Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:58400440-59753296

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sysbp2 13 20293442 to 59673791 39380349 QTL systolic blood pressure 2
Hnrnpk 13 58391142 to 58403343 12201 - protein coding gene heterogeneous nuclear ribonucleoprotein K
Tssr122848 13 58400488 to 58400492 4 - TSS region transcription start site region 122848
Cpgi5727 13 58400995 to 58403480 2485 CpG island CpG island 5727
Tssr122849 13 58401520 to 58401590 70 - TSS region transcription start site region 122849
Tssr4089 13 58402030 to 58402059 29 - TSS region transcription start site region 4089
Tssr122850 13 58402119 to 58402149 30 - TSS region transcription start site region 122850
Tssr120077 13 58402233 to 58402261 28 + TSS region transcription start site region 120077
Rmi1 13 58402248 to 58411148 8900 + protein coding gene RecQ mediated genome instability 1
Tssr122851 13 58402449 to 58402472 23 - TSS region transcription start site region 122851
Tssr122852 13 58402476 to 58402524 48 - TSS region transcription start site region 122852
Tssr122853 13 58402533 to 58402534 1 - TSS region transcription start site region 122853
Tssr120078 13 58402546 to 58402578 32 + TSS region transcription start site region 120078
Tssr120079 13 58402685 to 58402705 20 + TSS region transcription start site region 120079
Tssr120080 13 58402708 to 58402727 19 + TSS region transcription start site region 120080
Gm47918 13 58443021 to 58444580 1559 + lincRNA gene predicted gene, 47918
Gm33875 13 58443406 to 58451773 8367 - lncRNA gene predicted gene, 33875
Cpgi5728 13 58453017 to 58453430 413 CpG island CpG island 5728
Gm40966 13 58470620 to 58477449 6829 - lncRNA gene predicted gene, 40966
Gm38494 13 58542808 to 58546790 3982 - lncRNA gene predicted gene, 38494
Gm3131 13 58546189 to 58546380 191 + pseudogene predicted gene 3131
Slc28a3 13 58553307 to 58610877 57570 - protein coding gene solute carrier family 28 (sodium-coupled nucleoside transporter), member 3
Tssr122854 13 58555071 to 58555091 20 - TSS region transcription start site region 122854
Tssr122855 13 58610879 to 58610905 26 - TSS region transcription start site region 122855
Cpgi5729 13 58614898 to 58615112 214 CpG island CpG island 5729
Gm47942 13 58668624 to 58668839 215 - pseudogene predicted gene, 47942
Tssr122856 13 58668686 to 58668707 21 - TSS region transcription start site region 122856
Cpgi5730 13 58668741 to 58668933 192 CpG island CpG island 5730
Tssr122857 13 58668743 to 58668779 36 - TSS region transcription start site region 122857
Gm34058 13 58683672 to 58688405 4733 - lncRNA gene predicted gene, 34058
D13Mit223 13 58690365 to 58690508 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 223
Tssr4090 13 58730748 to 58730752 4 + TSS region transcription start site region 4090
4930455J16Rik 13 58741074 to 58762311 21237 - lincRNA gene RIKEN cDNA 4930455J16 gene
Tssr4091 13 58744003 to 58744010 7 + TSS region transcription start site region 4091
Tssr120081 13 58756512 to 58756523 11 + TSS region transcription start site region 120081
Rpl13-ps2 13 58756551 to 58757164 613 + pseudogene ribosomal protein L13, pseudogene 2
Tssr122858 13 58762274 to 58762292 18 - TSS region transcription start site region 122858
Tssr122859 13 58762300 to 58762318 18 - TSS region transcription start site region 122859
Gm47947 13 58762385 to 58776543 14158 + lincRNA gene predicted gene, 47947
D13Mit167 13 58772682 to 58772826 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 167
Gm40968 13 58779111 to 58797450 18339 - lincRNA gene predicted gene, 40968
Cpgi5731 13 58806300 to 58808957 2657 CpG island CpG island 5731
Tssr120082 13 58806564 to 58806622 58 + TSS region transcription start site region 120082
clf2 13 58806569 to 72634198 13827629 heritable phenotypic marker cleft lip 2
Ntrk2 13 58806569 to 59133970 327401 + protein coding gene neurotrophic tyrosine kinase, receptor, type 2
Tssr120083 13 58806634 to 58806655 21 + TSS region transcription start site region 120083
Tssr120084 13 58807693 to 58807700 7 + TSS region transcription start site region 120084
Tssr120085 13 58807819 to 58807838 19 + TSS region transcription start site region 120085
Tssr120086 13 58807861 to 58807883 22 + TSS region transcription start site region 120086
Tssr120087 13 58807884 to 58807902 18 + TSS region transcription start site region 120087
Tssr120088 13 58808263 to 58808286 23 + TSS region transcription start site region 120088
Tssr120089 13 58808683 to 58808752 69 + TSS region transcription start site region 120089
C630044B11Rik 13 58812153 to 58814363 2210 + unclassified gene RIKEN cDNA C630044B11 gene
Gm47423 13 58824218 to 58826994 2776 - antisense lncRNA gene predicted gene, 47423
Tssr122860 13 58827011 to 58827014 3 - TSS region transcription start site region 122860
Tssr120090 13 58906318 to 58906319 1 + TSS region transcription start site region 120090
Tssr122861 13 58912007 to 58912016 9 - TSS region transcription start site region 122861
Cpgi5732 13 59011371 to 59011619 248 CpG island CpG island 5732
4930415C11Rik 13 59054896 to 59084093 29197 - antisense lncRNA gene RIKEN cDNA 4930415C11 gene
Cpgi5733 13 59060143 to 59060399 256 CpG island CpG island 5733
Cpgi5734 13 59073913 to 59074278 365 CpG island CpG island 5734
Gm34245 13 59075440 to 59078296 2856 - lncRNA gene predicted gene, 34245
Tssr122862 13 59084230 to 59084244 14 - TSS region transcription start site region 122862
Cpgi5735 13 59133064 to 59133284 220 CpG island CpG island 5735
Tssr120091 13 59133375 to 59133379 4 + TSS region transcription start site region 120091
Gm34307 13 59144257 to 59145828 1571 - lincRNA gene predicted gene, 34307
Tssr122863 13 59145824 to 59145857 33 - TSS region transcription start site region 122863
Gm34354 13 59148845 to 59203801 54956 + lincRNA gene predicted gene, 34354
Gm47359 13 59170633 to 59182816 12183 - lincRNA gene predicted gene, 47359
Tssr122864 13 59182784 to 59182787 3 - TSS region transcription start site region 122864
Gm34558 13 59211622 to 59217172 5550 - lincRNA gene predicted gene, 34558
Tssr122865 13 59229275 to 59229282 7 - TSS region transcription start site region 122865
Gm34672 13 59235750 to 59255411 19661 - lincRNA gene predicted gene, 34672
Tssr122866 13 59242613 to 59242617 4 - TSS region transcription start site region 122866
Gm47360 13 59294819 to 59330243 35424 - lincRNA gene predicted gene, 47360
Cpgi5736 13 59342125 to 59342302 177 CpG island CpG island 5736
Tssr120092 13 59357731 to 59357777 46 + TSS region transcription start site region 120092
Cpgi5737 13 59363204 to 59363429 225 CpG island CpG island 5737
Gm34721 13 59406011 to 59408197 2186 - lincRNA gene predicted gene, 34721
Gm34788 13 59412238 to 59417279 5041 - lincRNA gene predicted gene, 34788
4930455M05Rik 13 59419108 to 59423161 4053 + lincRNA gene RIKEN cDNA 4930455M05 gene
Tssr120093 13 59419361 to 59419397 36 + TSS region transcription start site region 120093
Tssr120094 13 59419584 to 59419590 6 + TSS region transcription start site region 120094
Agtpbp1 13 59449534 to 59557366 107832 - protein coding gene ATP/GTP binding protein 1
Tssr122867 13 59490739 to 59490754 15 - TSS region transcription start site region 122867
Tssr122868 13 59491790 to 59491794 4 - TSS region transcription start site region 122868
Tssr120095 13 59497208 to 59497210 2 + TSS region transcription start site region 120095
Tssr122869 13 59508683 to 59508698 15 - TSS region transcription start site region 122869
Tssr4092 13 59510320 to 59510326 6 + TSS region transcription start site region 4092
Cpgi5738 13 59556533 to 59557888 1355 CpG island CpG island 5738
Tssr122870 13 59556845 to 59556854 9 - TSS region transcription start site region 122870
Tssr122871 13 59557212 to 59557227 15 - TSS region transcription start site region 122871
Tssr122872 13 59557230 to 59557346 116 - TSS region transcription start site region 122872
Tssr122873 13 59557354 to 59557372 18 - TSS region transcription start site region 122873
A930015P04Rik 13 59557566 to 59558337 771 + unclassified gene RIKEN cDNA A930015P04 gene
Tssr120096 13 59579056 to 59579059 3 + TSS region transcription start site region 120096
A230056J06Rik 13 59580176 to 59585223 5047 - lncRNA gene RIKEN cDNA A230056J06 gene
Cpgi5739 13 59585037 to 59586039 1002 CpG island CpG island 5739
Tssr120097 13 59585301 to 59585325 24 + TSS region transcription start site region 120097
Naa35 13 59585323 to 59634798 49475 + protein coding gene N(alpha)-acetyltransferase 35, NatC auxiliary subunit
Tssr120098 13 59585348 to 59585441 93 + TSS region transcription start site region 120098
Gm47246 13 59603309 to 59605662 2353 + unclassified gene predicted gene, 47246
Tssr120099 13 59625139 to 59625165 26 + TSS region transcription start site region 120099
Golm1 13 59634996 to 59675784 40788 - protein coding gene golgi membrane protein 1
Tssr122874 13 59640153 to 59640172 19 - TSS region transcription start site region 122874
Tssr122875 13 59640179 to 59640189 10 - TSS region transcription start site region 122875
Tssr4093 13 59640215 to 59640237 22 - TSS region transcription start site region 4093
Tssr120100 13 59656567 to 59656582 15 + TSS region transcription start site region 120100
Tssr120101 13 59657242 to 59657260 18 + TSS region transcription start site region 120101
Tssr122876 13 59672009 to 59672013 4 - TSS region transcription start site region 122876
D13Mit186 13 59673645 to 59673791 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 186
Cpgi5740 13 59674898 to 59676048 1150 CpG island CpG island 5740
Tssr122877 13 59675754 to 59675814 60 - TSS region transcription start site region 122877
4921517D22Rik 13 59687402 to 59694103 6701 - protein coding gene RIKEN cDNA 4921517D22 gene
Gm47269 13 59688371 to 59688791 420 + pseudogene predicted gene, 47269
D13Mit252 13 59691359 to 59691443 84 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 252
Tssr122878 13 59694100 to 59694108 8 - TSS region transcription start site region 122878
Spata31d1a 13 59700083 to 59706588 6505 - protein coding gene spermatogenesis associated 31 subfamily D, member 1A
Gm40972 13 59706687 to 59711214 4527 - lncRNA gene predicted gene, 40972
Cpgi5741 13 59710354 to 59710665 311 CpG island CpG island 5741
Tssr4094 13 59712282 to 59712285 3 + TSS region transcription start site region 4094
Spata31d1b 13 59712284 to 59719289 7005 + protein coding gene spermatogenesis associated 31 subfamily D, member 1B
Spata31d1d 13 59725925 to 59731752 5827 - protein coding gene spermatogenesis associated 31 subfamily D, member 1D
Cpgi5742 13 59726317 to 59726761 444 CpG island CpG island 5742
Tssr120102 13 59726698 to 59726729 31 + TSS region transcription start site region 120102
Tssr122879 13 59731734 to 59731758 24 - TSS region transcription start site region 122879
Tssr122880 13 59731768 to 59731773 5 - TSS region transcription start site region 122880
Tssr120103 13 59731885 to 59731911 26 + TSS region transcription start site region 120103
4930528D03Rik 13 59733650 to 59737470 3820 + lincRNA gene RIKEN cDNA 4930528D03 gene
Tssr120104 13 59733657 to 59733666 9 + TSS region transcription start site region 120104
1700014D04Rik 13 59740842 to 59746752 5910 - protein coding gene RIKEN cDNA 1700014D04 gene
Gm46419 13 59742743 to 59751235 8492 + lincRNA gene predicted gene, 46419
Tssr122881 13 59746929 to 59746940 11 - TSS region transcription start site region 122881
Tssr122882 13 59746944 to 59746974 30 - TSS region transcription start site region 122882