Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:59699928-59839996

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spata31d1a 13 59700083 to 59706588 6505 - protein coding gene spermatogenesis associated 31 subfamily D, member 1A
Gm40972 13 59706687 to 59711214 4527 - lncRNA gene predicted gene, 40972
Cpgi5741 13 59710354 to 59710665 311 CpG island CpG island 5741
Tssr4094 13 59712282 to 59712285 3 + TSS region transcription start site region 4094
Spata31d1b 13 59712284 to 59719289 7005 + protein coding gene spermatogenesis associated 31 subfamily D, member 1B
Spata31d1d 13 59725925 to 59731752 5827 - protein coding gene spermatogenesis associated 31 subfamily D, member 1D
Cpgi5742 13 59726317 to 59726761 444 CpG island CpG island 5742
Tssr120102 13 59726698 to 59726729 31 + TSS region transcription start site region 120102
Tssr122879 13 59731734 to 59731758 24 - TSS region transcription start site region 122879
Tssr122880 13 59731768 to 59731773 5 - TSS region transcription start site region 122880
Tssr120103 13 59731885 to 59731911 26 + TSS region transcription start site region 120103
4930528D03Rik 13 59733650 to 59737470 3820 + lincRNA gene RIKEN cDNA 4930528D03 gene
Tssr120104 13 59733657 to 59733666 9 + TSS region transcription start site region 120104
1700014D04Rik 13 59740842 to 59746752 5910 - protein coding gene RIKEN cDNA 1700014D04 gene
Gm46419 13 59742743 to 59751235 8492 + lincRNA gene predicted gene, 46419
Tssr122881 13 59746929 to 59746940 11 - TSS region transcription start site region 122881
Tssr122882 13 59746944 to 59746974 30 - TSS region transcription start site region 122882
Isca1 13 59755415 to 59769789 14374 - protein coding gene iron-sulfur cluster assembly 1
Gm49354 13 59758935 to 59782245 23310 - protein coding gene predicted gene, 49354
Cpgi5743 13 59769069 to 59770568 1499 CpG island CpG island 5743
Tssr122883 13 59769529 to 59769539 10 - TSS region transcription start site region 122883
Tssr122884 13 59769751 to 59769826 75 - TSS region transcription start site region 122884
Tssr120105 13 59769928 to 59769996 68 + TSS region transcription start site region 120105
Etohd2 13 59769966 to 59773680 3714 + antisense lncRNA gene ethanol decreased 2
Tssr122885 13 59770289 to 59770304 15 - TSS region transcription start site region 122885
Tssr4095 13 59770525 to 59770531 6 + TSS region transcription start site region 4095
Tut7 13 59771876 to 59823169 51293 - protein coding gene terminal uridylyl transferase 7
Gm48194 13 59781062 to 59781578 516 - sense intronic lncRNA gene predicted gene, 48194
Tssr122886 13 59796815 to 59796821 6 - TSS region transcription start site region 122886
Cpgi5744 13 59822454 to 59823543 1089 CpG island CpG island 5744
Tssr122887 13 59822569 to 59822580 11 - TSS region transcription start site region 122887
Tssr122888 13 59822604 to 59822642 38 - TSS region transcription start site region 122888
Tssr122889 13 59822649 to 59822678 29 - TSS region transcription start site region 122889
Tssr122890 13 59822812 to 59822833 21 - TSS region transcription start site region 122890
Tssr122891 13 59822958 to 59822970 12 - TSS region transcription start site region 122891
Tssr122892 13 59822993 to 59823005 12 - TSS region transcription start site region 122892
Tssr122893 13 59823048 to 59823057 9 - TSS region transcription start site region 122893
Tssr122894 13 59823072 to 59823143 71 - TSS region transcription start site region 122894
Tssr120106 13 59823286 to 59823328 42 + TSS region transcription start site region 120106
Gm34961 13 59823586 to 59833239 9653 + lincRNA gene predicted gene, 34961
Tssr120107 13 59829287 to 59829294 7 + TSS region transcription start site region 120107
Cpgi5745 13 59839146 to 59839427 281 CpG island CpG island 5745