Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:59108204-59618429

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntrk2 13 58806569 to 59133970 327401 + protein coding gene neurotrophic tyrosine kinase, receptor, type 2
Cpgi5735 13 59133064 to 59133284 220 CpG island CpG island 5735
Tssr120091 13 59133375 to 59133379 4 + TSS region transcription start site region 120091
Gm34307 13 59144257 to 59145828 1571 - lincRNA gene predicted gene, 34307
Tssr122863 13 59145824 to 59145857 33 - TSS region transcription start site region 122863
Gm34354 13 59148845 to 59203801 54956 + lincRNA gene predicted gene, 34354
Gm47359 13 59170633 to 59182816 12183 - lincRNA gene predicted gene, 47359
Tssr122864 13 59182784 to 59182787 3 - TSS region transcription start site region 122864
Gm34558 13 59211622 to 59217172 5550 - lincRNA gene predicted gene, 34558
Tssr122865 13 59229275 to 59229282 7 - TSS region transcription start site region 122865
Gm34672 13 59235750 to 59255411 19661 - lincRNA gene predicted gene, 34672
Tssr122866 13 59242613 to 59242617 4 - TSS region transcription start site region 122866
Gm47360 13 59294819 to 59330243 35424 - lincRNA gene predicted gene, 47360
Cpgi5736 13 59342125 to 59342302 177 CpG island CpG island 5736
Tssr120092 13 59357731 to 59357777 46 + TSS region transcription start site region 120092
Cpgi5737 13 59363204 to 59363429 225 CpG island CpG island 5737
Gm34721 13 59406011 to 59408197 2186 - lincRNA gene predicted gene, 34721
Gm34788 13 59412238 to 59417279 5041 - lincRNA gene predicted gene, 34788
4930455M05Rik 13 59419108 to 59423161 4053 + lincRNA gene RIKEN cDNA 4930455M05 gene
Tssr120093 13 59419361 to 59419397 36 + TSS region transcription start site region 120093
Tssr120094 13 59419584 to 59419590 6 + TSS region transcription start site region 120094
Agtpbp1 13 59449534 to 59557366 107832 - protein coding gene ATP/GTP binding protein 1
Tssr122867 13 59490739 to 59490754 15 - TSS region transcription start site region 122867
Tssr122868 13 59491790 to 59491794 4 - TSS region transcription start site region 122868
Tssr120095 13 59497208 to 59497210 2 + TSS region transcription start site region 120095
Tssr122869 13 59508683 to 59508698 15 - TSS region transcription start site region 122869
Tssr4092 13 59510320 to 59510326 6 + TSS region transcription start site region 4092
Cpgi5738 13 59556533 to 59557888 1355 CpG island CpG island 5738
Tssr122870 13 59556845 to 59556854 9 - TSS region transcription start site region 122870
Tssr122871 13 59557212 to 59557227 15 - TSS region transcription start site region 122871
Tssr122872 13 59557230 to 59557346 116 - TSS region transcription start site region 122872
Tssr122873 13 59557354 to 59557372 18 - TSS region transcription start site region 122873
A930015P04Rik 13 59557566 to 59558337 771 + unclassified gene RIKEN cDNA A930015P04 gene
Tssr120096 13 59579056 to 59579059 3 + TSS region transcription start site region 120096
A230056J06Rik 13 59580176 to 59585223 5047 - lncRNA gene RIKEN cDNA A230056J06 gene
Cpgi5739 13 59585037 to 59586039 1002 CpG island CpG island 5739
Tssr120097 13 59585301 to 59585325 24 + TSS region transcription start site region 120097
Naa35 13 59585323 to 59634798 49475 + protein coding gene N(alpha)-acetyltransferase 35, NatC auxiliary subunit
Tssr120098 13 59585348 to 59585441 93 + TSS region transcription start site region 120098
Gm47246 13 59603309 to 59605662 2353 + unclassified gene predicted gene, 47246