Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:58407208-60587210

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sysbp2 13 20293442 to 59673791 39380349 QTL systolic blood pressure 2
Rmi1 13 58402248 to 58411148 8900 + protein coding gene RecQ mediated genome instability 1
Gm47918 13 58443021 to 58444580 1559 + lincRNA gene predicted gene, 47918
Gm33875 13 58443406 to 58451773 8367 - lncRNA gene predicted gene, 33875
Cpgi5728 13 58453017 to 58453430 413 CpG island CpG island 5728
Gm40966 13 58470620 to 58477449 6829 - lncRNA gene predicted gene, 40966
Gm38494 13 58542808 to 58546790 3982 - lncRNA gene predicted gene, 38494
Gm3131 13 58546189 to 58546380 191 + pseudogene predicted gene 3131
Slc28a3 13 58553307 to 58610877 57570 - protein coding gene solute carrier family 28 (sodium-coupled nucleoside transporter), member 3
Tssr122854 13 58555071 to 58555091 20 - TSS region transcription start site region 122854
Tssr122855 13 58610879 to 58610905 26 - TSS region transcription start site region 122855
Cpgi5729 13 58614898 to 58615112 214 CpG island CpG island 5729
Gm47942 13 58668624 to 58668839 215 - pseudogene predicted gene, 47942
Tssr122856 13 58668686 to 58668707 21 - TSS region transcription start site region 122856
Cpgi5730 13 58668741 to 58668933 192 CpG island CpG island 5730
Tssr122857 13 58668743 to 58668779 36 - TSS region transcription start site region 122857
Gm34058 13 58683672 to 58688405 4733 - lncRNA gene predicted gene, 34058
D13Mit223 13 58690365 to 58690508 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 223
Tssr4090 13 58730748 to 58730752 4 + TSS region transcription start site region 4090
4930455J16Rik 13 58741074 to 58762311 21237 - lincRNA gene RIKEN cDNA 4930455J16 gene
Tssr4091 13 58744003 to 58744010 7 + TSS region transcription start site region 4091
Tssr120081 13 58756512 to 58756523 11 + TSS region transcription start site region 120081
Rpl13-ps2 13 58756551 to 58757164 613 + pseudogene ribosomal protein L13, pseudogene 2
Tssr122858 13 58762274 to 58762292 18 - TSS region transcription start site region 122858
Tssr122859 13 58762300 to 58762318 18 - TSS region transcription start site region 122859
Gm47947 13 58762385 to 58776543 14158 + lincRNA gene predicted gene, 47947
D13Mit167 13 58772682 to 58772826 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 167
Gm40968 13 58779111 to 58797450 18339 - lincRNA gene predicted gene, 40968
Cpgi5731 13 58806300 to 58808957 2657 CpG island CpG island 5731
Tssr120082 13 58806564 to 58806622 58 + TSS region transcription start site region 120082
clf2 13 58806569 to 72634198 13827629 heritable phenotypic marker cleft lip 2
Ntrk2 13 58806569 to 59133970 327401 + protein coding gene neurotrophic tyrosine kinase, receptor, type 2
Tssr120083 13 58806634 to 58806655 21 + TSS region transcription start site region 120083
Tssr120084 13 58807693 to 58807700 7 + TSS region transcription start site region 120084
Tssr120085 13 58807819 to 58807838 19 + TSS region transcription start site region 120085
Tssr120086 13 58807861 to 58807883 22 + TSS region transcription start site region 120086
Tssr120087 13 58807884 to 58807902 18 + TSS region transcription start site region 120087
Tssr120088 13 58808263 to 58808286 23 + TSS region transcription start site region 120088
Tssr120089 13 58808683 to 58808752 69 + TSS region transcription start site region 120089
C630044B11Rik 13 58812153 to 58814363 2210 + unclassified gene RIKEN cDNA C630044B11 gene
Gm47423 13 58824218 to 58826994 2776 - antisense lncRNA gene predicted gene, 47423
Tssr122860 13 58827011 to 58827014 3 - TSS region transcription start site region 122860
Tssr120090 13 58906318 to 58906319 1 + TSS region transcription start site region 120090
Tssr122861 13 58912007 to 58912016 9 - TSS region transcription start site region 122861
Cpgi5732 13 59011371 to 59011619 248 CpG island CpG island 5732
4930415C11Rik 13 59054896 to 59084093 29197 - antisense lncRNA gene RIKEN cDNA 4930415C11 gene
Cpgi5733 13 59060143 to 59060399 256 CpG island CpG island 5733
Cpgi5734 13 59073913 to 59074278 365 CpG island CpG island 5734
Gm34245 13 59075440 to 59078296 2856 - lncRNA gene predicted gene, 34245
Tssr122862 13 59084230 to 59084244 14 - TSS region transcription start site region 122862
Cpgi5735 13 59133064 to 59133284 220 CpG island CpG island 5735
Tssr120091 13 59133375 to 59133379 4 + TSS region transcription start site region 120091
Gm34307 13 59144257 to 59145828 1571 - lincRNA gene predicted gene, 34307
Tssr122863 13 59145824 to 59145857 33 - TSS region transcription start site region 122863
Gm34354 13 59148845 to 59203801 54956 + lincRNA gene predicted gene, 34354
Gm47359 13 59170633 to 59182816 12183 - lincRNA gene predicted gene, 47359
Tssr122864 13 59182784 to 59182787 3 - TSS region transcription start site region 122864
Gm34558 13 59211622 to 59217172 5550 - lincRNA gene predicted gene, 34558
Tssr122865 13 59229275 to 59229282 7 - TSS region transcription start site region 122865
Gm34672 13 59235750 to 59255411 19661 - lincRNA gene predicted gene, 34672
Tssr122866 13 59242613 to 59242617 4 - TSS region transcription start site region 122866
Gm47360 13 59294819 to 59330243 35424 - lincRNA gene predicted gene, 47360
Cpgi5736 13 59342125 to 59342302 177 CpG island CpG island 5736
Tssr120092 13 59357731 to 59357777 46 + TSS region transcription start site region 120092
Cpgi5737 13 59363204 to 59363429 225 CpG island CpG island 5737
Gm34721 13 59406011 to 59408197 2186 - lincRNA gene predicted gene, 34721
Gm34788 13 59412238 to 59417279 5041 - lincRNA gene predicted gene, 34788
4930455M05Rik 13 59419108 to 59423161 4053 + lincRNA gene RIKEN cDNA 4930455M05 gene
Tssr120093 13 59419361 to 59419397 36 + TSS region transcription start site region 120093
Tssr120094 13 59419584 to 59419590 6 + TSS region transcription start site region 120094
Agtpbp1 13 59449534 to 59557366 107832 - protein coding gene ATP/GTP binding protein 1
Tssr122867 13 59490739 to 59490754 15 - TSS region transcription start site region 122867
Tssr122868 13 59491790 to 59491794 4 - TSS region transcription start site region 122868
Tssr120095 13 59497208 to 59497210 2 + TSS region transcription start site region 120095
Tssr122869 13 59508683 to 59508698 15 - TSS region transcription start site region 122869
Tssr4092 13 59510320 to 59510326 6 + TSS region transcription start site region 4092
Cpgi5738 13 59556533 to 59557888 1355 CpG island CpG island 5738
Tssr122870 13 59556845 to 59556854 9 - TSS region transcription start site region 122870
Tssr122871 13 59557212 to 59557227 15 - TSS region transcription start site region 122871
Tssr122872 13 59557230 to 59557346 116 - TSS region transcription start site region 122872
Tssr122873 13 59557354 to 59557372 18 - TSS region transcription start site region 122873
A930015P04Rik 13 59557566 to 59558337 771 + unclassified gene RIKEN cDNA A930015P04 gene
Tssr120096 13 59579056 to 59579059 3 + TSS region transcription start site region 120096
A230056J06Rik 13 59580176 to 59585223 5047 - lncRNA gene RIKEN cDNA A230056J06 gene
Cpgi5739 13 59585037 to 59586039 1002 CpG island CpG island 5739
Tssr120097 13 59585301 to 59585325 24 + TSS region transcription start site region 120097
Naa35 13 59585323 to 59634798 49475 + protein coding gene N(alpha)-acetyltransferase 35, NatC auxiliary subunit
Tssr120098 13 59585348 to 59585441 93 + TSS region transcription start site region 120098
Gm47246 13 59603309 to 59605662 2353 + unclassified gene predicted gene, 47246
Tssr120099 13 59625139 to 59625165 26 + TSS region transcription start site region 120099
Golm1 13 59634996 to 59675784 40788 - protein coding gene golgi membrane protein 1
Tssr122874 13 59640153 to 59640172 19 - TSS region transcription start site region 122874
Tssr122875 13 59640179 to 59640189 10 - TSS region transcription start site region 122875
Tssr4093 13 59640215 to 59640237 22 - TSS region transcription start site region 4093
Tssr120100 13 59656567 to 59656582 15 + TSS region transcription start site region 120100
Tssr120101 13 59657242 to 59657260 18 + TSS region transcription start site region 120101
Tssr122876 13 59672009 to 59672013 4 - TSS region transcription start site region 122876
D13Mit186 13 59673645 to 59673791 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 186
Cpgi5740 13 59674898 to 59676048 1150 CpG island CpG island 5740
Tssr122877 13 59675754 to 59675814 60 - TSS region transcription start site region 122877
4921517D22Rik 13 59687402 to 59694103 6701 - protein coding gene RIKEN cDNA 4921517D22 gene
Gm47269 13 59688371 to 59688791 420 + pseudogene predicted gene, 47269
D13Mit252 13 59691359 to 59691443 84 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 252
Tssr122878 13 59694100 to 59694108 8 - TSS region transcription start site region 122878
Spata31d1a 13 59700083 to 59706588 6505 - protein coding gene spermatogenesis associated 31 subfamily D, member 1A
Gm40972 13 59706687 to 59711214 4527 - lncRNA gene predicted gene, 40972
Cpgi5741 13 59710354 to 59710665 311 CpG island CpG island 5741
Tssr4094 13 59712282 to 59712285 3 + TSS region transcription start site region 4094
Spata31d1b 13 59712284 to 59719289 7005 + protein coding gene spermatogenesis associated 31 subfamily D, member 1B
Spata31d1d 13 59725925 to 59731752 5827 - protein coding gene spermatogenesis associated 31 subfamily D, member 1D
Cpgi5742 13 59726317 to 59726761 444 CpG island CpG island 5742
Tssr120102 13 59726698 to 59726729 31 + TSS region transcription start site region 120102
Tssr122879 13 59731734 to 59731758 24 - TSS region transcription start site region 122879
Tssr122880 13 59731768 to 59731773 5 - TSS region transcription start site region 122880
Tssr120103 13 59731885 to 59731911 26 + TSS region transcription start site region 120103
4930528D03Rik 13 59733650 to 59737470 3820 + lincRNA gene RIKEN cDNA 4930528D03 gene
Tssr120104 13 59733657 to 59733666 9 + TSS region transcription start site region 120104
1700014D04Rik 13 59740842 to 59746752 5910 - protein coding gene RIKEN cDNA 1700014D04 gene
Gm46419 13 59742743 to 59751235 8492 + lincRNA gene predicted gene, 46419
Tssr122881 13 59746929 to 59746940 11 - TSS region transcription start site region 122881
Tssr122882 13 59746944 to 59746974 30 - TSS region transcription start site region 122882
Isca1 13 59755415 to 59769789 14374 - protein coding gene iron-sulfur cluster assembly 1
Gm49354 13 59758935 to 59782245 23310 - protein coding gene predicted gene, 49354
Cpgi5743 13 59769069 to 59770568 1499 CpG island CpG island 5743
Tssr122883 13 59769529 to 59769539 10 - TSS region transcription start site region 122883
Tssr122884 13 59769751 to 59769826 75 - TSS region transcription start site region 122884
Tssr120105 13 59769928 to 59769996 68 + TSS region transcription start site region 120105
Etohd2 13 59769966 to 59773680 3714 + antisense lncRNA gene ethanol decreased 2
Tssr122885 13 59770289 to 59770304 15 - TSS region transcription start site region 122885
Tssr4095 13 59770525 to 59770531 6 + TSS region transcription start site region 4095
Tut7 13 59771876 to 59823169 51293 - protein coding gene terminal uridylyl transferase 7
Gm48194 13 59781062 to 59781578 516 - sense intronic lncRNA gene predicted gene, 48194
Tssr122886 13 59796815 to 59796821 6 - TSS region transcription start site region 122886
Cpgi5744 13 59822454 to 59823543 1089 CpG island CpG island 5744
Tssr122887 13 59822569 to 59822580 11 - TSS region transcription start site region 122887
Tssr122888 13 59822604 to 59822642 38 - TSS region transcription start site region 122888
Tssr122889 13 59822649 to 59822678 29 - TSS region transcription start site region 122889
Tssr122890 13 59822812 to 59822833 21 - TSS region transcription start site region 122890
Tssr122891 13 59822958 to 59822970 12 - TSS region transcription start site region 122891
Tssr122892 13 59822993 to 59823005 12 - TSS region transcription start site region 122892
Tssr122893 13 59823048 to 59823057 9 - TSS region transcription start site region 122893
Tssr122894 13 59823072 to 59823143 71 - TSS region transcription start site region 122894
Tssr120106 13 59823286 to 59823328 42 + TSS region transcription start site region 120106
Gm34961 13 59823586 to 59833239 9653 + lincRNA gene predicted gene, 34961
Tssr120107 13 59829287 to 59829294 7 + TSS region transcription start site region 120107
Cpgi5745 13 59839146 to 59839427 281 CpG island CpG island 5745
D13Mit122 13 59850190 to 59850337 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 122
Gm48384 13 59873642 to 59874964 1322 + lincRNA gene predicted gene, 48384
Tssr120108 13 59876045 to 59876056 11 + TSS region transcription start site region 120108
Gm19866 13 59901233 to 59915822 14589 - lincRNA gene predicted gene, 19866
Gm48390 13 59919438 to 59920340 902 + pseudogene predicted gene, 48390
D13Mit141 13 59977031 to 59977133 102 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 141
Gm35143 13 59990668 to 59998541 7873 + lncRNA gene predicted gene, 35143
D13Mit157 13 60001369 to 60001510 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 157
C77681 13 60015566 to 60016152 586 unclassified gene expressed sequence C77681
Tssr120109 13 60029622 to 60029629 7 + TSS region transcription start site region 120109
Tssr120110 13 60029673 to 60029693 20 + TSS region transcription start site region 120110
Tssr120111 13 60029704 to 60029709 5 + TSS region transcription start site region 120111
A530065N20Rik 13 60029711 to 60116669 86958 + lincRNA gene RIKEN cDNA A530046M15 gene
Gm35193 13 60041125 to 60044998 3873 - lncRNA gene predicted gene, 35193
Gm48396 13 60053684 to 60057625 3941 - lincRNA gene predicted gene, 48396
Gm48397 13 60068641 to 60074017 5376 + lincRNA gene predicted gene, 48397
Gm46420 13 60114526 to 60126416 11890 - lncRNA gene predicted gene, 46420
Cpgi5746 13 60126269 to 60126662 393 CpG island CpG island 5746
Cpgi5747 13 60131873 to 60132032 159 CpG island CpG island 5747
Cpgi5748 13 60147388 to 60147574 186 CpG island CpG island 5748
Gas1 13 60174405 to 60177365 2960 - protein coding gene growth arrest specific 1
Tssr122895 13 60174869 to 60174888 19 - TSS region transcription start site region 122895
Tssr122896 13 60174987 to 60174997 10 - TSS region transcription start site region 122896
Tssr122897 13 60175024 to 60175038 14 - TSS region transcription start site region 122897
Tssr122898 13 60175206 to 60175224 18 - TSS region transcription start site region 122898
Cpgi5749 13 60175519 to 60177839 2320 CpG island CpG island 5749
Tssr122899 13 60176049 to 60176053 4 - TSS region transcription start site region 122899
Tssr122900 13 60176547 to 60176564 17 - TSS region transcription start site region 122900
Gm48488 13 60176682 to 60182862 6180 + lincRNA gene predicted gene, 48488
Tssr122901 13 60177064 to 60177083 19 - TSS region transcription start site region 122901
Tssr122902 13 60177118 to 60177148 30 - TSS region transcription start site region 122902
Tssr122903 13 60177166 to 60177202 36 - TSS region transcription start site region 122903
Tssr122904 13 60177357 to 60177373 16 - TSS region transcription start site region 122904
Tssr122905 13 60177392 to 60177399 7 - TSS region transcription start site region 122905
Tssr122906 13 60177498 to 60177574 76 - TSS region transcription start site region 122906
Cpgi5750 13 60179333 to 60179828 495 CpG island CpG island 5750
Gm5084 13 60205471 to 60216018 10547 + lincRNA gene predicted gene 5084
Cpgi5751 13 60205925 to 60206142 217 CpG island CpG island 5751
Cpgi5752 13 60248535 to 60248708 173 CpG island CpG island 5752
Tssr120112 13 60248564 to 60248567 3 + TSS region transcription start site region 120112
Gm19249 13 60248566 to 60249006 440 + pseudogene predicted gene, 19249
Gm24999 13 60293672 to 60293772 100 + miRNA gene predicted gene, 24999
Gm10779 13 60331449 to 60333751 2302 + protein coding gene predicted gene 10779
D13Jpk1 13 60362758 to 60362872 114 DNA segment DNA segment, Chr 13, Japan, Kominami 1
Gm35333 13 60422756 to 60434731 11975 - lincRNA gene predicted gene, 35333
Gm48500 13 60463586 to 60481298 17712 - lincRNA gene predicted gene, 48500
D13Mit43 13 60466446 to 60466577 131 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 43
Tssr122907 13 60480362 to 60480371 9 - TSS region transcription start site region 122907
A530001N23Rik 13 60483504 to 60488808 5304 - lincRNA gene RIKEN cDNA A530001N23 gene
Tssr122908 13 60508785 to 60508820 35 - TSS region transcription start site region 122908
Gm25000 13 60529296 to 60529409 113 - miRNA gene predicted gene, 25000