Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:58390879-58830905

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hnrnpk 13 58391142 to 58403343 12201 - protein coding gene heterogeneous nuclear ribonucleoprotein K
Tssr122845 13 58391922 to 58391926 4 - TSS region transcription start site region 122845
Mir7-1 13 58392779 to 58392886 107 - miRNA gene microRNA 7-1
Tssr122846 13 58392795 to 58392799 4 - TSS region transcription start site region 122846
Tssr122847 13 58399145 to 58399186 41 - TSS region transcription start site region 122847
Tssr122848 13 58400488 to 58400492 4 - TSS region transcription start site region 122848
Cpgi5727 13 58400995 to 58403480 2485 CpG island CpG island 5727
Tssr122849 13 58401520 to 58401590 70 - TSS region transcription start site region 122849
Tssr4089 13 58402030 to 58402059 29 - TSS region transcription start site region 4089
Tssr122850 13 58402119 to 58402149 30 - TSS region transcription start site region 122850
Tssr120077 13 58402233 to 58402261 28 + TSS region transcription start site region 120077
Rmi1 13 58402248 to 58411148 8900 + protein coding gene RecQ mediated genome instability 1
Tssr122851 13 58402449 to 58402472 23 - TSS region transcription start site region 122851
Tssr122852 13 58402476 to 58402524 48 - TSS region transcription start site region 122852
Tssr122853 13 58402533 to 58402534 1 - TSS region transcription start site region 122853
Tssr120078 13 58402546 to 58402578 32 + TSS region transcription start site region 120078
Tssr120079 13 58402685 to 58402705 20 + TSS region transcription start site region 120079
Tssr120080 13 58402708 to 58402727 19 + TSS region transcription start site region 120080
Gm47918 13 58443021 to 58444580 1559 + lincRNA gene predicted gene, 47918
Gm33875 13 58443406 to 58451773 8367 - lncRNA gene predicted gene, 33875
Cpgi5728 13 58453017 to 58453430 413 CpG island CpG island 5728
Gm40966 13 58470620 to 58477449 6829 - lncRNA gene predicted gene, 40966
Gm38494 13 58542808 to 58546790 3982 - lncRNA gene predicted gene, 38494
Gm3131 13 58546189 to 58546380 191 + pseudogene predicted gene 3131
Slc28a3 13 58553307 to 58610877 57570 - protein coding gene solute carrier family 28 (sodium-coupled nucleoside transporter), member 3
Tssr122854 13 58555071 to 58555091 20 - TSS region transcription start site region 122854
Tssr122855 13 58610879 to 58610905 26 - TSS region transcription start site region 122855
Cpgi5729 13 58614898 to 58615112 214 CpG island CpG island 5729
Gm47942 13 58668624 to 58668839 215 - pseudogene predicted gene, 47942
Tssr122856 13 58668686 to 58668707 21 - TSS region transcription start site region 122856
Cpgi5730 13 58668741 to 58668933 192 CpG island CpG island 5730
Tssr122857 13 58668743 to 58668779 36 - TSS region transcription start site region 122857
Gm34058 13 58683672 to 58688405 4733 - lncRNA gene predicted gene, 34058
D13Mit223 13 58690365 to 58690508 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 223
Tssr4090 13 58730748 to 58730752 4 + TSS region transcription start site region 4090
4930455J16Rik 13 58741074 to 58762311 21237 - lincRNA gene RIKEN cDNA 4930455J16 gene
Tssr4091 13 58744003 to 58744010 7 + TSS region transcription start site region 4091
Tssr120081 13 58756512 to 58756523 11 + TSS region transcription start site region 120081
Rpl13-ps2 13 58756551 to 58757164 613 + pseudogene ribosomal protein L13, pseudogene 2
Tssr122858 13 58762274 to 58762292 18 - TSS region transcription start site region 122858
Tssr122859 13 58762300 to 58762318 18 - TSS region transcription start site region 122859
Gm47947 13 58762385 to 58776543 14158 + lincRNA gene predicted gene, 47947
D13Mit167 13 58772682 to 58772826 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 167
Gm40968 13 58779111 to 58797450 18339 - lincRNA gene predicted gene, 40968
Cpgi5731 13 58806300 to 58808957 2657 CpG island CpG island 5731
Tssr120082 13 58806564 to 58806622 58 + TSS region transcription start site region 120082
Ntrk2 13 58806569 to 59133970 327401 + protein coding gene neurotrophic tyrosine kinase, receptor, type 2
clf2 13 58806569 to 72634198 13827629 heritable phenotypic marker cleft lip 2
Tssr120083 13 58806634 to 58806655 21 + TSS region transcription start site region 120083
Tssr120084 13 58807693 to 58807700 7 + TSS region transcription start site region 120084
Tssr120085 13 58807819 to 58807838 19 + TSS region transcription start site region 120085
Tssr120086 13 58807861 to 58807883 22 + TSS region transcription start site region 120086
Tssr120087 13 58807884 to 58807902 18 + TSS region transcription start site region 120087
Tssr120088 13 58808263 to 58808286 23 + TSS region transcription start site region 120088
Tssr120089 13 58808683 to 58808752 69 + TSS region transcription start site region 120089
C630044B11Rik 13 58812153 to 58814363 2210 + unclassified gene RIKEN cDNA C630044B11 gene
Gm47423 13 58824218 to 58826994 2776 - antisense lncRNA gene predicted gene, 47423
Tssr122860 13 58827011 to 58827014 3 - TSS region transcription start site region 122860