 to 60902106 5 + TSS region transcription start site region 120138
Tssr120139 13 60902127 to 60902142 15 + TSS region transcription start site region 120139
Tssr120140 13 60902526 to 60902542 16 + TSS region transcription start site region 120140
Tssr122919 13 60902588 to 60902602 14 - TSS region transcription start site region 122919
Tssr122920 13 60904839 to 60904851 12 - TSS region transcription start site region 122920
Tssr122921 13 60905120 to 60905133 13 - TSS region transcription start site region 122921
Tssr120141 13 60928082 to 60928088 6 + TSS region transcription start site region 120141
Gm24594 13 60928086 to 60928184 98 + snRNA gene predicted gene, 24594
Ctla2a 13 60934155 to 60936625 2470 - protein coding gene cytotoxic T lymphocyte-associated protein 2 alpha
Tssr120142 13 60934771 to 60934778 7 + TSS region transcription start site region 120142
Tssr122922 13 60934800 to 60934811 11 - TSS region transcription start site region 122922
Tssr122923 13 60934815 to 60934825 10 - TSS region transcription start site region 122923
Tssr120143 13 60935627 to 60935640 13 + TSS region transcription start site region 120143
Tssr122924 13 60936443 to 60936471 28 - TSS region transcription start site region 122924
Tssr122925 13 60936550 to 60936569 19 - TSS region transcription start site region 122925
Tssr122926 13 60936782 to 60936787 5 - TSS region transcription start site region 122926
Tpbpa 13 60938692 to 60941935 3243 - protein coding gene trophoblast specific protein alpha
Tssr122927 13 60939406 to 60939415 9 - TSS region transcription start site region 122927
Tssr122928 13 60939429 to 60939434 5 - TSS region transcription start site region 122928
Tssr120144 13 60939457 to 60939472 15 + TSS region transcription start site region 120144
Tssr120145 13 60939559 to 60939584 25 + TSS region transcription start site region 120145
Tssr120146 13 60939965 to 60939969 4 + TSS region transcription start site region 120146
Tssr120147 13 60939977 to 60939997 20 + TSS region transcription start site region 120147
Tssr122929 13 60939989 to 60939995 6 - TSS region transcription start site region 122929
Tssr120148 13 60940181 to 60940190 9 + TSS region transcription start site region 120148
Tssr122930 13 60940183 to 60940191 8 - TSS region transcription start site region 122930
Tssr120149 13 60940212 to 60940223 11 + TSS region transcription start site region 120149
Tssr122931 13 60940226 to 60940233 7 - TSS region transcription start site region 122931
Tssr120150 13 60940229 to 60940230 1 + TSS region transcription start site region 120150
Tssr122932 13 60940234 to 60940246 12 - TSS region transcription start site region 122932
Tssr122933 13 60940633 to 60940653 20 - TSS region transcription start site region 122933
Tssr122934 13 60941916 to 60941923 7 - TSS region transcription start site region 122934
Tssr122935 13 60941932 to 60941939 7 - TSS region transcription start site region 122935
Tssr122936 13 60941944 to 60941945 1 - TSS region transcription start site region 122936
D13Mit318 13 60944485 to 60944607 122 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 318
Tssr120151 13 60955166 to 60955168 2 + TSS region transcription start site region 120151
Gm40975 13 60955219 to 60959948 4729 + lincRNA gene predicted gene, 40975
Gm40976 13 60962820 to 60962931 111 - lncRNA gene predicted gene, 40976
Ctsj 13 61000277 to 61005958 5681 - protein coding gene cathepsin J
Tssr120152 13 61003708 to 61003749 41 + TSS region transcription start site region 120152
Tssr120153 13 61004026 to 61004042 16 + TSS region transcription start site region 120153
Tssr122937 13 61005918 to 61005930 12 - TSS region transcription start site region 122937
Ctsq 13 61035038 to 61040597 5559 - protein coding gene cathepsin Q
Tssr122938 13 61037746 to 61037754 8 - TSS region transcription start site region 122938
Tssr120154 13 61039076 to 61039126 50 + TSS region transcription start site region 120154
Tssr122939 13 61040601 to 61040608 7 - TSS region transcription start site region 122939
Tssr122940 13 61040614 to 61040637 23 - TSS region transcription start site region 122940
Gm18064 13 61146195 to 61147543 1348 - pseudogene predicted gene, 18064
Ctsr 13 61159215 to 61164188 4973 - protein coding gene cathepsin R
Tssr122941 13 61164197 to 61164210 13 - TSS region transcription start site region 122941
Tssr122942 13 61164211 to 61164215 4 - TSS region transcription start site region 122942
Cts6 13 61195147 to 61203392 8245 - protein coding gene cathepsin 6
Tssr122943 13 61202189 to 61202227 38 - TSS region transcription start site region 122943
Tssr122944 13 61203406 to 61203418 12 - TSS region transcription start site region 122944
Tssr122945 13 61203428 to 61203430 2 - TSS region transcription start site region 122945
Cts8 13 61246747 to 61255348 8601 - protein coding gene cathepsin 8
Gm49398 13 61247878 to 61288839 40961 - protein coding gene predicted gene, 49398
Tssr122946 13 61255345 to 61255350 5 - TSS region transcription start site region 122946
Cts8-ps 13 61281380 to 61288850 7470 - pseudogene cathepsin 8, pseudogene
Gm5664 13 61298210 to 61303414 5204 - pseudogene predicted gene 5664
Gm27704 13 61336455 to 61336561 106 + miRNA gene predicted gene, 27704
Cts7 13 61352461 to 61358197 5736 - protein coding gene cathepsin 7
Tssr122947 13 61358193 to 61358198 5 - TSS region transcription start site region 122947
Cts7-ps 13 61435838 to 61438553 2715 - pseudogene cathepsin 7, pseudogene
Gm47825 13 61443965 to 61444195 230 + pseudogene predicted gene, 47825
Ctsm-ps2 13 61482408 to 61490329 7921 - pseudogene cathepsin M, pseudogene 2
Gm47848 13 61510288 to 61511518 1230 + pseudogene predicted gene, 47848
Gm7756 13 61531840 to 61532673 833 - pseudogene predicted gene 7756
Ctsm 13 61535743 to 61541839 6096 - protein coding gene cathepsin M
Gm49352 13 61538390 to 61568174 29784 - protein coding gene predicted gene, 49352
Tssr122948 13 61541828 to 61541842 14 - TSS region transcription start site region 122948
Tssr122949 13 61541892 to 61541900 8 - TSS region transcription start site region 122949
Cts3 13 61564630 to 61570127 5497 - protein coding gene cathepsin 3
Tssr122950 13 61567914 to 61567920 6 - TSS region transcription start site region 122950
Tssr122951 13 61570097 to 61570109 12 - TSS region transcription start site region 122951
Tssr122952 13 61570111 to 61570135 24 - TSS region transcription start site region 122952
Gm21933 13 61630023 to 61636282 6259 + protein coding gene predicted gene, 21933
Gm49357 13 61655303 to 61743770 88467 + lincRNA gene predicted gene, 49357
Gm20599 13 61655310 to 61700833 45523 + pseudogene predicted gene, 20599
Cpgi5755 13 61665811 to 61666207 396 CpG island CpG island 5755
Gm7622 13 61665941 to 61667140 1199 + pseudogene predicted pseudogene 7622
Gm6474 13 61687282 to 61687980 698 - pseudogene predicted gene 6474
Gm48116 13 61709556 to 61711238 1682 + lincRNA gene predicted gene, 48116
Gm6436 13 61710587 to 61711371 784 - pseudogene predicted gene 6436
Tssr120155 13 61712975 to 61712998 23 + TSS region transcription start site region 120155
Gm9595 13 61723588 to 61724331 743 + pseudogene predicted gene 9595
BC052688 13 61771580 to 61787282 15702 + pseudogene cDNA sequence BC052688
Selenok-ps4 13 61799903 to 61800179 276 + pseudogene selenoprotein K, pseudogene 4
Gm23739 13 61804141 to 61804248 107 - miRNA gene predicted gene, 23739
Gm7240 13 61804257 to 61861675 57418 + pseudogene predicted gene 7240
Tssr4099 13 61804272 to 61804308 36 + TSS region transcription start site region 4099
Gm24193 13 61823544 to 61823664 120 - miRNA gene predicted gene, 24193
Tssr120156 13 61827502 to 61827505 3 + TSS region transcription start site region 120156