Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:59838564-60658567

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5745 13 59839146 to 59839427 281 CpG island CpG island 5745
D13Mit122 13 59850190 to 59850337 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 122
Gm48384 13 59873642 to 59874964 1322 + lincRNA gene predicted gene, 48384
Tssr120108 13 59876045 to 59876056 11 + TSS region transcription start site region 120108
Gm19866 13 59901233 to 59915822 14589 - lincRNA gene predicted gene, 19866
Gm48390 13 59919438 to 59920340 902 + pseudogene predicted gene, 48390
D13Mit141 13 59977031 to 59977133 102 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 141
Gm35143 13 59990668 to 59998541 7873 + lncRNA gene predicted gene, 35143
D13Mit157 13 60001369 to 60001510 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 157
C77681 13 60015566 to 60016152 586 unclassified gene expressed sequence C77681
Tssr120109 13 60029622 to 60029629 7 + TSS region transcription start site region 120109
Tssr120110 13 60029673 to 60029693 20 + TSS region transcription start site region 120110
Tssr120111 13 60029704 to 60029709 5 + TSS region transcription start site region 120111
A530065N20Rik 13 60029711 to 60116669 86958 + lincRNA gene RIKEN cDNA A530046M15 gene
Gm35193 13 60041125 to 60044998 3873 - lncRNA gene predicted gene, 35193
Gm48396 13 60053684 to 60057625 3941 - lincRNA gene predicted gene, 48396
Gm48397 13 60068641 to 60074017 5376 + lincRNA gene predicted gene, 48397
Gm46420 13 60114526 to 60126416 11890 - lncRNA gene predicted gene, 46420
Cpgi5746 13 60126269 to 60126662 393 CpG island CpG island 5746
Cpgi5747 13 60131873 to 60132032 159 CpG island CpG island 5747
Cpgi5748 13 60147388 to 60147574 186 CpG island CpG island 5748
Gas1 13 60174405 to 60177365 2960 - protein coding gene growth arrest specific 1
Tssr122895 13 60174869 to 60174888 19 - TSS region transcription start site region 122895
Tssr122896 13 60174987 to 60174997 10 - TSS region transcription start site region 122896
Tssr122897 13 60175024 to 60175038 14 - TSS region transcription start site region 122897
Tssr122898 13 60175206 to 60175224 18 - TSS region transcription start site region 122898
Cpgi5749 13 60175519 to 60177839 2320 CpG island CpG island 5749
Tssr122899 13 60176049 to 60176053 4 - TSS region transcription start site region 122899
Tssr122900 13 60176547 to 60176564 17 - TSS region transcription start site region 122900
Gm48488 13 60176682 to 60182862 6180 + lincRNA gene predicted gene, 48488
Tssr122901 13 60177064 to 60177083 19 - TSS region transcription start site region 122901
Tssr122902 13 60177118 to 60177148 30 - TSS region transcription start site region 122902
Tssr122903 13 60177166 to 60177202 36 - TSS region transcription start site region 122903
Tssr122904 13 60177357 to 60177373 16 - TSS region transcription start site region 122904
Tssr122905 13 60177392 to 60177399 7 - TSS region transcription start site region 122905
Tssr122906 13 60177498 to 60177574 76 - TSS region transcription start site region 122906
Cpgi5750 13 60179333 to 60179828 495 CpG island CpG island 5750
Gm5084 13 60205471 to 60216018 10547 + lincRNA gene predicted gene 5084
Cpgi5751 13 60205925 to 60206142 217 CpG island CpG island 5751
Cpgi5752 13 60248535 to 60248708 173 CpG island CpG island 5752
Tssr120112 13 60248564 to 60248567 3 + TSS region transcription start site region 120112
Gm19249 13 60248566 to 60249006 440 + pseudogene predicted gene, 19249
Gm24999 13 60293672 to 60293772 100 + miRNA gene predicted gene, 24999
Gm10779 13 60331449 to 60333751 2302 + protein coding gene predicted gene 10779
D13Jpk1 13 60362758 to 60362872 114 DNA segment DNA segment, Chr 13, Japan, Kominami 1
Gm35333 13 60422756 to 60434731 11975 - lincRNA gene predicted gene, 35333
Gm48500 13 60463586 to 60481298 17712 - lincRNA gene predicted gene, 48500
D13Mit43 13 60466446 to 60466577 131 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 43
Tssr122907 13 60480362 to 60480371 9 - TSS region transcription start site region 122907
A530001N23Rik 13 60483504 to 60488808 5304 - lincRNA gene RIKEN cDNA A530001N23 gene
Tssr122908 13 60508785 to 60508820 35 - TSS region transcription start site region 122908
Gm25000 13 60529296 to 60529409 113 - miRNA gene predicted gene, 25000
Gm40974 13 60601110 to 60602485 1375 - lncRNA gene predicted gene, 40974
Cpgi5753 13 60601553 to 60602819 1266 CpG island CpG island 5753
Tssr120113 13 60601695 to 60601704 9 + TSS region transcription start site region 120113
Tssr120114 13 60601743 to 60601754 11 + TSS region transcription start site region 120114
Tssr120115 13 60601774 to 60601788 14 + TSS region transcription start site region 120115
Tssr120116 13 60601921 to 60602039 118 + TSS region transcription start site region 120116
Dapk1 13 60601947 to 60763191 161244 + protein coding gene death associated protein kinase 1
Tssr120117 13 60602182 to 60602231 49 + TSS region transcription start site region 120117
Tssr4096 13 60602555 to 60602576 21 - TSS region transcription start site region 4096
Tssr122909 13 60602584 to 60602596 12 - TSS region transcription start site region 122909
Tssr120118 13 60603589 to 60603600 11 + TSS region transcription start site region 120118
Tssr4097 13 60606963 to 60606968 5 + TSS region transcription start site region 4097
Tssr120119 13 60608464 to 60608467 3 + TSS region transcription start site region 120119
Tssr120120 13 60610555 to 60610559 4 + TSS region transcription start site region 120120
Tssr120121 13 60613809 to 60613815 6 + TSS region transcription start site region 120121
Gm48582 13 60622967 to 60629395 6428 + unclassified gene predicted gene, 48582
Tssr122910 13 60624172 to 60624175 3 - TSS region transcription start site region 122910
Tssr120122 13 60636541 to 60636555 14 + TSS region transcription start site region 120122
Tssr120123 13 60640999 to 60641008 9 + TSS region transcription start site region 120123
Tssr120124 13 60641015 to 60641019 4 + TSS region transcription start site region 120124
Gm48583 13 60641790 to 60642009 219 + pseudogene predicted gene, 48583
Tssr120125 13 60646909 to 60646925 16 + TSS region transcription start site region 120125
Tssr120126 13 60647506 to 60647510 4 + TSS region transcription start site region 120126
Tssr120127 13 60647756 to 60647771 15 + TSS region transcription start site region 120127