Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:58721569-59218970

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr4090 13 58730748 to 58730752 4 + TSS region transcription start site region 4090
4930455J16Rik 13 58741074 to 58762311 21237 - lincRNA gene RIKEN cDNA 4930455J16 gene
Tssr4091 13 58744003 to 58744010 7 + TSS region transcription start site region 4091
Tssr120081 13 58756512 to 58756523 11 + TSS region transcription start site region 120081
Rpl13-ps2 13 58756551 to 58757164 613 + pseudogene ribosomal protein L13, pseudogene 2
Tssr122858 13 58762274 to 58762292 18 - TSS region transcription start site region 122858
Tssr122859 13 58762300 to 58762318 18 - TSS region transcription start site region 122859
Gm47947 13 58762385 to 58776543 14158 + lincRNA gene predicted gene, 47947
D13Mit167 13 58772682 to 58772826 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 167
Gm40968 13 58779111 to 58797450 18339 - lincRNA gene predicted gene, 40968
Cpgi5731 13 58806300 to 58808957 2657 CpG island CpG island 5731
Tssr120082 13 58806564 to 58806622 58 + TSS region transcription start site region 120082
clf2 13 58806569 to 72634198 13827629 heritable phenotypic marker cleft lip 2
Ntrk2 13 58806569 to 59133970 327401 + protein coding gene neurotrophic tyrosine kinase, receptor, type 2
Tssr120083 13 58806634 to 58806655 21 + TSS region transcription start site region 120083
Tssr120084 13 58807693 to 58807700 7 + TSS region transcription start site region 120084
Tssr120085 13 58807819 to 58807838 19 + TSS region transcription start site region 120085
Tssr120086 13 58807861 to 58807883 22 + TSS region transcription start site region 120086
Tssr120087 13 58807884 to 58807902 18 + TSS region transcription start site region 120087
Tssr120088 13 58808263 to 58808286 23 + TSS region transcription start site region 120088
Tssr120089 13 58808683 to 58808752 69 + TSS region transcription start site region 120089
C630044B11Rik 13 58812153 to 58814363 2210 + unclassified gene RIKEN cDNA C630044B11 gene
Gm47423 13 58824218 to 58826994 2776 - antisense lncRNA gene predicted gene, 47423
Tssr122860 13 58827011 to 58827014 3 - TSS region transcription start site region 122860
Tssr120090 13 58906318 to 58906319 1 + TSS region transcription start site region 120090
Tssr122861 13 58912007 to 58912016 9 - TSS region transcription start site region 122861
Cpgi5732 13 59011371 to 59011619 248 CpG island CpG island 5732
4930415C11Rik 13 59054896 to 59084093 29197 - antisense lncRNA gene RIKEN cDNA 4930415C11 gene
Cpgi5733 13 59060143 to 59060399 256 CpG island CpG island 5733
Cpgi5734 13 59073913 to 59074278 365 CpG island CpG island 5734
Gm34245 13 59075440 to 59078296 2856 - lncRNA gene predicted gene, 34245
Tssr122862 13 59084230 to 59084244 14 - TSS region transcription start site region 122862
Cpgi5735 13 59133064 to 59133284 220 CpG island CpG island 5735
Tssr120091 13 59133375 to 59133379 4 + TSS region transcription start site region 120091
Gm34307 13 59144257 to 59145828 1571 - lincRNA gene predicted gene, 34307
Tssr122863 13 59145824 to 59145857 33 - TSS region transcription start site region 122863
Gm34354 13 59148845 to 59203801 54956 + lincRNA gene predicted gene, 34354
Gm47359 13 59170633 to 59182816 12183 - lincRNA gene predicted gene, 47359
Tssr122864 13 59182784 to 59182787 3 - TSS region transcription start site region 122864
Gm34558 13 59211622 to 59217172 5550 - lincRNA gene predicted gene, 34558